Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.1e-65 253.1 125 100.0
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.2e-64 248.8 125 98.4
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.3e-61 239.6 123 97.6
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.8e-53 211.5 123 82.9
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 4.0e-42 174.9 130 71.5
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 4.0e-42 174.9 130 71.5
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.0e-42 174.9 130 71.5
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.0e-41 172.6 130 70.8
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 4.4e-41 171.4 130 70.0
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.1e-39 166.8 130 69.2
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 3.1e-39 165.2 131 67.9
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 4.1e-39 164.9 130 68.5
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 1.6e-38 162.9 130 67.7
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.6e-38 162.9 130 67.7
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.6e-38 162.9 131 64.1
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.6e-38 162.9 130 64.6
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 2.0e-38 162.5 131 64.9
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 3.5e-38 161.8 133 67.7
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 3.5e-38 161.8 131 64.9
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 4.5e-38 161.4 131 66.4
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 4.5e-38 161.4 130 66.9
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 4.5e-38 161.4 130 64.6
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 5.9e-38 161.0 130 66.9
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 7.7e-38 160.6 133 66.9
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 7.7e-38 160.6 130 66.2
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 1.0e-37 160.2 130 66.2
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.0e-37 160.2 131 64.9
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 1.3e-37 159.8 130 66.2
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.7e-37 159.5 130 66.2
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 2.3e-37 159.1 131 64.9
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 2.3e-37 159.1 130 63.1
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 2.3e-37 159.1 130 66.2
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 2.3e-37 159.1 131 65.6
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 2.3e-37 159.1 130 61.5
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 2.3e-37 159.1 130 66.9
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 3.8e-37 158.3 130 65.4
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 3.8e-37 158.3 131 64.9
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 3.8e-37 158.3 131 64.9
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 3.8e-37 158.3 131 65.6
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 3.8e-37 158.3 131 65.6
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 5.0e-37 157.9 130 62.3
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 5.0e-37 157.9 131 64.1
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 6.5e-37 157.5 130 65.4
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 6.5e-37 157.5 130 63.8
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 6.5e-37 157.5 130 68.5
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 6.5e-37 157.5 130 65.4
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.1e-36 156.8 130 61.5
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 1.1e-36 156.8 131 63.4
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 1.1e-36 156.8 131 63.4
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 1.1e-36 156.8 131 63.4
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 1.5e-36 156.4 131 62.6
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 1.5e-36 156.4 131 62.6
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.9e-36 156.0 130 63.1
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.9e-36 156.0 131 64.1
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 3.3e-36 155.2 131 61.8
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 3.3e-36 155.2 131 61.1
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 3.3e-36 155.2 130 63.1
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 3.3e-36 155.2 130 64.6
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 5.5e-36 154.5 132 65.2
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 5.5e-36 154.5 132 65.2
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 5.5e-36 154.5 130 63.8
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 5.5e-36 154.5 132 65.2
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 7.2e-36 154.1 130 62.3
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 7.2e-36 154.1 132 65.2
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 7.2e-36 154.1 130 60.8
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 7.2e-36 154.1 131 62.6
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 7.2e-36 154.1 130 63.8
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 7.2e-36 154.1 130 62.3
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 9.5e-36 153.7 131 60.3
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.6e-35 152.9 130 60.0
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 1.6e-35 152.9 130 60.0
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 1.6e-35 152.9 131 61.8
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.6e-35 152.9 131 61.8
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 2.1e-35 152.5 130 60.0
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 2.1e-35 152.5 130 60.0
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 2.1e-35 152.5 130 60.0
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 2.1e-35 152.5 130 60.0
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.1e-35 152.5 131 60.3
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.1e-35 152.5 131 60.3
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 2.1e-35 152.5 130 59.2
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 2.8e-35 152.1 127 64.6
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.8e-35 152.1 130 61.5
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 3.6e-35 151.8 131 62.6
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 3.6e-35 151.8 131 61.8
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 3.6e-35 151.8 131 61.8
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.6e-35 151.8 125 65.6
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 4.7e-35 151.4 130 59.2
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 4.7e-35 151.4 131 61.1
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 4.7e-35 151.4 130 63.8
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 6.1e-35 151.0 130 62.3
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 6.1e-35 151.0 127 63.8
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 6.1e-35 151.0 130 59.2
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 6.1e-35 151.0 127 63.8
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 6.1e-35 151.0 127 63.8
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 6.1e-35 151.0 130 61.5
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 6.1e-35 151.0 127 62.2
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 8.0e-35 150.6 130 60.0
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 8.0e-35 150.6 132 62.9
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 8.0e-35 150.6 130 58.5
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 1.0e-34 150.2 130 60.8
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.0e-34 150.2 130 59.2
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.4e-34 149.8 130 58.5
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.8e-34 149.4 130 63.1
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 2.3e-34 149.1 132 61.4
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 2.3e-34 149.1 132 62.9
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 3.0e-34 148.7 130 58.5
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 4.0e-34 148.3 130 58.5
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 4.0e-34 148.3 140 58.6
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 5.2e-34 147.9 132 59.1
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 6.8e-34 147.5 132 60.6
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 6.8e-34 147.5 131 61.8
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 6.8e-34 147.5 130 60.8
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 6.8e-34 147.5 130 60.0
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 8.9e-34 147.1 127 60.6
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 8.9e-34 147.1 130 57.7
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 8.9e-34 147.1 130 58.5
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 8.9e-34 147.1 129 58.9
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 8.9e-34 147.1 126 62.7
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 8.9e-34 147.1 130 60.8
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 2.6e-33 145.6 131 55.7
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 2.6e-33 145.6 130 60.0
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 3.4e-33 145.2 130 60.0
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 3.4e-33 145.2 131 56.5
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 3.4e-33 145.2 130 57.7
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 4.4e-33 144.8 130 58.5
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 7.5e-33 144.1 130 57.7
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 1.3e-32 143.3 130 58.5
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 8.3e-32 140.6 125 62.4
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 3.1e-31 138.7 128 55.5
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 7.0e-31 137.5 125 59.2
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 2.0e-30 136.0 156 53.2
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 3.5e-30 135.2 125 53.6
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 5.9e-30 134.4 126 57.1
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 3.8e-29 131.7 115 61.7
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.9e-28 129.4 127 58.3
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 2.8e-27 125.6 78 76.9
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 6.1e-27 124.4 130 56.9
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.0e-26 123.6 82 70.7
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.0e-26 122.1 132 50.8
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 6.8e-26 120.9 123 56.9
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 4.4e-25 118.2 129 48.1
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.7e-24 116.3 76 72.4
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.1e-23 113.6 104 60.6
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 1.4e-23 113.2 129 47.3
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 2.4e-23 112.5 127 47.2
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 9.2e-23 110.5 121 51.2
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 1.2e-22 110.2 79 73.4
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.0e-21 105.5 118 44.9
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.9e-20 102.8 118 44.1
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 2.1e-19 99.4 103 50.5
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 2.3e-18 95.9 129 44.2
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 1.2e-17 93.6 130 43.1
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 1.2e-17 93.6 130 43.1
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.7e-16 89.7 77 64.9
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 1.2e-11 73.6 128 39.8
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 2.8e-11 72.4 58 60.3
Cre12.g556450 Chlamydomonas reinhardtii HOM05D004525 ORTHO05D005295 6.0e-06 54.7 65 36.9


User provided reference genes

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