Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.3e-152 543.1 302 100.0
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.8e-141 506.1 306 88.2
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 5.0e-123 444.9 279 86.4
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 4.2e-90 335.5 322 67.7
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 7.2e-82 308.1 301 60.8
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 1.7e-78 297.0 316 62.0
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 1.1e-74 284.3 357 56.9
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 2.8e-73 279.6 359 49.0
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 1.8e-72 276.9 346 56.4
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 3.1e-72 276.2 335 54.3
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 5.2e-72 275.4 329 54.7
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 3.4e-71 272.7 334 53.9
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 7.5e-71 271.6 347 53.6
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 9.8e-71 271.2 344 48.8
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 9.8e-71 271.2 356 47.8
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 2.4e-69 266.5 344 50.3
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 3.2e-69 266.2 351 51.9
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 9.2e-69 264.6 346 50.3
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 1.2e-68 264.2 365 49.3
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.3e-67 260.8 349 49.3
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 5.0e-67 258.8 354 48.3
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 5.0e-67 258.8 350 54.9
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 6.6e-67 258.5 348 46.8
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 8.6e-67 258.1 348 48.9
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 8.6e-67 258.1 349 52.1
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 8.6e-67 258.1 353 50.1
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.1e-66 257.7 375 48.3
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.5e-66 257.3 347 54.5
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.5e-66 257.3 373 46.6
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.9e-66 256.9 339 58.4
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 3.3e-66 256.1 359 53.2
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 3.3e-66 256.1 351 47.3
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 7.3e-66 255.0 347 54.2
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 1.2e-65 254.2 336 54.5
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 1.4e-64 250.8 353 51.0
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.8e-64 250.4 335 51.6
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 4.0e-64 249.2 347 50.4
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 4.0e-64 249.2 361 46.0
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 4.4e-63 245.7 331 51.4
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 5.8e-63 245.4 362 49.7
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.7e-62 243.8 362 51.9
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 2.2e-62 243.4 362 49.2
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.9e-62 243.0 361 49.9
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 3.7e-62 242.7 303 50.8
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 3.7e-62 242.7 359 49.3
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 6.4e-62 241.9 351 49.3
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 6.4e-62 241.9 358 50.6
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 6.4e-62 241.9 363 45.5
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 8.3e-62 241.5 347 49.3
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 8.3e-62 241.5 350 49.7
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 1.4e-61 240.7 350 45.7
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 3.2e-61 239.6 336 53.6
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 1.2e-60 237.7 335 54.9
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 3.5e-60 236.1 351 47.3
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 4.6e-60 235.7 369 43.1
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 2.3e-59 233.4 353 41.9
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 3.9e-59 232.6 359 43.7
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 1.9e-58 230.3 368 45.1
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 3.3e-58 229.6 316 49.7
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 9.5e-58 228.0 366 43.4
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 9.5e-58 228.0 345 50.1
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 2.1e-57 226.9 364 45.6
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 2.1e-57 226.9 347 46.4
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 2.1e-57 226.9 317 55.8
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 2.1e-57 226.9 374 40.9
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 2.8e-57 226.5 320 49.4
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 2.8e-57 226.5 320 49.4
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 2.8e-57 226.5 320 49.4
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 3.6e-57 226.1 344 46.8
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.4e-56 224.2 356 44.7
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 3.1e-56 223.0 332 47.9
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 8.9e-56 221.5 327 48.6
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.2e-55 221.1 338 47.0
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 5.8e-55 218.8 346 47.1
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 7.6e-55 218.4 357 47.3
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 9.9e-55 218.0 355 46.2
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 2.4e-53 213.4 314 47.5
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 3.2e-53 213.0 305 50.2
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 1.2e-52 211.1 372 41.1
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 1.6e-52 210.7 341 48.4
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 1.6e-52 210.7 313 48.6
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 2.7e-52 209.9 371 41.2
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 3.5e-52 209.5 340 40.6
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 4.6e-52 209.1 329 49.8
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 2.3e-51 206.8 341 44.0
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 3.9e-51 206.1 332 48.5
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 5.1e-51 205.7 351 43.9
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.1e-50 204.5 271 49.4
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 1.9e-50 203.8 358 41.1
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 1.9e-50 203.8 326 48.5
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 1.9e-50 203.8 270 49.6
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 2.8e-49 199.9 336 45.5
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 6.2e-49 198.7 346 47.7
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 8.9e-48 194.9 350 45.4
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 1.2e-47 194.5 323 43.7
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 3.4e-47 193.0 318 43.1
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 5.8e-47 192.2 329 43.8
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 5.8e-47 192.2 337 40.7
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 7.6e-47 191.8 327 48.3
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 9.9e-47 191.4 309 42.4
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.3e-46 191.0 333 42.3
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.7e-46 190.7 324 44.1
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 4.9e-46 189.1 343 44.9
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 4.9e-46 189.1 309 48.5
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 8.4e-46 188.3 317 45.1
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-45 188.0 319 44.2
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.4e-45 187.6 332 41.0
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 5.4e-45 185.7 318 43.7
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 7.1e-45 185.3 320 45.9
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 2.1e-44 183.7 352 43.2
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 2.7e-44 183.3 331 40.5
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 3.5e-44 183.0 327 44.3
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 4.6e-44 182.6 316 41.5
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 6.0e-44 182.2 315 41.3
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 6.0e-44 182.2 323 42.1
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 7.8e-44 181.8 316 40.8
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 1.3e-43 181.0 316 41.5
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 2.3e-43 180.3 351 41.0
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 3.0e-43 179.9 319 43.3
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.9e-42 177.2 327 43.4
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.3e-41 174.5 351 40.7
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 1.3e-41 174.5 348 41.1
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 2.8e-41 173.3 344 41.9
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 4.8e-41 172.6 294 44.9
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 8.1e-41 171.8 320 43.8
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-40 171.4 340 43.8
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-40 171.4 340 43.8
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 1.1e-40 171.4 340 43.8
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 1.1e-40 171.4 222 55.9
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.4e-40 171.0 354 42.4
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 4.0e-40 169.5 330 38.2
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 4.0e-40 169.5 344 41.3
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 1.2e-39 167.9 320 42.8
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 1.5e-39 167.5 317 47.6
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-39 166.8 318 42.8
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-39 166.8 318 42.8
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 2.6e-39 166.8 318 42.8
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 9.9e-39 164.9 344 34.6
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 1.9e-37 160.6 206 49.0
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 4.2e-37 159.5 346 42.2
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 9.3e-37 158.3 303 39.6
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.6e-36 157.5 331 40.5
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 2.1e-36 157.1 307 36.5
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 2.1e-36 157.1 232 47.8
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 3.5e-36 156.4 322 41.0
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 7.9e-36 155.2 307 39.7
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 6.6e-35 152.1 311 41.5
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 3.6e-33 146.4 313 36.4
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 6.2e-33 145.6 253 38.3
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 2.4e-32 143.7 322 37.6
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 4.0e-32 142.9 368 35.1
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 6.9e-32 142.1 307 36.2
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.2e-31 141.4 398 32.2
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 5.8e-31 139.0 339 32.7
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 4.9e-30 136.0 242 42.1
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 6.4e-30 135.6 309 35.9
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 1.9e-29 134.0 316 36.7
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 2.4e-29 133.7 301 38.5
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 7.9e-28 128.6 341 36.1
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 2.5e-26 123.6 411 30.4
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 5.6e-26 122.5 256 42.2
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 3.4e-23 113.2 310 35.8
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 1.6e-20 104.4 312 36.9
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 6.0e-20 102.4 330 41.2
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 3.9e-19 99.8 181 46.4
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 2.5e-18 97.1 182 41.8
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 2.0e-15 87.4 355 35.8
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 5.1e-11 72.8 162 39.5
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 2.8e-09 67.0 179 34.1
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 4.1e-08 63.2 242 28.9
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 9.0e-08 62.0 96 41.7
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 3.8e-06 56.6 235 26.0


User provided reference genes

Program Settings