Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 8.7e-42 173.3 94 100.0
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.2e-36 154.5 73 100.0
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 1.8e-34 149.1 95 88.4
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 4.0e-23 111.3 89 64.0
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.0e-21 106.7 63 77.8
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 1.1e-20 103.2 73 68.5
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 4.2e-20 101.3 62 72.6
PGSC0003DMG400023737 Solanum tuberosum HOM05D004137 ORTHO05D004804 7.1e-20 100.5 67 70.1
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 6.0e-19 97.4 89 58.4
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 1.3e-18 96.3 74 64.9
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 2.2e-16 89.0 70 60.0
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 2.8e-16 88.6 64 67.2
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 3.7e-16 88.2 67 65.7
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 8.2e-16 87.0 74 59.5
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.1e-15 86.7 67 58.2
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 1.1e-15 86.7 67 59.7
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.4e-15 86.3 67 61.2
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.8e-15 85.9 68 60.3
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 4.1e-15 84.7 67 58.2
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 9.0e-15 83.6 67 61.2
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 9.0e-15 83.6 64 64.1
Haze_19423 Corylus avellana HOM05D004137 ORTHO05D004804 1.2e-14 83.2 63 66.7
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.2e-14 83.2 63 63.5
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 1.5e-14 82.8 70 58.6
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.5e-14 82.8 66 60.6
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 2.0e-14 82.4 67 58.2
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 2.6e-14 82.0 73 57.5
Cfa016445 Carpinus fangiana HOM05D001721 ORTHO05D001804 7.7e-14 80.5 60 68.3
ClCG10G013400 Citrullus lanatus HOM05D004137 ORTHO05D004804 7.7e-14 80.5 60 61.7
MELO3C026884.2 Cucumis melo HOM05D004137 ORTHO05D004804 1.0e-13 80.1 60 60.0
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.7e-13 79.3 68 54.4
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 2.9e-13 78.6 65 58.5
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 2.5e-12 75.5 64 56.2
Sed0004008 Sechium edule HOM05D004137 ORTHO05D004804 2.5e-12 75.5 60 58.3
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 3.2e-12 75.1 60 56.7
FvH4_4g27600 Fragaria vesca HOM05D004137 ORTHO05D004804 5.5e-12 74.3 51 72.5
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 7.2e-12 73.9 75 46.7
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 9.4e-12 73.6 64 54.7
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.2e-11 73.2 59 54.2
Prupe.7G004500 Prunus persica HOM05D004137 ORTHO05D004804 1.6e-11 72.8 60 61.7
CiPaw.09G002200 Carya illinoinensis HOM05D004137 ORTHO05D004804 2.1e-11 72.4 53 67.9
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.1e-11 72.4 67 55.2
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.1e-11 72.4 67 55.2
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.6e-11 71.6 67 55.2
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 6.1e-11 70.9 67 52.2
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 7.9e-11 70.5 64 51.6
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 7.9e-11 70.5 57 59.6
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 1.8e-10 69.3 65 53.8
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.3e-10 68.9 72 48.6
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 3.0e-10 68.6 56 57.1
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 6.7e-10 67.4 60 58.3
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 6.7e-10 67.4 61 54.1
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 8.8e-10 67.0 60 56.7
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 8.8e-10 67.0 60 56.7
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 8.8e-10 67.0 60 50.0
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 8.8e-10 67.0 65 46.2
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 8.8e-10 67.0 65 46.2
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.1e-09 66.6 73 50.7
Peaxi162Scf00003g04814 Petunia axillaris HOM05D004137 ORTHO05D004804 1.5e-09 66.2 35 88.6
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 1.5e-09 66.2 74 45.9
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 1.5e-09 66.2 62 56.5
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 2.0e-09 65.9 69 44.9
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 2.5e-09 65.5 75 44.0
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.5e-09 65.5 76 46.1
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 3.3e-09 65.1 72 48.6
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.3e-09 65.1 65 46.2
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.3e-09 64.7 72 47.2
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 7.4e-09 63.9 74 50.0
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 7.4e-09 63.9 68 48.5
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 1.3e-08 63.2 71 45.1
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.7e-08 62.8 66 48.5
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 2.2e-08 62.4 65 46.2
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.2e-08 62.4 60 48.3
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.2e-08 62.4 66 47.0
Medtr7g085660 Medicago truncatula HOM05D004137 ORTHO05D004804 4.8e-08 61.2 60 55.0
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 6.3e-08 60.8 65 44.6
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.1e-07 60.1 70 50.0
Lj1g0005734 Lotus japonicus HOM05D004137 ORTHO05D004804 1.8e-07 59.3 45 62.2
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 3.1e-07 58.5 74 40.5
BcaC05g29894 Brassica carinata HOM05D004137 ORTHO05D004804 4.1e-07 58.2 59 47.5
BolC5t34968H Brassica oleracea HOM05D004137 ORTHO05D004804 4.1e-07 58.2 59 47.5
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 5.3e-07 57.8 70 38.6
BcaC05g30244 Brassica carinata HOM05D004137 ORTHO05D004804 6.9e-07 57.4 59 47.5
BcaC05g30291 Brassica carinata HOM05D004137 ORTHO05D004804 6.9e-07 57.4 59 47.5
A05p43490 Brassica napus HOM05D004137 ORTHO05D004804 6.9e-07 57.4 59 47.5
BraA05t23089Z Brassica rapa HOM05D004137 ORTHO05D004804 6.9e-07 57.4 59 47.5
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 9.1e-07 57.0 70 41.4
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 9.1e-07 57.0 76 40.8
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 1.2e-06 56.6 67 43.3
VMungo1383G3601 Vigna mungo HOM05D001721 ORTHO05D001804 1.5e-06 56.2 42 64.3
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.0e-06 55.8 70 40.0
Carub.0003s0313 Capsella rubella HOM05D004137 ORTHO05D004804 2.0e-06 55.8 59 47.5
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 2.0e-06 55.8 62 50.0
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 2.0e-06 55.8 65 44.6
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 2.6e-06 55.5 65 43.1
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 3.4e-06 55.1 70 40.0
Phvul.001G111100 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 3.4e-06 55.1 42 61.9
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 4.5e-06 54.7 65 47.7
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 5.9e-06 54.3 70 44.3
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 7.7e-06 53.9 70 38.6
SHI14661 Sapria himalayana HOM05D004137 ORTHO05D004804 7.7e-06 53.9 39 59.0


User provided reference genes

Program Settings