Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008293 Solanum tuberosum HOM05D001340 ORTHO05D005342 2.4e-31 138.3 73 100.0
Solyc10g045540.2 Solanum lycopersicum HOM05D001340 ORTHO05D005342 2.9e-13 78.2 57 75.4
Sopen10g015810 Solanum pennellii HOM05D001340 ORTHO05D005342 2.9e-13 78.2 57 75.4
Nitab4.5_0000155g0120 Nicotiana tabacum HOM05D001340 ORTHO05D005342 3.3e-12 74.7 57 73.7
Nitab4.5_0007698g0020 Nicotiana tabacum HOM05D001340 ORTHO05D005342 3.3e-12 74.7 57 73.7
Potri.013G008400 Populus trichocarpa HOM05D001340 ORTHO05D005342 1.2e-11 72.8 65 63.1
Peaxi162Scf00595g00424 Petunia axillaris HOM05D001340 ORTHO05D005342 1.6e-11 72.4 57 71.9
CAN.G1.66 Capsicum annuum HOM05D001340 ORTHO05D005342 2.8e-11 71.6 57 71.9
RcHm_v2.0_Chr3g0457141 Rosa chinensis HOM05D001340 ORTHO05D005342 2.8e-11 71.6 67 59.7
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 4.7e-11 70.9 64 62.5
Sabra13G0007100 Salix brachista HOM05D001340 ORTHO05D005342 8.0e-11 70.1 59 66.1
CSS0004963 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.0e-10 69.7 64 62.5
CSS0048085 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.8e-10 68.9 64 60.9
FvH4_6g07471 Fragaria vesca HOM05D001340 ORTHO05D005342 2.3e-10 68.6 57 66.7
FAN05G0225 Fragaria x ananassa HOM05D001340 ORTHO05D005342 2.3e-10 68.6 57 66.7
FAN14G4490 Fragaria x ananassa HOM05D001340 ORTHO05D005342 2.3e-10 68.6 57 66.7
Prupe.6G312500 Prunus persica HOM05D001340 ORTHO05D002318 2.3e-10 68.6 67 58.2
Sabra05G0022300 Salix brachista HOM05D001340 ORTHO05D005342 3.1e-10 68.2 57 66.7
MD12G1205500 Malus domestica HOM05D001340 ORTHO05D005342 5.2e-10 67.4 64 59.4
TWI36G1129 Tripterygium wilfordii HOM05D001340 ORTHO05D005342 5.2e-10 67.4 64 59.4
CSS0027854 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 6.8e-10 67.0 64 59.4
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 6.8e-10 67.0 64 59.4
Thecc.05G323400 Theobroma cacao HOM05D001340 ORTHO05D005342 6.8e-10 67.0 64 59.4
TAR633G1496 Trochodendron aralioides HOM05D000961 ORTHO05D000841 6.8e-10 67.0 69 55.1
TAR706G0001 Trochodendron aralioides HOM05D001340 ORTHO05D005342 6.8e-10 67.0 69 55.1
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 8.9e-10 66.6 74 55.4
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 8.9e-10 66.6 74 55.4
SalBow7G3618 Salvia bowleyana HOM05D001340 ORTHO05D005342 8.9e-10 66.6 64 60.9
FAN09G1839 Fragaria x ananassa HOM05D001340 ORTHO05D005342 1.2e-09 66.2 57 64.9
Oeu000006.2 Olea europaea HOM05D001340 ORTHO05D005342 1.2e-09 66.2 64 59.4
Sabra05G0009600 Salix brachista HOM05D001340 ORTHO05D005342 1.2e-09 66.2 59 62.7
Hma1.2p1_0008F-1.1_g005585 Hydrangea macrophylla HOM05D001340 ORTHO05D005342 1.5e-09 65.9 64 57.8
Lj5C332T2 Lonicera japonica HOM05D001340 ORTHO05D005342 1.5e-09 65.9 64 59.4
RcHm_v2.0_Chr3g0457171 Rosa chinensis HOM05D001340 ORTHO05D005342 1.5e-09 65.9 67 55.2
Sabra05G0010800 Salix brachista HOM05D001340 ORTHO05D005342 2.0e-09 65.5 57 63.2
HanXRQChr06g0173421 Helianthus annuus HOM05D001340 ORTHO05D005342 2.6e-09 65.1 64 57.8
Lalb_Chr02g0147791 Lupinus albus HOM05D001340 ORTHO05D005342 2.6e-09 65.1 64 54.7
Medtr1g084100 Medicago truncatula HOM05D001340 ORTHO05D005342 3.4e-09 64.7 65 55.4
PSO170G0183 Papaver somniferum HOM05D001340 ORTHO05D005342 3.4e-09 64.7 72 51.4
Aqoxy7G01123 Aquilegia oxysepala HOM05D001340 ORTHO05D005342 4.4e-09 64.3 71 52.1
CANSAT54G2301 Cannabis sativa HOM05D001340 ORTHO05D005342 4.4e-09 64.3 58 60.3
FAN02G4226 Fragaria x ananassa HOM05D001340 ORTHO05D005342 5.8e-09 63.9 57 63.2
Nn4g25585 Nelumbo nucifera HOM05D001340 ORTHO05D005342 5.8e-09 63.9 64 56.2
MSTRG.20379 Avicennia marina HOM05D001340 ORTHO05D005342 7.5e-09 63.5 57 63.2
Aa31LG2G11470 Aethionema arabicum HOM05D001340 ORTHO05D005342 1.3e-08 62.8 71 49.3
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 1.3e-08 62.8 71 50.7
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 1.3e-08 62.8 71 50.7
A03p66580 Brassica napus HOM05D001340 ORTHO05D005342 1.7e-08 62.4 71 49.3
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 1.7e-08 62.4 71 49.3
Carub.0002s0770 Capsella rubella HOM05D001340 ORTHO05D005342 1.7e-08 62.4 71 52.1
DCAR_029350 Daucus carota HOM05D001340 ORTHO05D005342 1.7e-08 62.4 71 56.3
PSO357G0240 Papaver somniferum HOM05D001340 ORTHO05D005342 1.7e-08 62.4 72 50.0
vmacro01564 Vaccinium macrocarpon HOM05D001340 ORTHO05D005342 1.7e-08 62.4 64 56.2
Migut.B00963 Erythranthe guttata HOM05D001340 ORTHO05D005342 2.2e-08 62.0 61 57.4
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 2.9e-08 61.6 71 49.3
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 2.9e-08 61.6 71 49.3
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 2.9e-08 61.6 71 49.3
Lsat_1_v5_gn_9_121900 Lactuca sativa HOM05D001340 ORTHO05D005342 2.9e-08 61.6 57 59.6
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 3.7e-08 61.2 71 49.3
Cc02_g35070 Coffea canephora HOM05D001340 ORTHO05D005342 3.7e-08 61.2 57 59.6
HPP92_013522 Vanilla planifolia HOM05D001340 ORTHO05D005342 3.7e-08 61.2 73 46.6
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 4.9e-08 60.8 71 49.3
Psat0s3278g0040 Pisum sativum HOM05D001340 ORTHO05D005342 4.9e-08 60.8 65 52.3
CSS0048014 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 6.4e-08 60.5 64 56.2
Cpa.g.sc48.165 Carica papaya HOM05D001340 ORTHO05D005342 6.4e-08 60.5 64 51.6
CDE01G0158 Ceratophyllum demersum HOM05D000961 ORTHO05D000841 6.4e-08 60.5 61 52.5
Os05g0129900 Oryza sativa ssp. japonica HOM05D001340 ORTHO05D005342 6.4e-08 60.5 57 54.4
ATR0796G093 Amborella trichopoda HOM05D001340 ORTHO05D005342 8.3e-08 60.1 61 50.8
arahy.Tifrunner.gnm1.ann1.CI26SV Arachis hypogaea HOM05D001340 ORTHO05D005342 8.3e-08 60.1 61 52.5
arahy.Tifrunner.gnm1.ann1.Y2Y4QF Arachis hypogaea HOM05D001340 ORTHO05D005342 8.3e-08 60.1 61 52.5
Cfa006706 Carpinus fangiana HOM05D001340 ORTHO05D002318 8.3e-08 60.1 57 57.9
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 8.3e-08 60.1 71 47.9
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 1.4e-07 59.3 71 47.9
C04p27080 Brassica napus HOM05D001340 ORTHO05D005342 1.4e-07 59.3 71 47.9
BolC4t24084H Brassica oleracea HOM05D001340 ORTHO05D005342 1.4e-07 59.3 71 47.9
CSS0029007 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D005342 1.9e-07 58.9 64 54.7
SGA_v2.0_scaffold4G01971 Striga asiatica HOM05D001340 ORTHO05D005342 1.9e-07 58.9 70 50.0
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 3.2e-07 58.2 71 46.5
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 3.2e-07 58.2 71 46.5
PSO541G4969 Papaver somniferum HOM05D001340 ORTHO05D005342 3.2e-07 58.2 61 54.1
Hund07313 Selenicereus undatus HOM05D001340 ORTHO05D005342 3.2e-07 58.2 63 50.8
Lj5g0005524 Lotus japonicus HOM05D001340 ORTHO05D005342 4.1e-07 57.8 56 55.4
Lj5g0009841 Lotus japonicus HOM05D001340 ORTHO05D005342 4.1e-07 57.8 56 55.4
Rhsim11G0095300 Rhododendron simsii HOM05D001340 ORTHO05D005342 4.1e-07 57.8 64 51.6
Sed0025878 Sechium edule HOM05D001340 ORTHO05D005342 4.1e-07 57.8 64 50.0
MELO3C004179.2 Cucumis melo HOM05D001340 ORTHO05D005342 5.4e-07 57.4 64 50.0
CsaV3_2G007140 Cucumis sativus L. HOM05D001340 ORTHO05D005342 5.4e-07 57.4 64 50.0
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 9.2e-07 56.6 71 45.1
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 1.2e-06 56.2 66 51.5
ClCG02G014870 Citrullus lanatus HOM05D001340 ORTHO05D005342 2.0e-06 55.5 63 50.8
Peaxi162Scf00750g00034 Petunia axillaris HOM05D001340 ORTHO05D005342 2.0e-06 55.5 29 93.1


User provided reference genes

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