Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 1.0e-149 533.5 285 100.0
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 2.0e-145 519.2 285 96.1
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 2.2e-144 515.8 285 94.0
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 4.5e-142 508.1 285 91.2
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 5.9e-142 507.7 255 97.3
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 3.6e-139 498.4 255 93.7
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 2.2e-136 489.2 285 89.8
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 6.3e-136 487.6 285 90.9
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 1.8e-135 486.1 249 94.0
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 2.4e-135 485.7 255 92.2
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 3.1e-135 485.3 254 92.1
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 3.1e-135 485.3 249 92.8
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 3.1e-135 485.3 250 92.4
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 3.1e-135 485.3 250 92.4
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 4.1e-135 485.0 251 92.0
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.2e-134 483.4 255 91.0
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 1.6e-134 483.0 254 89.4
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 3.5e-134 481.9 253 90.9
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 3.5e-134 481.9 254 90.9
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 5.9e-134 481.1 250 92.0
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 7.7e-134 480.7 252 90.9
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 1.0e-133 480.3 254 90.9
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 1.0e-133 480.3 249 92.4
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 1.3e-133 479.9 251 91.6
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 1.3e-133 479.9 249 92.4
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 1.7e-133 479.6 286 90.2
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 1.7e-133 479.6 250 91.6
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 1.7e-133 479.6 254 89.4
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 2.2e-133 479.2 249 92.8
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 2.2e-133 479.2 253 90.1
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 2.2e-133 479.2 252 90.5
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 2.9e-133 478.8 285 87.0
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.8e-133 478.4 255 91.4
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 3.8e-133 478.4 247 92.3
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 5.0e-133 478.0 249 91.6
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 6.5e-133 477.6 255 91.4
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.5e-133 477.6 255 91.4
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 6.5e-133 477.6 249 92.8
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 8.5e-133 477.2 251 90.8
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 8.5e-133 477.2 250 91.2
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 1.1e-132 476.9 285 83.2
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 1.5e-132 476.5 255 89.4
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.5e-132 476.5 285 86.7
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.9e-132 476.1 255 91.0
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.9e-132 476.1 249 91.6
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 3.2e-132 475.3 255 89.0
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 3.2e-132 475.3 250 90.4
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 4.2e-132 474.9 249 92.4
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 5.5e-132 474.6 251 91.2
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 5.5e-132 474.6 252 90.5
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 7.2e-132 474.2 249 90.4
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 9.4e-132 473.8 250 91.2
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 9.4e-132 473.8 255 89.8
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 9.4e-132 473.8 285 86.3
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 1.2e-131 473.4 303 84.8
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 1.6e-131 473.0 285 84.9
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 1.6e-131 473.0 248 91.1
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 2.1e-131 472.6 251 90.0
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 2.1e-131 472.6 254 88.6
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 2.1e-131 472.6 249 90.0
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.7e-131 472.2 244 94.3
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 4.7e-131 471.5 250 90.0
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 4.7e-131 471.5 261 88.5
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 4.7e-131 471.5 249 90.4
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 6.1e-131 471.1 285 86.0
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 8.0e-131 470.7 254 88.6
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 8.0e-131 470.7 250 90.4
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 1.8e-130 469.5 249 90.4
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.8e-130 469.5 250 90.0
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.8e-130 469.5 250 90.0
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 2.3e-130 469.2 252 88.5
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.3e-130 469.2 281 86.1
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 3.0e-130 468.8 250 90.4
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 5.2e-130 468.0 250 89.2
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 8.8e-130 467.2 246 91.1
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 8.8e-130 467.2 251 88.8
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 1.2e-129 466.8 249 89.6
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.5e-129 466.5 249 89.6
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 2.0e-129 466.1 246 91.5
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 2.6e-129 465.7 250 90.4
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 3.3e-129 465.3 255 87.5
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 7.5e-129 464.2 249 89.2
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 1.3e-128 463.4 247 89.1
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 1.7e-128 463.0 252 87.7
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 3.7e-128 461.8 251 87.6
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 4.8e-128 461.5 245 90.6
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 1.0e-125 453.8 250 86.0
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 3.2e-124 448.7 248 87.9
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 5.5e-124 448.0 250 86.4
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.0e-122 443.7 249 87.1
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 5.2e-122 441.4 248 84.7
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 2.0e-121 439.5 267 82.4
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 3.1e-119 432.2 228 91.7
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 4.5e-118 428.3 239 84.9
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 1.0e-117 427.2 223 91.9
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 1.3e-117 426.8 249 81.9
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 2.3e-117 426.0 353 64.9
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 2.5e-116 422.5 250 82.4
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 1.8e-114 416.4 242 82.2
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 6.3e-112 407.9 251 77.3
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 3.6e-107 392.1 222 86.0
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 2.8e-99 365.9 191 93.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 1.4e-95 353.6 189 91.5
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 2.5e-92 342.8 243 69.1
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 3.6e-91 339.0 171 97.7
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 4.4e-89 332.0 171 93.6
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 5.4e-87 325.1 168 94.6
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 1.7e-85 320.1 181 88.4
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.6e-83 313.5 162 91.4
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 2.4e-82 309.7 183 83.6
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 1.1e-76 290.8 185 76.2
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.1e-74 284.3 164 86.0
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 1.2e-73 280.8 145 95.2
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-73 280.8 164 83.5
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.4e-73 279.3 164 84.8
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 2.1e-70 270.0 147 90.5
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.6e-70 268.9 177 77.4
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.0e-69 267.7 155 86.5
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.5e-68 263.8 155 85.2
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.9e-68 263.5 152 83.6
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.6e-68 261.9 213 66.2
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 3.1e-66 256.1 156 81.4
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 2.3e-61 240.0 148 81.1
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 1.9e-52 210.3 141 75.9
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 5.6e-52 208.8 190 54.2
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.6e-52 208.8 151 71.5
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 1.7e-40 170.6 93 88.2
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 2.2e-40 170.2 167 58.1
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 4.2e-31 139.4 76 90.8
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 3.3e-28 129.8 190 44.7
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 1.7e-27 127.5 94 73.4
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 9.1e-26 121.7 71 81.7
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.2e-25 121.3 93 66.7
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 2.2e-19 100.5 55 83.6
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 6.3e-19 99.0 55 81.8
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 4.5e-17 92.8 50 84.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 4.2e-15 86.3 46 80.4


User provided reference genes

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