Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 1.4e-201 706.1 343 100.0
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 1.6e-197 692.6 343 98.3
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 5.9e-197 690.6 343 98.0
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 4.7e-186 654.4 339 92.3
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 3.7e-183 644.8 339 91.4
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 5.4e-182 641.0 339 90.3
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 4.0e-161 571.6 340 83.2
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 2.7e-149 532.3 341 74.8
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 2.7e-149 532.3 343 74.1
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 1.3e-140 503.4 333 70.0
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 3.0e-140 502.3 342 71.9
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 3.9e-140 501.9 338 70.7
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 5.1e-140 501.5 337 69.7
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 1.4e-137 493.4 344 67.2
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 1.8e-137 493.0 335 71.6
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 2.4e-137 492.7 343 68.8
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 5.3e-137 491.5 338 71.6
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 7.1e-134 481.1 334 67.1
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 1.2e-133 480.3 348 67.2
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 2.1e-133 479.6 342 67.0
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 2.7e-133 479.2 345 66.7
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 1.7e-132 476.5 333 68.5
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 1.7e-132 476.5 337 68.2
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 2.3e-132 476.1 337 69.7
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 2.3e-132 476.1 333 67.6
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 3.0e-132 475.7 334 68.0
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 3.9e-132 475.3 337 68.8
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 3.9e-132 475.3 340 66.5
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 5.1e-132 474.9 343 66.5
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 1.1e-131 473.8 339 67.6
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 1.5e-131 473.4 337 68.5
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 3.3e-131 472.2 340 66.5
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 4.3e-131 471.9 343 67.9
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 5.6e-131 471.5 337 65.6
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 5.6e-131 471.5 345 66.4
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 7.3e-131 471.1 340 65.9
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 7.3e-131 471.1 342 67.0
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 1.3e-130 470.3 341 65.4
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 1.3e-130 470.3 336 68.2
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 2.1e-130 469.5 336 66.7
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 3.6e-130 468.8 342 65.8
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 4.8e-130 468.4 335 66.3
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 1.1e-129 467.2 339 65.2
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 1.1e-129 467.2 330 68.2
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 1.4e-129 466.8 342 64.9
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 1.4e-129 466.8 340 67.1
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 2.4e-129 466.1 339 66.4
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 4.0e-129 465.3 346 64.7
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 5.3e-129 464.9 339 65.2
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 1.2e-128 463.8 334 66.5
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 3.4e-128 462.2 347 63.7
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 4.5e-128 461.8 332 63.9
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 5.8e-128 461.5 339 64.3
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 1.3e-127 460.3 343 64.1
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 6.4e-127 458.0 347 66.0
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 8.4e-127 457.6 330 66.1
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 3.2e-126 455.7 331 62.5
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 3.2e-126 455.7 350 64.3
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 7.1e-126 454.5 348 61.8
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 9.3e-126 454.1 333 62.2
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 9.3e-126 454.1 332 64.2
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.2e-125 453.8 346 64.7
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 2.1e-125 453.0 335 66.6
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 2.7e-125 452.6 333 63.4
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 2.7e-125 452.6 338 64.2
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 2.7e-125 452.6 331 62.2
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 1.0e-124 450.7 333 61.9
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 1.0e-124 450.7 337 66.5
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 1.3e-124 450.3 343 63.6
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 3.0e-124 449.1 334 62.0
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.9e-124 448.7 336 64.3
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 6.7e-124 448.0 332 62.7
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 8.7e-124 447.6 342 62.9
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 8.7e-124 447.6 333 66.1
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.1e-123 447.2 336 64.0
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 1.9e-123 446.4 333 63.4
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 3.3e-123 445.7 337 63.8
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 4.3e-123 445.3 329 62.6
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 4.3e-123 445.3 340 63.5
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 1.1e-121 440.7 286 73.8
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 1.1e-121 440.7 389 56.8
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 1.8e-121 439.9 338 60.9
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 4.2e-118 428.7 337 60.8
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 6.0e-117 424.9 334 62.0
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.0e-116 424.1 330 63.0
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 1.8e-116 423.3 365 57.5
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 1.8e-116 423.3 330 62.4
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.9e-116 422.2 330 62.1
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 6.7e-116 421.4 344 58.7
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 5.6e-115 418.3 334 59.9
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.3e-114 417.2 330 62.1
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 1.6e-114 416.8 336 61.0
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 2.8e-114 416.0 330 62.1
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 2.4e-113 412.9 337 61.7
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.5e-112 410.2 330 60.6
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 5.8e-112 408.3 376 56.6
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 1.0e-111 407.5 354 57.1
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 7.1e-110 401.4 265 72.5
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 1.0e-108 397.5 335 56.4
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 1.3e-108 397.1 435 49.9
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 3.0e-108 396.0 349 59.9
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 3.0e-108 396.0 336 57.7
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 1.4e-105 387.1 333 58.9
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 5.3e-105 385.2 335 57.3
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 4.6e-101 372.1 348 53.2
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 5.1e-100 368.6 352 54.3
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 2.2e-90 336.7 251 63.7
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 6.5e-87 325.1 254 61.4
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.1e-86 324.3 287 58.9
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 6.3e-82 308.5 232 62.5
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 7.2e-78 295.0 227 63.4
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 2.3e-76 290.0 183 74.9
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 3.5e-72 276.2 345 41.2
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 9.4e-70 268.1 343 38.2
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 5.2e-60 235.7 337 38.6
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.2e-59 234.6 203 58.1
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 1.2e-51 208.0 166 68.1
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 7.8e-48 195.3 183 58.5
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 9.5e-46 188.3 261 39.1
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 2.1e-45 187.2 195 50.8
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 9.2e-41 171.8 181 50.3
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 2.3e-36 157.1 173 49.7
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 6.8e-36 155.6 226 41.2
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 1.4e-25 121.3 81 69.1
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 1.3e-18 98.2 130 39.2
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.9e-18 97.1 72 61.1
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.9e-18 97.1 72 61.1
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 2.9e-18 97.1 72 61.1
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 2.4e-17 94.0 72 59.7
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 3.9e-15 86.7 128 36.7
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.6e-13 81.3 78 51.3
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 1.6e-13 81.3 78 51.3
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 8.1e-13 79.0 161 35.4
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 1.5e-11 74.7 71 52.1
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 2.6e-11 73.9 71 52.1
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 9.9e-11 72.0 71 50.7
FAN22G2156 Fragaria x ananassa HOM05D002676 ORTHO05D003194 6.4e-10 69.3 71 47.9
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 2.4e-09 67.4 55 54.5
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 2.7e-08 63.9 61 52.5
SHI23126 Sapria himalayana HOM05D006263 ORTHO05D007549 5.1e-07 59.7 89 37.1


User provided reference genes

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