Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 9.1e-66 253.4 129 100.0
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.8e-64 248.1 129 98.4
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.5e-63 245.4 129 97.7
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 3.2e-63 245.0 129 96.9
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.2e-63 244.6 129 96.9
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 3.9e-61 238.0 125 98.4
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.4e-55 219.5 124 92.7
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 1.6e-54 216.1 126 84.9
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 1.6e-54 216.1 127 84.3
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.1e-54 215.7 128 85.2
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 6.1e-54 214.2 127 81.9
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 6.1e-54 214.2 127 82.7
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 7.9e-54 213.8 126 84.1
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 7.9e-54 213.8 127 83.5
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 1.4e-53 213.0 127 82.7
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.8e-53 212.6 127 83.5
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.8e-53 212.6 129 82.2
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 1.8e-53 212.6 129 81.4
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.0e-53 211.8 125 85.6
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 5.2e-53 211.1 127 82.7
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 5.2e-53 211.1 127 81.1
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 5.2e-53 211.1 127 80.3
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 5.2e-53 211.1 126 81.0
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 6.7e-53 210.7 127 81.1
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 6.7e-53 210.7 127 81.1
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 8.8e-53 210.3 127 80.3
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.0e-52 209.1 126 84.1
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.6e-52 208.8 125 82.4
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.3e-52 208.4 126 82.5
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 7.4e-52 207.2 127 81.1
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 7.4e-52 207.2 127 80.3
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 7.4e-52 207.2 123 87.0
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.3e-51 206.5 125 82.4
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 3.7e-51 204.9 118 85.6
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 3.7e-51 204.9 120 85.0
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 3.7e-51 204.9 123 83.7
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 3.7e-51 204.9 129 79.1
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 3.7e-51 204.9 127 81.9
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.8e-51 204.5 130 77.7
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 4.8e-51 204.5 127 78.7
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.4e-50 203.0 127 78.7
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.4e-50 203.0 125 80.8
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.8e-50 202.6 121 81.8
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.8e-50 202.6 123 80.5
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 1.8e-50 202.6 128 76.6
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 4.1e-50 201.4 120 81.7
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 4.1e-50 201.4 118 84.7
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 5.3e-50 201.1 127 79.5
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 9.1e-50 200.3 124 79.8
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 9.1e-50 200.3 120 81.7
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.0e-49 199.1 124 81.5
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 2.6e-49 198.7 123 81.3
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.5e-49 198.4 123 80.5
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.5e-49 198.4 123 78.9
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.5e-49 198.4 121 81.0
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 7.7e-49 197.2 123 80.5
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 7.7e-49 197.2 123 79.7
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 7.7e-49 197.2 120 78.3
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.0e-48 196.8 125 77.6
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.7e-48 196.1 124 77.4
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 2.2e-48 195.7 128 77.3
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 2.9e-48 195.3 124 76.6
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 3.8e-48 194.9 124 77.4
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 3.8e-48 194.9 124 77.4
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 3.8e-48 194.9 120 80.0
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 3.8e-48 194.9 119 79.8
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 5.0e-48 194.5 124 76.6
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 5.0e-48 194.5 124 76.6
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 5.0e-48 194.5 124 76.6
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 6.5e-48 194.1 118 79.7
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 6.5e-48 194.1 121 78.5
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 8.5e-48 193.7 123 76.4
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.1e-47 193.4 119 79.0
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.9e-47 192.6 121 76.9
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.5e-47 192.2 127 77.2
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 3.2e-47 191.8 121 76.9
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 4.2e-47 191.4 124 75.0
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 5.5e-47 191.0 120 75.8
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 5.5e-47 191.0 123 78.0
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 7.2e-47 190.7 127 76.4
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 7.2e-47 190.7 125 76.8
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 9.4e-47 190.3 123 77.2
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.2e-46 189.9 116 80.2
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.2e-46 189.9 128 72.7
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.2e-46 189.9 121 76.0
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 4.7e-46 188.0 116 78.4
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.7e-46 188.0 120 77.5
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 6.1e-46 187.6 120 77.5
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 8.0e-46 187.2 114 80.7
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 8.0e-46 187.2 123 72.4
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 1.4e-45 186.4 124 78.2
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 5.2e-45 184.5 124 72.6
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 5.2e-45 184.5 124 72.6
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 6.7e-45 184.1 117 76.9
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 8.8e-45 183.7 104 88.5
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 8.8e-45 183.7 108 87.0
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 1.5e-44 183.0 113 80.5
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.5e-44 183.0 110 85.5
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 2.0e-44 182.6 121 71.9
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 9.7e-44 180.3 124 71.0
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 3.7e-43 178.3 121 71.1
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 9.1e-42 173.7 123 70.7
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.0e-41 172.6 120 71.7
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 3.5e-41 171.8 120 72.5
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 4.5e-41 171.4 98 88.8
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.3e-40 169.9 123 66.7
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 2.2e-40 169.1 120 71.7
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 2.9e-40 168.7 98 85.7
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 3.8e-40 168.3 120 70.0
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 5.0e-40 167.9 105 76.2
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.1e-39 166.8 89 89.9
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.1e-39 166.8 123 69.1
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 3.2e-39 165.2 98 83.7
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 5.5e-39 164.5 99 83.8
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.2e-38 163.3 104 78.8
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.0e-37 160.2 129 65.9
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.0e-37 158.3 89 85.4
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.5e-36 156.4 120 69.2
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 2.0e-36 156.0 125 67.2
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 5.7e-36 154.5 95 82.1
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 5.7e-36 154.5 118 67.8
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 9.8e-36 153.7 108 70.4
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 8.3e-35 150.6 124 63.7
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 8.3e-35 150.6 98 77.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 8.3e-35 150.6 98 77.6
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.8e-34 149.4 118 66.1
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.2e-33 146.7 109 67.9
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-32 143.3 99 71.7
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.9e-32 142.1 86 77.9
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.8e-32 141.7 86 81.4
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 6.5e-32 141.0 83 78.3
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.1e-31 140.2 102 71.6
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.7e-30 134.8 124 59.7
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 2.3e-29 132.5 65 98.5
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 5.2e-29 131.3 108 63.0
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 3.4e-28 128.6 116 60.3
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 5.7e-28 127.9 119 48.7
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 9.8e-28 127.1 88 63.6
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 2.8e-27 125.6 115 52.2
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 3.7e-27 125.2 85 75.3
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.4e-26 123.2 127 55.1
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 5.4e-26 121.3 117 49.6
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 3.5e-25 118.6 113 50.4
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.0e-24 117.1 113 48.7
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.3e-24 116.7 120 47.5
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 3.8e-24 115.2 130 50.0
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 6.6e-24 114.4 131 48.1
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 6.6e-24 114.4 123 48.0
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 6.6e-24 114.4 118 51.7
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 1.9e-23 112.8 115 47.0
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 7.3e-23 110.9 119 48.7
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.8e-21 106.3 106 49.1
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 8.9e-21 104.0 76 73.7
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 2.9e-19 99.0 61 80.3
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 3.2e-10 68.9 75 49.3
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.0e-08 63.9 35 82.9
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 3.0e-08 62.4 60 40.0


User provided reference genes

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