Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.9e-66 253.8 129 100.0
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.9e-63 245.7 129 97.7
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.5e-63 245.4 129 97.7
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 3.2e-63 245.0 129 96.1
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.2e-63 245.0 129 96.9
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 3.9e-61 238.0 125 97.6
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.2e-56 222.2 124 93.5
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 1.6e-54 216.1 126 84.1
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 1.6e-54 216.1 127 83.5
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 2.1e-54 215.7 127 83.5
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.1e-54 215.7 127 81.9
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 2.1e-54 215.7 127 82.7
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.1e-54 215.7 128 84.4
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 2.7e-54 215.3 127 83.5
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 2.7e-54 215.3 129 82.2
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 4.7e-54 214.5 129 82.2
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 6.1e-54 214.2 122 86.9
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 7.9e-54 213.8 126 83.3
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 7.9e-54 213.8 127 83.5
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 2.3e-53 212.2 127 82.7
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.3e-53 212.2 127 81.1
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 2.3e-53 212.2 127 81.1
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 3.0e-53 211.8 127 80.3
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.9e-53 211.5 125 83.2
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 5.2e-53 211.1 126 83.3
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 5.2e-53 211.1 127 80.3
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 5.2e-53 211.1 127 79.5
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 5.2e-53 211.1 126 80.2
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 6.7e-53 210.7 127 81.9
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.1e-52 209.9 125 83.2
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.5e-52 209.5 121 88.4
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.6e-52 208.8 120 85.8
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 4.4e-52 208.0 118 86.4
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 4.4e-52 208.0 120 85.8
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.4e-52 208.0 130 78.5
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 7.4e-52 207.2 127 79.5
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 9.7e-52 206.8 127 78.7
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.7e-51 206.1 122 82.0
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.2e-51 205.7 122 82.0
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 3.7e-51 204.9 122 83.6
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 3.7e-51 204.9 129 78.3
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 3.7e-51 204.9 127 81.1
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 4.8e-51 204.5 118 85.6
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 8.2e-51 203.8 127 80.3
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.1e-50 203.4 120 81.7
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 1.1e-50 203.4 120 82.5
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.4e-50 203.0 124 80.6
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.4e-50 203.0 127 78.0
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.4e-50 203.0 125 80.0
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 1.8e-50 202.6 128 75.8
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.1e-50 201.4 121 81.8
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 5.3e-50 201.1 124 81.5
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 9.1e-50 200.3 120 79.2
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.6e-49 199.5 122 82.0
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.6e-49 199.5 121 78.5
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 1.6e-49 199.5 127 76.4
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 2.0e-49 199.1 122 81.1
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.0e-49 199.1 122 80.3
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.0e-49 199.1 122 80.3
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.0e-49 199.1 121 79.3
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 2.6e-49 198.7 121 80.2
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 3.5e-49 198.4 128 78.1
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 4.5e-49 198.0 122 81.1
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 4.5e-49 198.0 122 78.7
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 4.5e-49 198.0 119 80.7
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 5.9e-49 197.6 121 80.2
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 5.9e-49 197.6 121 80.2
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 5.9e-49 197.6 122 78.7
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 7.7e-49 197.2 121 79.3
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 7.7e-49 197.2 121 79.3
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 7.7e-49 197.2 121 79.3
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 7.7e-49 197.2 121 79.3
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.7e-48 196.1 118 79.7
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.2e-48 195.7 119 79.0
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 2.9e-48 195.3 122 77.0
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.8e-48 194.9 127 78.0
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 6.5e-48 194.1 120 76.7
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 6.5e-48 194.1 121 77.7
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.5e-47 193.0 116 81.0
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.5e-47 193.0 122 78.7
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.5e-47 193.0 122 78.7
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.5e-47 193.0 125 77.6
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.5e-47 193.0 121 76.9
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.2e-47 191.8 122 77.9
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 4.2e-47 191.4 128 72.7
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.2e-47 191.4 122 77.9
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 5.5e-47 191.0 116 79.3
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 5.5e-47 191.0 122 77.9
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 9.4e-47 190.3 122 73.8
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.2e-46 189.9 114 81.6
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 2.1e-46 189.1 124 79.0
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 6.1e-46 187.6 117 76.9
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 6.1e-46 187.6 117 76.9
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 8.0e-46 187.2 117 77.8
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.0e-45 186.8 104 89.4
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.0e-45 186.8 108 88.0
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.8e-45 186.0 110 86.4
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 4.0e-45 184.9 113 80.5
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 5.2e-45 184.5 121 71.9
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.2e-44 183.3 117 75.2
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 4.4e-44 181.4 121 71.9
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 1.1e-42 176.8 123 71.5
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.8e-42 176.0 120 72.5
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 7.0e-42 174.1 98 89.8
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.6e-41 172.9 120 72.5
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 3.5e-41 171.8 120 68.3
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 3.5e-41 171.8 120 71.7
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 4.5e-41 171.4 98 86.7
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.0e-40 170.2 120 71.7
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.3e-40 169.9 105 76.2
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 1.7e-40 169.5 117 72.6
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 5.0e-40 167.9 98 84.7
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 8.5e-40 167.2 99 84.8
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.1e-39 166.8 89 89.9
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.2e-39 165.2 104 78.8
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.7e-38 161.4 89 86.5
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.8e-37 159.5 120 70.0
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 3.0e-37 158.7 125 68.0
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 4.0e-37 158.3 122 67.2
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 6.8e-37 157.5 118 68.6
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 8.8e-37 157.1 95 83.2
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 3.4e-36 155.2 108 70.4
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 1.3e-35 153.3 121 66.1
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.3e-35 153.3 98 78.6
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.3e-35 153.3 98 78.6
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 2.2e-35 152.5 118 66.9
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 7.0e-34 147.5 105 69.5
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.9e-33 144.4 86 82.6
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 5.9e-33 144.4 99 71.7
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.3e-32 143.3 102 72.5
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 6.5e-32 141.0 84 78.6
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 5.5e-31 137.9 82 76.8
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.6e-30 136.3 124 59.7
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 6.1e-30 134.4 108 63.9
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 6.8e-29 131.0 112 52.7
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.5e-28 129.8 116 60.3
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 2.0e-28 129.4 65 95.4
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 3.4e-28 128.6 115 53.0
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 9.8e-28 127.1 88 63.6
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-27 126.3 85 75.3
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.4e-26 123.2 121 57.0
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 4.1e-26 121.7 117 49.6
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 4.1e-26 121.7 113 51.3
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.2e-25 120.2 113 49.6
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.6e-25 119.8 120 48.3
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 1.3e-24 116.7 120 49.2
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 1.7e-24 116.3 115 47.8
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.7e-24 116.3 118 51.7
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 2.9e-24 115.5 128 50.0
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 6.6e-24 114.4 131 48.1
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 8.6e-24 114.0 119 49.6
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.1e-22 109.4 103 50.5
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.0e-21 107.1 76 75.0
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 3.4e-20 102.1 61 82.0
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 4.1e-10 68.6 75 49.3
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 3.5e-09 65.5 59 55.9
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 3.9e-08 62.0 53 45.3


User provided reference genes

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