Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 0.0e+00 1418.7 726 100.0
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 0.0e+00 1245.7 723 90.0
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 0.0e+00 1239.6 723 89.5
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 0.0e+00 1102.8 621 90.2
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 0.0e+00 1088.2 736 77.6
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 0.0e+00 1085.1 765 75.8
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 6.0e-308 1060.4 680 81.9
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 8.8e-259 897.1 724 65.5
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.7e-254 882.9 717 65.4
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 3.2e-253 878.6 722 63.7
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 1.2e-252 876.7 724 63.1
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 3.6e-252 875.2 741 64.1
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 1.4e-251 873.2 717 63.9
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 7.5e-250 867.5 721 63.4
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 2.8e-249 865.5 719 63.6
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 4.8e-249 864.8 720 63.8
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 5.3e-248 861.3 725 63.6
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 3.5e-247 858.6 751 62.7
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 1.6e-244 849.7 721 61.7
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 2.7e-244 849.0 729 62.1
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 1.5e-242 843.2 717 62.1
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 7.5e-242 840.9 726 61.7
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 1.3e-241 840.1 769 60.2
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 4.1e-240 835.1 724 62.0
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 2.7e-239 832.4 717 60.8
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 7.7e-239 830.9 725 60.8
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 3.8e-238 828.6 723 60.9
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 8.5e-238 827.4 727 60.2
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 8.5e-238 827.4 723 60.4
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 3.2e-237 825.5 727 60.2
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.2e-236 823.5 727 60.2
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 3.0e-235 818.9 713 61.0
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 7.5e-234 814.3 719 59.0
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.8e-232 809.7 730 59.7
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 7.0e-232 807.7 725 58.3
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 3.8e-230 802.0 716 59.9
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 1.9e-229 799.7 723 59.8
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 5.6e-229 798.1 728 57.8
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 7.3e-229 797.7 727 59.0
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 4.7e-228 795.0 730 59.0
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 2.9e-225 785.8 726 58.8
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 5.4e-224 781.6 712 57.9
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 5.9e-223 778.1 716 57.3
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 1.0e-222 777.3 729 57.6
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 2.3e-222 776.2 718 57.4
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 3.0e-222 775.8 638 63.3
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 3.9e-222 775.4 707 57.9
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 4.3e-221 771.9 717 58.0
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 3.6e-220 768.8 724 58.1
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.4e-219 766.9 714 58.1
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.4e-219 766.9 724 55.7
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 1.8e-219 766.5 718 57.0
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 2.4e-216 756.1 719 57.4
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 4.1e-216 755.4 677 59.5
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 9.2e-216 754.2 728 55.8
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 1.6e-215 753.4 722 56.8
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 6.6e-214 748.0 717 56.9
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 1.9e-213 746.5 712 56.6
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 3.3e-213 745.7 723 56.3
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 1.2e-212 743.8 717 56.5
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 1.6e-212 743.4 716 55.9
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 3.6e-212 742.3 719 55.1
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 5.2e-211 738.4 719 54.9
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 3.4e-210 735.7 719 55.9
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 7.5e-210 734.6 717 55.2
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 1.7e-209 733.4 716 54.7
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 1.9e-208 729.9 717 55.0
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 7.8e-207 724.5 715 54.7
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 1.0e-206 724.2 715 54.5
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 1.7e-206 723.4 726 54.0
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 2.3e-206 723.0 715 54.8
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 5.1e-206 721.8 715 54.7
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 2.0e-202 709.9 714 55.0
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 2.6e-202 709.5 717 54.0
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 4.9e-201 705.3 524 68.1
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 2.4e-200 703.0 636 59.3
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.3e-198 697.2 724 55.2
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 6.6e-198 694.9 697 53.9
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 2.1e-196 689.9 642 57.5
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 2.4e-192 676.4 715 51.6
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 6.6e-190 668.3 723 53.0
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 1.5e-189 667.2 718 51.7
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.3e-188 664.1 649 55.8
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 9.0e-187 657.9 720 51.9
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 8.4e-185 651.4 539 62.5
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.0e-182 642.9 717 51.2
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 8.4e-177 624.8 750 48.7
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 6.7e-174 615.1 728 49.5
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 1.5e-173 614.0 629 53.6
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 2.8e-172 609.8 732 48.0
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 6.9e-171 605.1 735 49.1
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 7.4e-165 585.1 685 48.6
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 1.2e-154 551.2 747 45.1
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 8.5e-153 545.0 523 56.2
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 1.3e-148 531.2 660 47.0
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 2.1e-135 487.3 744 41.7
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 2.7e-127 460.3 514 47.9
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 6.8e-126 455.7 741 42.2
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.0e-122 444.1 338 64.2
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 8.3e-108 395.6 319 60.2
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 4.1e-107 393.3 388 52.1
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 9.9e-69 265.8 311 54.7
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 8.7e-65 252.7 258 53.1
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.4e-37 161.0 107 71.0
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.5e-35 154.8 97 73.2
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.5e-35 154.8 97 72.2
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 4.4e-32 144.1 502 29.3
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 5.7e-32 143.7 93 69.9
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 9.7e-24 116.3 77 67.5
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 3.7e-23 114.4 77 68.8
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 6.1e-18 97.1 200 37.0
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 3.0e-17 94.7 47 93.6
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 2.0e-13 82.0 364 22.5
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 3.2e-11 74.7 183 30.6
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.2e-11 74.7 62 58.1
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 8.3e-07 60.1 51 54.9


User provided reference genes

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