Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 2.6e-149 532.3 330 100.0
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 3.9e-129 465.3 334 87.4
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 1.1e-123 447.2 327 89.3
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 1.7e-79 300.4 355 66.8
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 1.5e-59 234.2 322 50.3
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 1.2e-56 224.6 331 57.7
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 1.1e-51 208.0 295 50.2
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 3.2e-51 206.5 308 51.0
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 9.4e-51 204.9 289 49.5
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.7e-50 203.4 321 49.2
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 6.1e-50 202.2 338 46.7
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 8.0e-50 201.8 310 47.4
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 1.8e-49 200.7 294 48.3
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 2.3e-49 200.3 293 47.4
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 3.0e-49 199.9 302 47.4
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 5.2e-49 199.1 315 46.0
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 6.8e-49 198.7 295 49.2
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 6.8e-49 198.7 290 50.0
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 8.8e-49 198.4 303 47.9
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 8.8e-49 198.4 294 48.3
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.6e-48 196.8 283 48.1
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 9.8e-48 194.9 302 46.7
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 9.8e-48 194.9 283 47.7
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 1.3e-47 194.5 296 48.3
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 1.7e-47 194.1 297 48.8
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 3.7e-47 193.0 300 47.0
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 4.9e-47 192.6 287 48.1
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 4.9e-47 192.6 287 48.1
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 4.9e-47 192.6 293 47.8
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.9e-47 192.6 285 46.7
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 8.3e-47 191.8 305 46.2
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 8.3e-47 191.8 293 48.1
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.8e-46 190.7 340 47.6
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 2.4e-46 190.3 297 46.1
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 4.1e-46 189.5 333 42.9
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.2e-45 188.0 295 47.8
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.2e-45 188.0 330 45.2
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 2.0e-45 187.2 293 47.8
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.7e-45 186.8 295 46.1
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 2.7e-45 186.8 292 49.3
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 3.5e-45 186.4 292 46.9
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 5.9e-45 185.7 342 46.2
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.9e-45 185.7 328 45.4
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 5.9e-45 185.7 302 47.4
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 1.7e-44 184.1 286 46.5
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.3e-44 183.7 328 45.1
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 2.3e-44 183.7 290 48.6
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 2.9e-44 183.3 305 43.9
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 2.9e-44 183.3 291 47.4
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 3.8e-44 183.0 291 47.1
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 5.0e-44 182.6 292 44.9
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 6.6e-44 182.2 295 45.4
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 8.6e-44 181.8 293 45.7
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.1e-43 181.4 328 44.8
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.9e-43 180.6 295 46.8
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 3.3e-43 179.9 293 43.7
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 9.5e-43 178.3 319 45.8
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 3.6e-42 176.4 289 43.3
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 6.1e-42 175.6 291 43.6
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.8e-41 174.1 292 46.6
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.8e-41 174.1 312 42.9
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 3.0e-41 173.3 314 43.9
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 4.0e-41 172.9 327 41.3
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 4.0e-41 172.9 293 47.4
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 6.8e-41 172.2 294 45.6
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 6.8e-41 172.2 323 42.4
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 1.2e-40 171.4 260 48.5
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 2.0e-40 170.6 300 45.7
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 2.0e-40 170.6 261 48.7
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 4.4e-40 169.5 296 47.3
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 9.8e-40 168.3 290 43.8
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 2.2e-39 167.2 330 41.5
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 6.3e-39 165.6 285 48.8
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.4e-38 164.5 294 45.2
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 4.1e-38 162.9 252 47.2
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 7.0e-38 162.2 252 46.0
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 7.0e-38 162.2 246 46.7
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 9.2e-38 161.8 317 42.9
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 9.2e-38 161.8 291 45.0
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.2e-37 161.4 317 42.9
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 5.9e-37 159.1 287 43.2
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.0e-36 158.3 290 44.1
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 1.0e-36 158.3 292 43.5
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 3.9e-36 156.4 287 42.2
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 5.0e-36 156.0 317 41.6
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 5.0e-36 156.0 320 43.1
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 5.0e-36 156.0 289 41.5
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 6.6e-36 155.6 295 43.7
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 8.6e-36 155.2 297 42.4
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 1.1e-35 154.8 290 42.8
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 1.5e-35 154.5 361 42.7
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.9e-35 154.1 326 41.1
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 3.3e-35 153.3 293 47.1
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 5.6e-35 152.5 307 43.6
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 9.5e-35 151.8 295 43.1
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 4.7e-34 149.4 308 41.9
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 1.0e-33 148.3 302 43.7
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 6.8e-33 145.6 307 41.0
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 8.9e-33 145.2 306 43.1
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 8.9e-33 145.2 234 51.3
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.5e-32 144.4 306 41.8
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.5e-32 144.4 305 42.6
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 2.0e-32 144.1 299 45.8
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 4.4e-32 142.9 288 45.8
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 1.3e-31 141.4 310 41.3
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 1.3e-31 141.4 310 41.3
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 6.4e-31 139.0 309 39.8
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 8.3e-31 138.7 318 39.6
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 1.1e-30 138.3 263 41.8
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 1.1e-30 138.3 320 39.7
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 2.4e-30 137.1 308 41.2
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 2.4e-30 137.1 308 41.2
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 2.4e-30 137.1 245 42.9
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 3.2e-30 136.7 308 41.2
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 3.2e-30 136.7 243 43.2
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 3.2e-30 136.7 289 40.8
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 9.2e-30 135.2 287 47.4
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 1.3e-28 131.3 294 44.2
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 1.7e-28 131.0 252 41.3
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.9e-28 129.8 280 41.8
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 1.1e-27 128.3 172 52.3
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.9e-27 127.5 244 41.4
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.5e-27 127.1 290 38.3
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.2e-26 124.8 320 36.9
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 1.6e-26 124.4 279 38.4
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 2.8e-26 123.6 209 52.6
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 1.1e-25 121.7 301 38.9
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 3.1e-25 120.2 297 37.4
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 6.8e-25 119.0 271 40.6
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.4e-24 116.3 287 36.2
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 1.7e-23 114.4 296 40.2
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 3.7e-23 113.2 184 47.3
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 8.3e-23 112.1 293 37.5
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 1.4e-22 111.3 224 41.1
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 1.4e-22 111.3 143 53.8
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 3.2e-22 110.2 292 37.0
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 4.1e-22 109.8 298 40.3
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 2.1e-21 107.5 302 35.4
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 3.5e-21 106.7 259 34.4
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 3.5e-21 106.7 244 36.5
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 3.9e-20 103.2 184 46.2
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 5.1e-20 102.8 296 34.5
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 6.2e-18 95.9 224 40.6
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.2e-16 91.7 243 35.4
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.2e-16 91.7 243 35.4
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 2.0e-16 90.9 86 62.8
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 9.9e-16 88.6 291 32.0
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.2e-15 87.4 293 33.1
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 8.4e-15 85.5 285 33.0
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.4e-14 84.7 144 41.0
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 7.8e-13 79.0 288 31.2
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 8.6e-12 75.5 91 50.5
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 1.6e-10 71.2 114 48.2
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 8.1e-10 68.9 281 28.5
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 9.9e-08 62.0 71 50.7
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 5.4e-06 56.2 271 32.8
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 5.4e-06 56.2 329 24.3
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 5.4e-06 56.2 305 27.2
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 5.4e-06 56.2 256 31.6
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 7.1e-06 55.8 329 24.9
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 9.3e-06 55.5 281 28.5
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 9.3e-06 55.5 81 40.7


User provided reference genes

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