Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 2.3e-84 315.5 156 100.0
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 1.7e-82 309.3 156 97.4
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 5.6e-78 294.3 156 92.3
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 2.8e-77 292.0 156 91.0
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 6.8e-76 287.3 153 91.5
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 2.4e-73 278.9 151 88.1
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 5.4e-73 277.7 153 87.6
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 9.6e-70 266.9 170 80.0
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 1.7e-66 256.1 154 78.6
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 7.1e-65 250.8 150 78.0
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 2.1e-64 249.2 152 78.3
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 2.1e-64 249.2 153 78.4
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 2.7e-64 248.8 153 78.4
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 7.8e-64 247.3 154 77.3
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 2.3e-63 245.7 151 80.1
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 2.3e-63 245.7 150 76.7
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 5.1e-63 244.6 150 76.7
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 5.1e-63 244.6 153 77.1
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 6.6e-63 244.2 151 76.8
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 5.6e-62 241.1 154 75.3
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 5.6e-62 241.1 152 74.3
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 1.3e-61 240.0 150 74.0
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 1.6e-61 239.6 150 76.0
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 2.1e-61 239.2 150 73.3
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 2.8e-61 238.8 149 74.5
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 3.6e-61 238.4 154 70.1
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 1.4e-60 236.5 154 71.4
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 1.8e-60 236.1 153 72.5
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 3.1e-60 235.3 150 72.7
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 4.0e-60 235.0 150 72.7
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 4.0e-60 235.0 154 73.4
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 1.5e-59 233.0 154 71.4
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 2.6e-59 232.3 149 74.5
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 2.6e-59 232.3 149 71.1
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 3.4e-59 231.9 152 74.3
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 3.4e-59 231.9 153 71.2
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 4.5e-59 231.5 149 71.8
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 5.8e-59 231.1 151 74.2
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 7.6e-59 230.7 151 73.5
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 9.9e-59 230.3 153 69.3
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 1.3e-58 229.9 154 69.5
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 2.2e-58 229.2 148 74.3
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 2.2e-58 229.2 153 71.9
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 2.9e-58 228.8 152 73.0
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 2.9e-58 228.8 152 73.0
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 3.8e-58 228.4 152 73.0
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 1.1e-57 226.9 149 70.5
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 1.9e-57 226.1 149 71.1
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 2.4e-57 225.7 150 71.3
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 3.2e-57 225.3 150 70.7
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 3.2e-57 225.3 151 68.2
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 4.2e-57 224.9 154 72.1
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 5.4e-57 224.6 150 70.7
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 7.1e-57 224.2 158 70.3
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 9.3e-57 223.8 149 74.5
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 9.3e-57 223.8 150 70.0
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 1.6e-56 223.0 150 70.0
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 1.6e-56 223.0 150 70.0
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 4.6e-56 221.5 150 67.3
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 6.0e-56 221.1 150 68.7
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 7.9e-56 220.7 149 69.8
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 3.9e-55 218.4 149 69.8
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 6.7e-55 217.6 150 68.7
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 6.7e-55 217.6 150 72.0
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 1.1e-54 216.9 149 68.5
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 3.3e-54 215.3 150 70.0
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 3.3e-54 215.3 151 70.2
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 3.3e-54 215.3 149 65.8
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 3.3e-54 215.3 149 68.5
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 4.3e-54 214.9 150 70.0
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 5.6e-54 214.5 161 64.0
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 1.6e-53 213.0 154 66.9
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 1.6e-53 213.0 154 66.9
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 1.6e-53 213.0 139 72.7
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 3.7e-53 211.8 150 70.0
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 3.7e-53 211.8 149 65.1
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 4.8e-53 211.5 150 70.7
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 1.8e-52 209.5 151 64.9
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.4e-52 209.1 150 70.0
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 3.1e-52 208.8 150 68.0
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 3.1e-52 208.8 150 67.3
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 4.0e-52 208.4 133 72.2
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 6.9e-52 207.6 150 70.0
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 9.0e-52 207.2 153 67.3
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 1.5e-51 206.5 154 66.2
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 4.5e-51 204.9 153 63.4
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 1.3e-50 203.4 152 63.2
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 2.4e-49 199.1 152 61.8
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 1.6e-48 196.4 162 59.9
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 6.0e-48 194.5 153 59.5
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 7.9e-48 194.1 153 60.1
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 1.3e-47 193.4 174 58.0
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 1.3e-45 186.8 151 61.6
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 1.6e-45 186.4 151 61.6
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.8e-45 185.7 133 65.4
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 2.6e-43 179.1 153 55.6
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 1.3e-42 176.8 135 62.2
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 1.3e-39 166.8 95 80.0
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 2.2e-37 159.5 166 51.2
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 1.8e-36 156.4 152 53.3
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 1.5e-35 153.3 93 77.4
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 2.2e-34 149.4 90 77.8
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 2.1e-32 142.9 102 66.7
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 6.1e-32 141.4 100 67.0
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 1.7e-29 133.3 78 76.9
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 4.8e-29 131.7 169 46.7
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 2.9e-26 122.5 76 76.3
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 2.9e-26 122.5 76 76.3
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 5.5e-25 118.2 76 72.4
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 8.8e-23 110.9 81 71.6
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 1.1e-22 110.5 76 71.1
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 1.5e-22 110.2 77 70.1
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 1.9e-17 93.2 67 62.7
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 6.7e-15 84.7 66 59.1
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 2.6e-14 82.8 100 45.0
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 4.8e-13 78.6 51 62.7
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 8.5e-10 67.8 78 43.6
Cre17.g705950 Chlamydomonas reinhardtii HOM05D007014 ORTHO05D008894 1.2e-08 63.9 125 32.8
Hund03009 Selenicereus undatus HOM05D004398 ORTHO05D005268 1.2e-06 57.4 74 35.1
Nn2g11907 Nelumbo nucifera HOM05D004398 ORTHO05D005268 2.6e-06 56.2 73 35.6
Peaxi162Scf00251g01121 Petunia axillaris HOM05D004398 ORTHO05D005268 2.6e-06 56.2 66 39.4
CDE02G1057 Ceratophyllum demersum HOM05D004398 ORTHO05D005268 3.3e-06 55.8 65 41.5
Nitab4.5_0000508g0250 Nicotiana tabacum HOM05D004398 ORTHO05D005268 3.3e-06 55.8 67 40.3
MD15G1118400 Malus domestica HOM05D004398 ORTHO05D005268 4.4e-06 55.5 67 37.3
Phvul.008G289800 Phaseolus vulgaris HOM05D004398 ORTHO05D005268 4.4e-06 55.5 67 37.3
VMungo0647G1556 Vigna mungo HOM05D004398 ORTHO05D005268 4.4e-06 55.5 67 37.3
BraA02t05080Z Brassica rapa HOM05D004398 ORTHO05D005268 5.7e-06 55.1 65 41.5
RcHm_v2.0_Chr6g0298801 Rosa chinensis HOM05D004398 ORTHO05D005268 7.5e-06 54.7 67 38.8
Actinidia13266 Actinidia chinensis HOM05D004398 ORTHO05D005268 9.7e-06 54.3 67 38.8
CAN.G211.13 Capsicum annuum HOM05D004398 ORTHO05D005268 9.7e-06 54.3 67 37.3
Cc11_g01650 Coffea canephora HOM05D004398 ORTHO05D005268 9.7e-06 54.3 67 37.3
MD08G1142000 Malus domestica HOM05D004398 ORTHO05D005268 9.7e-06 54.3 64 37.5
Manes.16G118300 Manihot esculenta HOM05D004398 ORTHO05D005268 9.7e-06 54.3 67 37.3
Nitab4.5_0002339g0050 Nicotiana tabacum HOM05D004398 ORTHO05D005268 9.7e-06 54.3 67 38.8
Peaxi162Scf01343g00154 Petunia axillaris HOM05D004398 ORTHO05D005268 9.7e-06 54.3 72 38.9


User provided reference genes

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