Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 0.0e+00 1486.5 724 100.0
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 0.0e+00 1436.0 725 96.8
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 0.0e+00 1431.8 725 96.7
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 0.0e+00 1270.4 725 85.7
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 0.0e+00 1261.5 720 85.7
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 0.0e+00 1197.2 718 81.6
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 0.0e+00 1194.9 718 81.3
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 0.0e+00 1185.6 719 81.6
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 0.0e+00 1126.7 725 77.2
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 0.0e+00 1085.5 725 74.6
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 9.9e-311 1069.7 718 74.1
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 3.0e-299 1031.6 725 71.9
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 2.4e-296 1021.9 728 70.7
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 2.0e-295 1018.8 718 70.1
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 1.0e-291 1006.5 718 69.6
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 1.5e-287 992.6 719 69.1
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 6.0e-284 980.7 729 66.5
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 3.1e-280 968.4 719 67.6
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 1.5e-279 966.1 732 66.4
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 7.1e-277 957.2 730 66.6
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 1.6e-276 956.1 734 66.3
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 3.5e-276 954.9 727 65.6
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 1.3e-273 946.4 726 65.6
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 3.7e-273 944.9 565 80.0
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 1.5e-271 939.5 721 65.7
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 1.0e-270 936.8 741 64.9
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 1.7e-270 936.0 726 67.4
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 2.9e-270 935.3 717 65.6
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 6.3e-265 917.5 720 64.4
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 1.8e-264 916.0 735 64.5
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 8.5e-262 907.1 739 62.5
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 1.1e-261 906.7 731 63.1
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 3.2e-261 905.2 720 64.2
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.7e-260 902.1 719 64.0
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 4.6e-260 901.4 730 62.9
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 2.3e-259 899.0 727 63.1
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.3e-259 899.0 719 63.7
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 3.9e-259 898.3 730 62.7
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 5.1e-259 897.9 719 63.7
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 3.3e-258 895.2 733 62.8
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 2.2e-257 892.5 733 62.5
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 1.1e-256 890.2 730 62.6
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 2.4e-256 889.0 725 61.7
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 1.5e-255 886.3 736 61.8
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 4.5e-255 884.8 721 62.8
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 1.3e-254 883.2 722 62.0
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 2.2e-254 882.5 724 61.5
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 3.8e-254 881.7 731 62.1
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 3.2e-253 878.6 717 62.3
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 5.5e-253 877.9 724 63.0
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 8.8e-251 870.5 724 60.8
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 8.8e-251 870.5 729 62.1
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 9.7e-250 867.1 722 59.7
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 1.7e-249 866.3 726 62.5
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 1.1e-248 863.6 739 60.6
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 7.0e-248 860.9 721 61.0
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 5.9e-247 857.8 733 59.5
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 2.7e-244 849.0 724 60.5
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 1.0e-243 847.0 727 59.4
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 1.8e-243 846.3 723 60.7
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 8.8e-243 844.0 721 59.9
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 3.3e-242 842.0 729 59.1
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 5.7e-242 841.3 737 57.4
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 3.7e-241 838.6 726 57.4
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 8.2e-241 837.4 720 59.3
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 1.8e-240 836.3 725 58.8
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 3.1e-240 835.5 725 60.3
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 4.5e-239 831.6 724 58.0
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 2.2e-238 829.3 725 58.3
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 3.8e-238 828.6 721 58.8
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 5.5e-237 824.7 727 58.7
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 3.6e-236 822.0 724 56.9
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 8.8e-235 817.4 723 59.3
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 1.2e-234 817.0 721 58.0
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 3.4e-234 815.5 716 57.5
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 1.7e-233 813.1 721 58.0
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 6.3e-233 811.2 748 57.8
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 2.4e-232 809.3 728 58.4
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 5.3e-232 808.1 717 57.7
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 1.2e-231 807.0 720 58.2
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 2.0e-231 806.2 716 57.1
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 2.2e-230 802.7 731 57.2
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 2.9e-230 802.4 721 58.5
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 2.9e-230 802.4 727 56.9
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 1.9e-229 799.7 748 57.1
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 4.2e-229 798.5 716 56.7
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 4.2e-229 798.5 727 58.3
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 5.5e-229 798.1 721 58.3
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 7.2e-229 797.7 721 58.3
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 2.7e-228 795.8 721 58.1
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 8.0e-228 794.3 721 58.1
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 3.0e-227 792.3 721 57.8
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 3.0e-227 792.3 721 57.8
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 3.0e-227 792.3 721 57.8
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 3.0e-227 792.3 726 57.9
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 4.0e-227 792.0 728 55.2
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 6.8e-227 791.2 739 56.2
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 9.8e-226 787.3 729 57.3
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 9.8e-226 787.3 724 57.7
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 9.8e-226 787.3 718 57.7
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 2.2e-225 786.2 733 57.3
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 2.8e-225 785.8 716 55.7
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 7.0e-224 781.2 719 54.8
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.5e-223 778.9 719 54.9
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 1.3e-222 776.9 726 56.9
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 1.7e-222 776.5 729 57.8
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 3.8e-222 775.4 737 54.0
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 9.5e-221 770.8 722 55.5
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 4.0e-219 765.4 717 57.5
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 4.3e-213 745.3 727 54.5
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 5.8e-210 734.9 733 53.2
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 1.7e-206 723.4 728 53.7
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 6.2e-204 714.9 719 52.2
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 3.4e-202 709.1 711 52.0
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 3.4e-202 709.1 576 61.8
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.9e-201 706.1 711 51.8
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 1.1e-200 704.1 723 53.8
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 4.1e-200 702.2 718 52.4
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 3.4e-194 682.6 707 52.2
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 9.9e-194 681.0 686 52.3
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 5.4e-192 675.2 721 49.8
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 3.5e-191 672.5 698 52.1
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 2.2e-185 653.3 721 48.4
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 6.0e-183 645.2 845 43.3
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 3.4e-178 629.4 732 49.5
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 2.1e-172 610.1 709 47.0
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 9.0e-171 604.7 495 62.2
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 2.0e-170 603.6 741 46.0
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 2.6e-170 603.2 741 45.6
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 6.9e-163 578.6 750 44.8
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 3.5e-159 566.2 766 42.4
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 1.6e-156 557.4 813 41.5
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 6.1e-151 538.9 572 51.7
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 3.9e-150 536.2 737 41.8
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 3.9e-150 536.2 531 52.0
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 2.3e-126 457.2 353 65.7
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 4.5e-122 443.0 359 63.5
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 4.2e-112 409.8 438 50.5
RcHm_v2.0_Chr2g0128401 Rosa chinensis HOM05D003819 ORTHO05D005291 4.2e-112 409.8 348 60.3
unitig_85.g27373 Utricularia gibba HOM05D003819 ORTHO05D005291 1.4e-110 404.8 331 60.4
SHI10509 Sapria himalayana HOM05D003819 ORTHO05D005291 1.2e-109 401.7 386 52.6
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 1.0e-105 388.7 928 32.2
Oeu053232.1 Olea europaea HOM05D003819 ORTHO05D005291 8.9e-102 375.6 422 49.8
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 1.3e-92 345.1 231 74.0
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 1.8e-78 298.1 451 40.4
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 1.9e-72 278.1 413 39.7
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 1.5e-53 215.3 177 63.8
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 4.5e-45 187.2 146 58.9
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 2.9e-44 184.5 473 31.5
Dinv24544 Davidia involucrata HOM05D003819 ORTHO05D005291 1.0e-36 159.5 150 51.3
AUR62037398 Chenopodium quinoa HOM05D003819 ORTHO05D005291 1.7e-36 158.7 99 77.8
FvH4_4g05521 Fragaria vesca HOM05D003819 ORTHO05D005291 2.0e-29 135.2 117 57.3
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 2.2e-28 131.7 149 50.3
Cc02_g34240 Coffea canephora HOM05D003819 ORTHO05D023588 4.6e-26 124.0 85 63.5
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 1.0e-25 122.9 103 55.3
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 1.0e-25 122.9 103 55.3
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 3.3e-24 117.9 77 70.1
Lalb_Chr14g0367511 Lupinus albus HOM05D003819 ORTHO05D005291 9.7e-24 116.3 78 69.2
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 1.3e-23 115.9 82 64.6
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 1.3e-23 115.9 157 37.6
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 1.1e-19 102.8 94 54.3
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 1.1e-19 102.8 94 54.3
Nn1g05873 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.9e-19 102.1 73 68.5
FvH4_2g05661 Fragaria vesca HOM05D003819 ORTHO05D025473 1.2e-18 99.4 119 49.6
FvH4_2g12921 Fragaria vesca HOM05D003819 ORTHO05D025473 1.0e-17 96.3 97 53.6
Mapoly0086s0086 Marchantia polymorpha HOM05D003819 ORTHO05D038376 1.7e-15 89.0 451 22.6
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 6.3e-15 87.0 80 57.5
Haze_22749 Corylus avellana HOM05D003819 ORTHO05D005291 1.4e-14 85.9 77 57.1
Cc00_g06350 Coffea canephora HOM05D003819 ORTHO05D023588 1.2e-13 82.8 170 33.5
Nn1g05663 Nelumbo nucifera HOM05D003819 ORTHO05D019686 4.5e-13 80.9 89 51.7
Nn5g28220 Nelumbo nucifera HOM05D003819 ORTHO05D019686 7.7e-13 80.1 52 71.2
Psat1g205040 Pisum sativum HOM05D003819 ORTHO05D005291 1.7e-12 79.0 214 29.0
Psat7g136520 Pisum sativum HOM05D003819 ORTHO05D005291 6.5e-12 77.0 80 52.5
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 2.1e-10 72.0 48 68.8
BcaC02g12428 Brassica carinata HOM05D003819 ORTHO05D032918 4.0e-09 67.8 68 50.0
C04p03970 Brassica napus HOM05D003819 ORTHO05D032918 4.0e-09 67.8 59 57.6
AagrBONN_evm.TU.Sc2ySwM_228.4816 Anthoceros agrestis HOM05D003819 ORTHO05D038376 2.6e-08 65.1 195 32.8
Aqoxy7G03215 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 4.4e-08 64.3 61 45.9
SMO115G0078 Selaginella moellendorffii HOM05D001905 ORTHO05D001820 5.7e-08 63.9 428 25.2
BolC4t22033H Brassica oleracea HOM05D003819 ORTHO05D032918 1.7e-07 62.4 59 52.5
Phvul.011G007400 Phaseolus vulgaris HOM05D002503 ORTHO05D002810 3.1e-06 58.2 224 25.4


User provided reference genes

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