Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007799 Solanum tuberosum HOM05D004117 ORTHO05D004520 1.3e-191 672.9 339 100.0
Solyc12g010990.3 Solanum lycopersicum HOM05D004117 ORTHO05D004520 2.0e-72 276.9 323 54.8
Sopen12g006350 Solanum pennellii HOM05D004117 ORTHO05D004520 5.9e-64 248.8 317 51.7
CAN.G486.15 Capsicum annuum HOM05D004117 ORTHO05D004520 6.5e-63 245.4 322 50.3
Peaxi162Scf00807g00047 Petunia axillaris HOM05D004117 ORTHO05D004520 3.0e-60 236.5 314 51.3
Solyc07g055700.2 Solanum lycopersicum HOM05D004117 ORTHO05D004520 9.7e-51 204.9 317 45.7
Sopen07g029060 Solanum pennellii HOM05D004117 ORTHO05D004520 9.7e-51 204.9 317 45.7
Nitab4.5_0005259g0030 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.8e-50 203.4 349 42.7
Dinv11422 Davidia involucrata HOM05D004117 ORTHO05D004520 8.2e-50 201.8 316 44.0
Peaxi162Scf00154g01022 Petunia axillaris HOM05D004117 ORTHO05D004520 5.3e-49 199.1 316 45.3
Thecc.01G156100 Theobroma cacao HOM05D004117 ORTHO05D004520 9.1e-49 198.4 319 44.5
Potri.006G278700 Populus trichocarpa HOM05D004117 ORTHO05D004520 3.5e-48 196.4 343 42.9
Migut.M00208 Erythranthe guttata HOM05D004117 ORTHO05D004520 5.9e-48 195.7 316 44.6
EL10Ac9g21032 Beta vulgaris HOM05D004117 ORTHO05D004520 2.2e-47 193.7 316 43.4
Duzib264G0691 Durio zibethinus HOM05D004117 ORTHO05D004520 1.1e-46 191.4 315 44.1
Dinv03089 Davidia involucrata HOM05D004117 ORTHO05D004520 1.4e-46 191.0 314 42.7
Hma1.2p1_0178F.1_g078380 Hydrangea macrophylla HOM05D004117 ORTHO05D004520 1.4e-46 191.0 314 43.6
CSS0026162 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 3.2e-46 189.9 316 42.7
Oeu032129.1 Olea europaea HOM05D004117 ORTHO05D004520 1.2e-45 188.0 253 48.6
FAN14G3113 Fragaria x ananassa HOM05D004117 ORTHO05D004520 2.1e-45 187.2 348 42.0
Duzib147G1030 Durio zibethinus HOM05D004117 ORTHO05D004520 2.7e-45 186.8 316 43.4
FAN02G0254 Fragaria x ananassa HOM05D004117 ORTHO05D004520 6.1e-45 185.7 347 41.8
CiPaw.04G134900 Carya illinoinensis HOM05D004117 ORTHO05D004520 1.8e-44 184.1 312 42.0
Manes.01G129950 Manihot esculenta HOM05D004117 ORTHO05D004520 2.3e-44 183.7 311 43.1
Manes.02G087500 Manihot esculenta HOM05D004117 ORTHO05D004520 3.9e-44 183.0 313 42.2
Ah.01g004740 Amaranthus hybridus HOM05D004117 ORTHO05D004520 6.7e-44 182.2 228 53.5
Eucgr.A01947 Eucalyptus grandis HOM05D004117 ORTHO05D004520 8.8e-44 181.8 313 40.9
TPR.G22233 Trifolium pratense HOM05D004117 ORTHO05D004520 1.1e-43 181.4 314 43.9
Phvul.006G038200 Phaseolus vulgaris HOM05D004117 ORTHO05D004520 1.5e-43 181.0 312 43.6
SGA_v2.0_scaffold46G17443 Striga asiatica HOM05D004117 ORTHO05D004520 1.5e-43 181.0 311 43.1
Atru.chr6.3571 Acer truncatum HOM05D004117 ORTHO05D004520 2.0e-43 180.6 217 53.0
Actinidia11177 Actinidia chinensis HOM05D004117 ORTHO05D004520 2.0e-43 180.6 317 41.3
Gohir.A11G059900 Gossypium hirsutum HOM05D004117 ORTHO05D004520 2.0e-43 180.6 308 41.9
Gohir.D11G064000 Gossypium hirsutum HOM05D004117 ORTHO05D004520 2.0e-43 180.6 308 41.9
Gorai.007G069200 Gossypium raimondii HOM05D004117 ORTHO05D004520 2.0e-43 180.6 308 41.9
Lj1C629G7 Lonicera japonica HOM05D004117 ORTHO05D004520 2.6e-43 180.3 344 39.5
Prupe.3G108900 Prunus persica HOM05D004117 ORTHO05D004520 2.6e-43 180.3 315 43.8
RcHm_v2.0_Chr2g0131361 Rosa chinensis HOM05D004117 ORTHO05D004520 2.6e-43 180.3 315 44.1
Oeu028661.1 Olea europaea HOM05D004117 ORTHO05D004520 4.4e-43 179.5 244 48.8
Gohir.D04G039266 Gossypium hirsutum HOM05D004117 ORTHO05D004520 7.4e-43 178.7 318 41.5
Nn3g21103 Nelumbo nucifera HOM05D004117 ORTHO05D004520 9.7e-43 178.3 314 43.0
Gorai.012G044300 Gossypium raimondii HOM05D004117 ORTHO05D004520 1.7e-42 177.6 329 40.4
Gohir.A05G376700 Gossypium hirsutum HOM05D004117 ORTHO05D004520 2.2e-42 177.2 318 41.2
arahy.Tifrunner.gnm1.ann1.A5IPPM Arachis hypogaea HOM05D004117 ORTHO05D004520 2.8e-42 176.8 319 42.9
PGR042G1715 Punica granatum HOM05D004117 ORTHO05D004520 2.8e-42 176.8 315 41.0
Medtr8g016090 Medicago truncatula HOM05D004117 ORTHO05D004520 3.7e-42 176.4 314 42.7
GSVIVG01020780001 Vitis vinifera HOM05D004117 ORTHO05D004520 4.8e-42 176.0 217 50.7
HanXRQChr01g0028621 Helianthus annuus HOM05D004117 ORTHO05D004520 8.2e-42 175.3 312 42.0
Sp1g05230 Schrenkiella parvula HOM05D004117 ORTHO05D004520 1.4e-41 174.5 316 39.9
MD09G1233800 Malus domestica HOM05D004117 ORTHO05D004520 1.8e-41 174.1 316 42.4
PSO675G6070 Papaver somniferum HOM05D004117 ORTHO05D004520 1.8e-41 174.1 313 41.2
Lj6g0002139 Lotus japonicus HOM05D004117 ORTHO05D004520 2.4e-41 173.7 314 43.0
Glyma.18G102500 Glycine max HOM05D004117 ORTHO05D004520 3.1e-41 173.3 314 42.7
Nn6g34497 Nelumbo nucifera HOM05D004117 ORTHO05D004520 3.1e-41 173.3 313 40.3
SGA_v2.0_scaffold9G04867 Striga asiatica HOM05D004117 ORTHO05D004520 3.1e-41 173.3 224 53.1
Thhalv10007752m.g Eutrema salsugineum HOM05D004117 ORTHO05D004520 5.3e-41 172.6 316 39.9
MD17G1230200 Malus domestica HOM05D004117 ORTHO05D004520 7.0e-41 172.2 316 42.4
ECA233G4030 Erigeron canadensis HOM05D004117 ORTHO05D004520 9.1e-41 171.8 217 51.2
Glyma.09G101300 Glycine max HOM05D004117 ORTHO05D004520 1.2e-40 171.4 314 42.4
Psat4g191560 Pisum sativum HOM05D004117 ORTHO05D004520 1.2e-40 171.4 314 41.7
Aqoxy1G01993 Aquilegia oxysepala HOM05D004117 ORTHO05D004520 1.6e-40 171.0 230 49.1
arahy.Tifrunner.gnm1.ann1.X0GQC6 Arachis hypogaea HOM05D004117 ORTHO05D004520 1.6e-40 171.0 319 42.0
Sc21g0004310 Simmondsia chinensis HOM05D004117 ORTHO05D004520 1.6e-40 171.0 315 40.0
VMungo0540G1454 Vigna mungo HOM05D004117 ORTHO05D004520 2.0e-40 170.6 312 41.0
Nitab4.5_0003479g0010 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.6e-40 170.2 292 43.2
PSO541G2160 Papaver somniferum HOM05D004117 ORTHO05D004520 2.6e-40 170.2 230 49.6
FAN05G5128 Fragaria x ananassa HOM05D004117 ORTHO05D004520 1.0e-39 168.3 217 53.5
Migut.H02117 Erythranthe guttata HOM05D004117 ORTHO05D004520 1.3e-39 167.9 245 48.6
HanXRQChr12g0367511 Helianthus annuus HOM05D004117 ORTHO05D004520 1.3e-39 167.9 217 49.8
CARHR006080 Cardamine hirsuta HOM05D004117 ORTHO05D004520 2.2e-39 167.2 318 39.3
CDE09G0584 Ceratophyllum demersum HOM05D004117 ORTHO05D004520 2.2e-39 167.2 230 48.3
THA.LOC104800830 Tarenaya hassleriana HOM05D004117 ORTHO05D004520 2.9e-39 166.8 314 39.8
Zm00001eb376680 Zea mays HOM05D004117 ORTHO05D004520 2.9e-39 166.8 312 39.1
BolC5t29244H Brassica oleracea HOM05D004117 ORTHO05D004520 3.8e-39 166.4 316 38.6
A10p05130 Brassica napus HOM05D004117 ORTHO05D004520 6.5e-39 165.6 316 38.9
BraA10t42778Z Brassica rapa HOM05D004117 ORTHO05D004520 6.5e-39 165.6 316 38.6
ECA234G3208 Erigeron canadensis HOM05D004117 ORTHO05D004520 8.5e-39 165.2 217 49.3
Lsat_1_v5_gn_8_31821 Lactuca sativa HOM05D004117 ORTHO05D004520 8.5e-39 165.2 217 49.3
A08p35950 Brassica napus HOM05D004117 ORTHO05D004520 1.1e-38 164.9 316 38.6
C05p04720 Brassica napus HOM05D004117 ORTHO05D004520 1.9e-38 164.1 316 38.3
CANSAT64G1854 Cannabis sativa HOM05D004117 ORTHO05D004520 1.9e-38 164.1 344 39.8
Zm00001eb270990 Zea mays HOM05D004117 ORTHO05D004520 1.9e-38 164.1 217 47.5
BcaB03g13416 Brassica carinata HOM05D004117 ORTHO05D004520 2.5e-38 163.7 316 38.3
HPP92_000571 Vanilla planifolia HOM05D004117 ORTHO05D004520 2.5e-38 163.7 217 48.8
Ah.01g016090 Amaranthus hybridus HOM05D004117 ORTHO05D004520 4.2e-38 162.9 217 47.9
C08p02610 Brassica napus HOM05D004117 ORTHO05D004520 4.2e-38 162.9 316 38.3
BolC8t47054H Brassica oleracea HOM05D004117 ORTHO05D004520 4.2e-38 162.9 316 38.3
Sabra06G0216200 Salix brachista HOM05D004117 ORTHO05D004520 4.2e-38 162.9 244 45.5
BcaC07g36811 Brassica carinata HOM05D004117 ORTHO05D004520 5.5e-38 162.5 320 37.8
AL1G16480 Arabidopsis lyrata HOM05D004117 ORTHO05D004520 7.2e-38 162.2 316 38.6
Sc12g0003810 Simmondsia chinensis HOM05D004117 ORTHO05D004520 7.2e-38 162.2 314 38.5
vmacro12418 Vaccinium macrocarpon HOM05D004117 ORTHO05D004520 9.4e-38 161.8 248 44.8
Sed0017214 Sechium edule HOM05D004117 ORTHO05D004520 1.2e-37 161.4 312 40.1
BraA08t35503Z Brassica rapa HOM05D004117 ORTHO05D004520 2.7e-37 160.2 324 37.3
AT1G06470 Arabidopsis thaliana HOM05D004117 ORTHO05D004520 4.7e-37 159.5 316 38.0
Lalb_Chr15g0080421 Lupinus albus HOM05D004117 ORTHO05D004520 4.7e-37 159.5 313 41.5
Lalb_Chr10g0106881 Lupinus albus HOM05D004117 ORTHO05D004520 1.4e-36 157.9 313 39.6
CsaV3_6G037880 Cucumis sativus L. HOM05D004117 ORTHO05D004520 8.8e-36 155.2 217 48.8
Carub.0001s0583 Capsella rubella HOM05D004117 ORTHO05D004520 1.5e-35 154.5 316 37.3
arahy.Tifrunner.gnm1.ann1.E1YPH0 Arachis hypogaea HOM05D004117 ORTHO05D004520 2.0e-35 154.1 330 37.3
FvH4_6g27881 Fragaria vesca HOM05D004117 ORTHO05D004520 2.0e-35 154.1 247 43.3
Lsat_1_v5_gn_4_26681 Lactuca sativa HOM05D004117 ORTHO05D004520 2.6e-35 153.7 217 47.0
Nitab4.5_0000990g0060 Nicotiana tabacum HOM05D004117 ORTHO05D004520 4.4e-35 152.9 324 39.2
Os01g0749900 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 4.4e-35 152.9 217 46.1
HPP92_009031 Vanilla planifolia HOM05D004117 ORTHO05D004520 7.5e-35 152.1 230 43.9
Zm00001eb370980 Zea mays HOM05D004117 ORTHO05D004520 2.4e-33 147.1 217 43.3
Zm00001eb153320 Zea mays HOM05D004117 ORTHO05D004520 3.1e-33 146.7 157 51.6
Ciclev10018149m.g Citrus clementina HOM05D004117 ORTHO05D004520 7.7e-32 142.1 248 41.5
BcaB02g06797 Brassica carinata HOM05D004117 ORTHO05D004520 1.7e-31 141.0 305 37.0
Haze_13436 Corylus avellana HOM05D004117 ORTHO05D004520 6.5e-31 139.0 150 50.7
Hund07729 Selenicereus undatus HOM05D004117 ORTHO05D004520 1.9e-30 137.5 248 39.9
BcaC07g36812 Brassica carinata HOM05D004117 ORTHO05D004520 4.7e-29 132.9 317 34.4
Aa31LG1G7530 Aethionema arabicum HOM05D004117 ORTHO05D004520 1.8e-28 131.0 314 34.7
Pp3c3_5740 Physcomitrium patens HOM05D004117 ORTHO05D004520 1.8e-28 131.0 217 40.1
SalBow7G2879 Salvia bowleyana HOM05D004117 ORTHO05D004520 2.6e-27 127.1 292 33.9
DCAR_010149 Daucus carota HOM05D004117 ORTHO05D004520 8.3e-26 122.1 293 36.5
Mapoly0038s0060 Marchantia polymorpha HOM05D004117 ORTHO05D004520 1.1e-25 121.7 217 38.2
SMO358G0570 Selaginella moellendorffii HOM05D004117 ORTHO05D004520 2.4e-25 120.6 233 37.8
unitig_62.g23113 Utricularia gibba HOM05D004117 ORTHO05D004520 2.7e-24 117.1 134 48.5
Pp3c2_29630 Physcomitrium patens HOM05D004117 ORTHO05D004520 2.9e-23 113.6 214 35.5
QL08p042883 Quercus lobata HOM05D004117 ORTHO05D004520 1.1e-22 111.7 159 42.8
SalBow1G0209 Salvia bowleyana HOM05D004117 ORTHO05D004520 4.2e-22 109.8 69 73.9
SalBow1G6942 Salvia bowleyana HOM05D004117 ORTHO05D004520 4.2e-22 109.8 69 73.9
SalBow6G2076 Salvia bowleyana HOM05D004117 ORTHO05D004520 4.2e-22 109.8 69 73.9
SalBow8G2638 Salvia bowleyana HOM05D004117 ORTHO05D004520 4.2e-22 109.8 69 73.9
arahy.Tifrunner.gnm1.ann1.EL27YX Arachis hypogaea HOM05D004117 ORTHO05D004520 2.1e-21 107.5 290 35.5
arahy.Tifrunner.gnm1.ann1.S8R0TP Arachis hypogaea HOM05D004117 ORTHO05D004520 6.1e-21 105.9 295 35.6
CAN.G803.16 Capsicum annuum HOM05D004117 ORTHO05D004520 8.0e-21 105.5 155 46.5
ClCG09G020800 Citrullus lanatus HOM05D004117 ORTHO05D004520 4.0e-20 103.2 292 31.5
ATR0857G001 Amborella trichopoda HOM05D004117 ORTHO05D004520 6.8e-20 102.4 165 41.2
SalBow7G1867 Salvia bowleyana HOM05D004117 ORTHO05D004520 1.5e-19 101.3 108 61.1
MELO3C014450.2 Cucumis melo HOM05D004117 ORTHO05D004520 2.6e-19 100.5 82 61.0
Lsat_1_v5_gn_3_102840 Lactuca sativa HOM05D001936 ORTHO05D004520 7.5e-19 99.0 62 77.4
CAN.G803.15 Capsicum annuum HOM05D004117 ORTHO05D004520 8.3e-18 95.5 103 62.1
AUR62031790 Chenopodium quinoa HOM05D004117 ORTHO05D004520 7.0e-17 92.4 106 57.5
Rhsim06G0124300 Rhododendron simsii HOM05D004117 ORTHO05D004520 1.6e-16 91.3 106 56.6
COL.COLO4_33652 Corchorus olitorius HOM05D004117 ORTHO05D004520 2.0e-16 90.9 320 32.8
FAN09G0194 Fragaria x ananassa HOM05D004117 ORTHO05D004520 2.0e-16 90.9 104 59.6
PGSC0003DMG400007802 Solanum tuberosum HOM05D000403 ORTHO05D000350 5.9e-16 89.4 100 53.0
DCAR_014033 Daucus carota HOM05D004117 ORTHO05D004520 2.3e-15 87.4 103 55.3
Lsat_1_v5_gn_5_110861 Lactuca sativa HOM05D002313 ORTHO05D004520 5.0e-15 86.3 109 52.3
Hund00818 Selenicereus undatus HOM05D004117 ORTHO05D004520 1.9e-14 84.3 55 65.5
Solyc12g010950.2 Solanum lycopersicum HOM05D000403 ORTHO05D000350 3.3e-14 83.6 98 50.0
QL08p042899 Quercus lobata HOM05D004117 ORTHO05D004520 5.6e-14 82.8 103 56.3
PGSC0003DMG400007803 Solanum tuberosum HOM05D000403 ORTHO05D000350 5.6e-14 82.8 96 51.0
TAR030G0002 Trochodendron aralioides HOM05D004117 ORTHO05D004520 7.3e-14 82.4 105 54.3
Solyc12g010960.2 Solanum lycopersicum HOM05D000403 ORTHO05D000350 9.8e-11 72.0 98 42.9
Sopen12g006320 Solanum pennellii HOM05D000403 ORTHO05D011787 4.9e-10 69.7 35 94.3
MBI06_g18691_MAGBIO Magnolia biondii HOM05D004117 ORTHO05D004520 1.9e-09 67.8 292 31.2
Sopen01g031810 Solanum pennellii HOM05D000403 ORTHO05D000350 1.2e-08 65.1 98 40.8
Sopen12g006330 Solanum pennellii HOM05D000403 ORTHO05D000350 6.0e-08 62.8 33 87.9
CAN.G698.10 Capsicum annuum HOM05D000403 ORTHO05D000350 7.8e-08 62.4 100 42.0
CAN.G1743.5 Capsicum annuum HOM05D000403 ORTHO05D000350 1.3e-07 61.6 100 42.0
Nitab4.5_0003133g0050 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.3e-07 60.8 34 94.1
Nitab4.5_0003215g0010 Nicotiana tabacum HOM05D000403 ORTHO05D000350 2.3e-07 60.8 100 42.0
PGSC0003DMG400004895 Solanum tuberosum HOM05D000403 ORTHO05D000350 6.6e-07 59.3 101 42.6
QL08p042731 Quercus lobata HOM05D004117 ORTHO05D004520 1.1e-06 58.5 37 81.1
Nitab4.5_0019070g0010 Nicotiana tabacum HOM05D000403 ORTHO05D000350 1.5e-06 58.2 100 41.0
Nn1g09458 Nelumbo nucifera HOM05D000403 ORTHO05D000350 3.3e-06 57.0 54 46.3
QL03p022147 Quercus lobata HOM05D000403 ORTHO05D000350 3.3e-06 57.0 54 46.3
arahy.Tifrunner.gnm1.ann1.N5266S Arachis hypogaea HOM05D004117 ORTHO05D004520 4.3e-06 56.6 36 77.8
Solyc06g063040.1 Solanum lycopersicum HOM05D000403 ORTHO05D000350 5.6e-06 56.2 101 41.6
CAN.G164.29 Capsicum annuum HOM05D000403 ORTHO05D000350 7.3e-06 55.8 100 39.0
Cfa008502 Carpinus fangiana HOM05D000403 ORTHO05D000350 7.3e-06 55.8 67 44.8
vmacro12419 Vaccinium macrocarpon HOM05D004117 ORTHO05D004520 7.3e-06 55.8 73 52.1
Sopen06g022490 Solanum pennellii HOM05D000403 ORTHO05D000350 9.5e-06 55.5 101 40.6


User provided reference genes

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