Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.1e-184 649.8 329 100.0
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 2.0e-181 639.0 329 97.6
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 1.3e-180 636.3 329 97.3
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 6.1e-175 617.5 329 94.8
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 2.3e-174 615.5 329 95.7
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 3.5e-170 601.7 330 93.0
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 6.5e-153 544.3 329 82.1
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 6.5e-153 544.3 330 85.5
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 1.8e-142 509.6 328 77.1
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.0e-142 508.4 324 78.4
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 5.2e-142 508.1 329 76.6
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 6.8e-142 507.7 329 75.1
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 7.5e-141 504.2 323 78.3
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 2.2e-140 502.7 328 74.4
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.2e-140 502.7 329 75.7
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 6.4e-140 501.1 328 74.1
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 3.2e-139 498.8 325 76.9
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 3.2e-139 498.8 329 77.5
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 9.2e-139 497.3 328 74.4
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 1.6e-138 496.5 329 73.6
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 3.5e-138 495.4 330 73.3
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 8.6e-137 490.7 329 72.3
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 2.5e-136 489.2 324 72.5
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 2.5e-136 489.2 331 74.3
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.3e-136 488.4 328 73.8
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 4.3e-136 488.4 329 72.6
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 4.3e-136 488.4 328 72.6
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 5.6e-136 488.0 326 73.9
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 1.6e-135 486.5 325 70.8
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 2.1e-135 486.1 331 73.7
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 3.6e-135 485.3 329 72.3
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 3.6e-135 485.3 329 72.6
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 8.0e-135 484.2 324 72.8
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 8.0e-135 484.2 329 72.6
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 5.2e-134 481.5 326 73.0
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.5e-133 479.9 325 70.2
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 7.5e-133 477.6 325 71.1
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 1.3e-132 476.9 325 70.5
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.3e-132 476.9 325 69.5
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 2.2e-132 476.1 331 71.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.2e-132 476.1 331 71.0
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 2.2e-132 476.1 326 72.1
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.9e-132 474.9 325 69.5
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.4e-131 473.4 326 72.1
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 1.9e-131 473.0 331 71.0
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 3.2e-131 472.2 331 70.4
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 3.2e-131 472.2 328 70.1
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 7.0e-131 471.1 325 70.2
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 6.0e-130 468.0 330 69.1
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.0e-129 467.2 329 70.5
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 1.3e-129 466.8 329 70.2
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 5.0e-129 464.9 336 69.0
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 5.0e-129 464.9 331 71.0
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 5.0e-129 464.9 331 69.2
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 6.6e-129 464.5 326 69.9
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 8.6e-129 464.2 326 72.1
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.5e-128 463.4 322 70.2
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 1.9e-128 463.0 327 69.1
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 2.5e-128 462.6 323 68.4
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 3.3e-128 462.2 324 69.1
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 4.3e-128 461.8 326 69.3
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 4.3e-128 461.8 326 69.0
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 5.6e-128 461.5 322 69.9
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 5.6e-128 461.5 329 69.0
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 1.2e-127 460.3 322 68.6
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 1.1e-126 457.2 325 69.5
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 3.1e-126 455.7 326 69.3
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 4.0e-126 455.3 329 69.0
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 4.0e-126 455.3 324 67.0
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.5e-125 453.4 329 67.5
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 2.6e-125 452.6 373 62.7
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 3.4e-125 452.2 326 68.7
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 4.4e-125 451.8 323 69.0
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 1.7e-124 449.9 329 67.8
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 2.9e-124 449.1 323 68.1
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 9.2e-123 444.1 324 67.0
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.2e-122 443.7 326 67.5
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.5e-122 442.2 325 65.5
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 7.8e-122 441.0 327 67.9
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 8.6e-121 437.6 325 64.3
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.4e-118 430.3 326 64.7
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 3.1e-118 429.1 326 64.7
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 3.1e-118 429.1 328 64.9
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 4.0e-118 428.7 326 64.4
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 5.2e-118 428.3 320 66.6
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 8.9e-118 427.6 309 68.6
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 8.9e-118 427.6 329 65.3
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 1.5e-117 426.8 326 64.7
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 2.6e-117 426.0 326 66.0
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 4.4e-117 425.2 311 67.2
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 7.6e-117 424.5 324 64.5
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 1.7e-116 423.3 324 63.9
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 4.9e-116 421.8 326 63.5
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.4e-115 420.2 326 63.5
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.9e-115 419.9 326 63.5
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 9.2e-115 417.5 326 63.5
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 2.1e-114 416.4 419 56.6
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 3.5e-114 415.6 325 64.3
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 8.7e-113 411.0 378 58.5
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.5e-112 409.5 307 63.5
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 5.6e-112 408.3 281 73.0
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 7.3e-112 407.9 296 67.2
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 8.1e-111 404.4 325 61.8
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 2.4e-110 402.9 325 61.2
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 2.4e-110 402.9 324 62.3
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 1.5e-109 400.2 325 61.5
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 9.9e-109 397.5 326 60.7
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.7e-108 396.7 547 43.5
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 9.3e-107 391.0 292 64.7
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.7e-105 386.7 268 71.6
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 2.3e-105 386.3 256 74.2
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.3e-103 380.6 326 60.7
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 2.1e-103 379.8 324 58.3
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.4e-102 377.1 326 59.2
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 1.2e-101 374.0 325 58.8
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.6e-98 362.1 325 57.2
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 2.1e-95 353.2 328 56.4
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 2.6e-93 346.3 687 34.5
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 3.2e-91 339.3 291 60.1
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 5.6e-88 328.6 271 62.0
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 4.8e-87 325.5 267 61.8
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 4.8e-87 325.5 230 67.0
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 3.1e-86 322.8 224 72.3
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 3.8e-84 315.8 312 50.6
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.9e-83 313.5 258 61.2
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 2.5e-83 313.2 310 47.7
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 5.5e-83 312.0 310 48.1
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.1e-78 297.7 202 70.8
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 5.0e-76 288.9 310 48.4
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.1e-70 271.2 179 76.5
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 3.1e-70 269.6 223 60.1
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.3e-55 221.1 303 39.3
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 4.4e-40 169.5 193 43.5
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 1.6e-34 151.0 96 77.1
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 2.3e-33 147.1 115 64.3
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 7.0e-30 135.6 86 74.4
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 2.0e-29 134.0 119 58.8
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 3.5e-29 133.3 115 60.9
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 1.3e-28 131.3 88 78.4
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 2.9e-28 130.2 75 77.3
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.0e-25 121.7 97 61.9
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 3.1e-25 120.2 97 61.9
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 6.6e-20 102.4 330 26.7
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 7.5e-16 89.0 85 51.8
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 1.6e-13 81.3 69 58.0
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 2.8e-10 70.5 54 66.7
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 2.8e-10 70.5 54 66.7
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 3.6e-10 70.1 54 66.7
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 8.1e-10 68.9 69 53.6
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 8.9e-09 65.5 56 55.4
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.2e-08 65.1 43 69.8
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 8.3e-07 58.9 70 45.7


User provided reference genes

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