Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007499 Solanum tuberosum HOM05D006507 ORTHO05D007296 0.0e+00 2395.9 1224 100.0
Sopen06g031820 Solanum pennellii HOM05D006507 ORTHO05D007296 0.0e+00 1897.9 1215 82.5
Solyc06g075420.1 Solanum lycopersicum HOM05D006507 ORTHO05D007296 0.0e+00 1699.1 1023 86.3
Nitab4.5_0000270g0010 Nicotiana tabacum HOM05D006507 ORTHO05D007296 0.0e+00 1605.5 1307 68.2
Nitab4.5_0001698g0050 Nicotiana tabacum HOM05D006507 ORTHO05D007296 0.0e+00 1533.9 1314 65.8
CAN.G1001.2 Capsicum annuum HOM05D006507 ORTHO05D007296 0.0e+00 1507.7 1058 76.2
Peaxi162Scf00072g00226 Petunia axillaris HOM05D006507 ORTHO05D007296 0.0e+00 1088.2 1041 61.4
Sopen02g037950 Solanum pennellii HOM05D000002 ORTHO05D000001 7.6e-247 858.2 844 60.8
Solyc06g075410.4 Solanum lycopersicum HOM05D006507 ORTHO05D007296 4.0e-86 324.3 177 94.9
CAN.G1001.3 Capsicum annuum HOM05D006507 ORTHO05D007296 3.1e-83 314.7 232 73.7
CSS0009997 Camellia sinensis var. sinensis HOM05D006507 ORTHO05D007296 1.4e-59 236.1 1356 24.7
Atru.chr3.3722 Acer truncatum HOM05D006507 ORTHO05D007296 1.6e-55 222.6 1392 25.4
Rhsim13G0091300 Rhododendron simsii HOM05D006507 ORTHO05D007296 4.7e-55 221.1 1334 26.2
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 2.3e-54 218.8 1379 25.6
Atru.chr3.3727 Acer truncatum HOM05D006507 ORTHO05D007296 3.2e-51 208.4 1531 24.6
Sopen02g037960 Solanum pennellii HOM05D006507 ORTHO05D007296 7.1e-51 207.2 116 88.8
Oeu022272.1 Olea europaea HOM05D006507 ORTHO05D007296 1.6e-50 206.1 1259 25.5
TWI79G0725 Tripterygium wilfordii HOM05D006507 ORTHO05D007296 2.0e-45 189.1 1395 25.1
MSTRG.12615 Avicennia marina HOM05D006507 ORTHO05D007296 2.6e-45 188.7 1249 24.2
PGR102G3212 Punica granatum HOM05D006507 ORTHO05D007296 1.3e-44 186.4 1350 23.3
Thecc.09G262500 Theobroma cacao HOM05D006507 ORTHO05D007296 3.8e-44 184.9 1468 25.1
Gohir.D07G120101 Gossypium hirsutum HOM05D006507 ORTHO05D007296 1.2e-42 179.9 1403 25.2
Gorai.001G129300 Gossypium raimondii HOM05D006507 ORTHO05D007296 2.3e-41 175.6 1419 24.6
Manes.11G139900 Manihot esculenta HOM05D006507 ORTHO05D007296 5.1e-41 174.5 1539 24.8
DCAR_006032 Daucus carota HOM05D006507 ORTHO05D007296 8.6e-41 173.7 1308 24.3
SalBow3G2105 Salvia bowleyana HOM05D006507 ORTHO05D007296 1.1e-40 173.3 1226 25.9
ClCG02G020740 Citrullus lanatus HOM05D006507 ORTHO05D007296 4.0e-38 164.9 1447 22.9
COL.COLO4_25271 Corchorus olitorius HOM05D006507 ORTHO05D007296 2.0e-37 162.5 1438 23.6
Duzib170G0831 Durio zibethinus HOM05D006507 ORTHO05D007296 9.9e-37 160.2 1417 24.3
MELO3C025723.2 Cucumis melo HOM05D006507 ORTHO05D007296 1.7e-36 159.5 1472 23.4
Sc21g0000130 Simmondsia chinensis HOM05D006507 ORTHO05D007296 7.1e-35 154.1 1419 24.5
Cc01_g11720 Coffea canephora HOM05D006507 ORTHO05D007296 1.2e-34 153.3 1282 23.4
Gohir.A07G115600 Gossypium hirsutum HOM05D006507 ORTHO05D007296 6.0e-34 151.0 1313 23.7
Lj2A1039T65 Lonicera japonica HOM05D006507 ORTHO05D007296 2.3e-33 149.1 923 24.5
Lsat_1_v5_gn_2_25380 Lactuca sativa HOM05D006507 ORTHO05D007296 3.0e-33 148.7 505 32.1
Actinidia24071 Actinidia chinensis HOM05D006507 ORTHO05D007296 3.9e-33 148.3 1257 24.5
FAN11G1966 Fragaria x ananassa HOM05D006507 ORTHO05D007296 3.9e-33 148.3 1422 24.3
Thhalv10012478m.g Eutrema salsugineum HOM05D006507 ORTHO05D007296 2.5e-32 145.6 1252 23.6
CiPaw.13G105600 Carya illinoinensis HOM05D006507 ORTHO05D007296 7.3e-32 144.1 1515 23.1
TAR633G2802 Trochodendron aralioides HOM05D006507 ORTHO05D007296 9.6e-32 143.7 1390 23.5
GSVIVG01025113001 Vitis vinifera HOM05D038408 ORTHO05D007296 1.6e-31 142.9 1232 24.4
FAN16G3496 Fragaria x ananassa HOM05D006507 ORTHO05D007296 2.8e-31 142.1 1417 23.9
vmacro03160 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 2.8e-31 142.1 423 32.9
CANSAT54G2524 Cannabis sativa HOM05D006507 ORTHO05D007296 3.6e-31 141.7 1486 22.7
AL8G36760 Arabidopsis lyrata HOM05D006507 ORTHO05D007296 3.1e-30 138.7 1303 23.4
Potri.005G131500 Populus trichocarpa HOM05D006507 ORTHO05D007296 9.0e-30 137.1 1378 23.7
Migut.N02633 Erythranthe guttata HOM05D006507 ORTHO05D007296 2.9e-28 132.1 116 54.3
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 4.9e-28 131.3 832 26.0
Ca_19235_v3 Cicer arietinum L. HOM05D006507 ORTHO05D007296 8.4e-28 130.6 1350 23.0
Dinv32808 Davidia involucrata HOM05D006507 ORTHO05D007296 1.4e-27 129.8 144 52.1
Peaxi162Scf00072g00227 Petunia axillaris HOM05D006507 ORTHO05D007296 1.4e-27 129.8 95 76.8
HanXRQChr06g0183291 Helianthus annuus HOM05D006507 ORTHO05D007296 4.2e-27 128.3 175 42.3
CARHR273800 Cardamine hirsuta HOM05D006507 ORTHO05D007296 7.1e-27 127.5 1268 22.2
HanXRQChr06g0183281 Helianthus annuus HOM05D006507 ORTHO05D007296 9.3e-27 127.1 286 33.6
Sp6g21800 Schrenkiella parvula HOM05D006507 ORTHO05D007296 9.3e-27 127.1 1304 23.2
vmacro03159 Vaccinium macrocarpon HOM05D006507 ORTHO05D007296 9.3e-27 127.1 148 45.9
CsaV3_6G021880 Cucumis sativus L. HOM05D006507 ORTHO05D007296 2.7e-26 125.6 1380 22.4
MD03G1109500 Malus domestica HOM05D006507 ORTHO05D007296 3.5e-26 125.2 237 39.2
Prupe.6G092200 Prunus persica HOM05D006507 ORTHO05D007296 4.6e-26 124.8 185 44.9
Cpa.g.sc139.58 Carica papaya HOM05D006507 ORTHO05D007296 1.0e-25 123.6 191 42.9
Ciclev10027733m.g Citrus clementina HOM05D006507 ORTHO05D007296 1.3e-25 123.2 247 37.2
ECA238G2561 Erigeron canadensis HOM05D006507 ORTHO05D007296 1.3e-25 123.2 116 54.3
Sabra05G0106900 Salix brachista HOM05D006507 ORTHO05D007296 1.8e-25 122.9 1385 23.3
arahy.Tifrunner.gnm1.ann1.NP2AMW Arachis hypogaea HOM05D006507 ORTHO05D007296 3.9e-25 121.7 1391 24.1
C09p52640 Brassica napus HOM05D006507 ORTHO05D007296 6.7e-25 120.9 1246 23.1
THA.LOC104810833 Tarenaya hassleriana HOM05D006507 ORTHO05D007296 7.4e-24 117.5 1267 23.7
BraA10t43814Z Brassica rapa HOM05D006507 ORTHO05D007296 9.6e-24 117.1 1234 22.3
Aa31LG1G12330 Aethionema arabicum HOM05D006507 ORTHO05D007296 1.3e-23 116.7 305 34.8
PSO339G6510 Papaver somniferum HOM05D006507 ORTHO05D007296 1.6e-23 116.3 99 57.6
Actinidia08403 Actinidia chinensis HOM05D006507 ORTHO05D007296 2.8e-23 115.5 68 77.9
BolC9t58131H Brassica oleracea HOM05D006507 ORTHO05D007296 3.7e-23 115.2 1247 23.1
SGA_v2.0_scaffold80G25739 Striga asiatica HOM05D006507 ORTHO05D007296 6.2e-23 114.4 63 77.8
arahy.Tifrunner.gnm1.ann1.M2HQ4Q Arachis hypogaea HOM05D006507 ORTHO05D007296 8.1e-23 114.0 1398 24.6
Cpa.g.sc139.57 Carica papaya HOM05D006507 ORTHO05D007296 8.1e-23 114.0 73 72.6
PSO384G3963 Papaver somniferum HOM05D006507 ORTHO05D007296 8.1e-23 114.0 92 60.9
Aqoxy2G01879 Aquilegia oxysepala HOM05D006507 ORTHO05D007296 1.1e-22 113.6 122 52.5
A10p17300 Brassica napus HOM05D006507 ORTHO05D007296 1.4e-22 113.2 1278 22.4
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 1.4e-22 113.2 519 28.5
Glyma.11G150661 Glycine max HOM05D006507 ORTHO05D007296 6.9e-22 110.9 131 45.0
AT5G60150 Arabidopsis thaliana HOM05D006507 ORTHO05D007296 1.5e-21 109.8 1319 22.5
Lj3g0018374 Lotus japonicus HOM05D006507 ORTHO05D007296 1.5e-21 109.8 475 32.0
VMungo1127G1622 Vigna mungo HOM05D006507 ORTHO05D007296 1.5e-21 109.8 154 43.5
Sed0026220 Sechium edule HOM05D006507 ORTHO05D007296 2.6e-21 109.0 1342 23.6
Carub.0008s2088 Capsella rubella HOM05D006507 ORTHO05D007296 3.4e-21 108.6 1245 23.8
Actinidia07103 Actinidia chinensis HOM05D006507 ORTHO05D007296 2.2e-20 105.9 367 28.9
Glyma.12G072900 Glycine max HOM05D006507 ORTHO05D007296 4.9e-20 104.8 128 46.1
Hma1.2p1_2156F.1_g315450 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 6.4e-20 104.4 96 59.4
RcHm_v2.0_Chr5g0061351 Rosa chinensis HOM05D006507 ORTHO05D007296 1.4e-19 103.2 187 43.9
RcHm_v2.0_Chr5g0061361 Rosa chinensis HOM05D006507 ORTHO05D007296 1.4e-19 103.2 1074 24.7
Lalb_Chr19g0137501 Lupinus albus HOM05D006507 ORTHO05D007296 1.9e-19 102.8 72 66.7
Migut.N02632 Erythranthe guttata HOM05D006507 ORTHO05D007296 3.2e-19 102.1 128 46.9
Medtr4g061110 Medicago truncatula HOM05D006507 ORTHO05D007296 4.2e-19 101.7 66 71.2
Nn2g12985 Nelumbo nucifera HOM05D006507 ORTHO05D007296 9.3e-19 100.5 185 38.9
Os12g0102700 Oryza sativa ssp. japonica HOM05D006507 ORTHO05D007296 9.3e-19 100.5 214 34.6
TPR.G2995 Trifolium pratense HOM05D006507 ORTHO05D007296 7.9e-18 97.4 124 43.5
Psat7g223080 Pisum sativum HOM05D006507 ORTHO05D007296 6.7e-17 94.4 68 66.2
AUR62025040 Chenopodium quinoa HOM05D006507 ORTHO05D007296 2.5e-16 92.4 126 40.5
HPP92_026984 Vanilla planifolia HOM05D006507 ORTHO05D007296 4.3e-16 91.7 93 48.4
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 7.4e-16 90.9 137 38.0
HPP92_015411 Vanilla planifolia HOM05D006507 ORTHO05D007296 7.4e-16 90.9 93 48.4
AUR62006495 Chenopodium quinoa HOM05D006507 ORTHO05D007296 9.6e-16 90.5 69 60.9
FAN21G2403 Fragaria x ananassa HOM05D006507 ORTHO05D007296 2.1e-15 89.4 171 42.1
Lalb_Chr19g0137491 Lupinus albus HOM05D006507 ORTHO05D007296 3.7e-15 88.6 187 38.5
Hma1.2p1_0840F.1_g226520 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 8.2e-15 87.4 54 75.9
CDE04G2211 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 1.8e-14 86.3 189 34.9
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 1.5e-13 83.2 132 42.4
EL10Ac9g22402 Beta vulgaris HOM05D006507 ORTHO05D007296 2.0e-13 82.8 211 29.4
AagrBONN_evm.TU.Sc2ySwM_368.2680 Anthoceros agrestis HOM05D006507 ORTHO05D007296 1.0e-12 80.5 57 63.2
MD03G1109700 Malus domestica HOM05D006507 ORTHO05D007296 1.3e-12 80.1 126 42.9
CDE12G0493 Ceratophyllum demersum HOM05D034970 ORTHO05D007296 3.8e-12 78.6 182 35.2
Pp3c16_7200 Physcomitrium patens HOM05D034648 ORTHO05D007296 6.5e-12 77.8 87 44.8
FvH4_3g33790 Fragaria vesca HOM05D006507 ORTHO05D007296 2.5e-11 75.9 1351 22.0
ATR1159G075 Amborella trichopoda HOM05D006507 ORTHO05D007296 1.6e-10 73.2 415 25.8
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 7.9e-10 70.9 252 28.6
CANSAT54G0008 Cannabis sativa HOM05D006507 ORTHO05D007296 1.8e-09 69.7 506 24.7
Hma1.2p1_0660F.1_g197490 Hydrangea macrophylla HOM05D006507 ORTHO05D007296 1.8e-09 69.7 70 50.0
Mapoly0001s0188 Marchantia polymorpha HOM05D006507 ORTHO05D007296 1.9e-08 66.2 58 55.2
Psat7g223120 Pisum sativum HOM05D006507 ORTHO05D007296 5.7e-08 64.7 244 29.1
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 5.7e-08 64.7 174 33.9
CBR_g19214 Chara braunii HOM05D006507 ORTHO05D007296 9.7e-08 63.9 73 47.9
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 2.8e-07 62.4 257 28.0
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 6.3e-07 61.2 170 33.5
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 1.4e-06 60.1 84 42.9
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 1.4e-06 60.1 110 35.5
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 1.8e-06 59.7 102 38.2
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 3.1e-06 58.9 224 29.5
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 4.1e-06 58.5 147 32.0
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 5.3e-06 58.2 106 37.7
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 6.9e-06 57.8 413 24.2
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 6.9e-06 57.8 97 39.2
FvH4_7g20180 Fragaria vesca HOM05D003265 ORTHO05D003819 9.0e-06 57.4 118 37.3
Zm00001eb246740 Zea mays HOM05D006507 ORTHO05D007296 9.0e-06 57.4 355 27.6


User provided reference genes

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