Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 5.7e-95 350.9 177 100.0
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 3.1e-93 345.1 176 98.3
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 3.1e-93 345.1 176 98.3
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.4e-87 324.7 177 91.5
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 2.8e-86 322.0 169 95.3
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 2.8e-86 322.0 177 93.2
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 3.5e-84 315.1 169 92.3
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.1e-82 310.1 169 91.1
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 2.8e-81 305.4 176 86.9
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 8.0e-81 303.9 177 83.6
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 4.0e-80 301.6 177 84.7
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.2e-79 300.1 177 84.7
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.5e-79 299.7 180 83.9
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 2.0e-79 299.3 177 85.3
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 3.4e-79 298.5 177 84.7
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 5.7e-79 297.7 175 84.6
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 5.7e-79 297.7 175 84.6
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 2.2e-78 295.8 177 82.5
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 2.8e-78 295.4 177 83.6
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 3.7e-78 295.0 163 89.6
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.9e-78 294.7 177 84.2
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 4.9e-78 294.7 178 82.0
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 6.3e-78 294.3 177 82.5
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.4e-77 293.1 176 84.7
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.2e-77 292.0 177 83.1
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 4.1e-77 291.6 181 80.1
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.4e-77 291.2 177 83.1
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 5.4e-77 291.2 177 83.1
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 7.0e-77 290.8 177 81.9
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 9.2e-77 290.4 200 76.0
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 1.6e-76 289.7 180 81.1
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 1.6e-76 289.7 180 81.1
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 2.0e-76 289.3 180 79.4
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 3.5e-76 288.5 182 78.0
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 3.5e-76 288.5 169 85.8
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 5.9e-76 287.7 163 89.0
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 5.9e-76 287.7 180 79.4
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 5.9e-76 287.7 177 80.8
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 1.3e-75 286.6 179 81.0
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.3e-75 286.6 178 80.9
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 1.3e-75 286.6 179 79.9
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 1.7e-75 286.2 180 80.0
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.3e-75 285.8 177 80.2
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 2.3e-75 285.8 176 81.2
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 3.9e-75 285.0 180 80.0
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 3.9e-75 285.0 180 81.7
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 3.9e-75 285.0 169 83.4
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 5.0e-75 284.6 180 78.3
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 5.0e-75 284.6 177 80.2
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 6.6e-75 284.3 179 79.9
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 6.6e-75 284.3 179 79.9
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 8.6e-75 283.9 184 77.7
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.1e-74 283.5 176 79.0
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 2.5e-74 282.3 179 80.4
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 4.3e-74 281.6 176 79.0
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 5.6e-74 281.2 159 86.2
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 7.3e-74 280.8 161 84.5
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 9.5e-74 280.4 180 79.4
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 2.1e-73 279.3 155 89.0
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 2.8e-73 278.9 185 77.3
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 8.0e-73 277.3 174 82.2
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 8.0e-73 277.3 161 83.9
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.3e-72 275.8 159 84.9
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.3e-72 275.8 159 84.9
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 2.3e-72 275.8 160 85.0
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 4.0e-72 275.0 174 81.6
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 4.0e-72 275.0 173 78.0
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 5.2e-72 274.6 183 76.5
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 1.5e-71 273.1 161 81.4
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 2.0e-71 272.7 180 77.8
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 2.6e-71 272.3 165 81.2
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 4.4e-71 271.6 158 84.8
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 5.8e-71 271.2 160 83.8
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 5.8e-71 271.2 175 77.1
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 7.5e-71 270.8 189 73.5
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 7.5e-71 270.8 168 82.7
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 7.5e-71 270.8 158 83.5
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 7.5e-71 270.8 174 76.4
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 9.8e-71 270.4 160 83.8
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 1.3e-70 270.0 159 84.9
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 1.7e-70 269.6 179 76.0
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 2.9e-70 268.9 159 83.0
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 2.9e-70 268.9 159 83.0
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 2.9e-70 268.9 176 73.3
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 2.9e-70 268.9 174 76.4
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 3.7e-70 268.5 159 81.1
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 3.7e-70 268.5 168 82.1
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 6.4e-70 267.7 177 72.9
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 8.3e-70 267.3 180 76.1
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 1.4e-69 266.5 159 83.0
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 1.9e-69 266.2 177 72.9
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 3.2e-69 265.4 169 78.1
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 3.2e-69 265.4 162 80.2
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 9.2e-69 263.8 172 75.0
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.6e-68 263.1 167 77.2
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 2.7e-68 262.3 145 89.7
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 7.8e-68 260.8 145 88.3
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 1.0e-67 260.4 171 77.2
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.3e-67 260.0 174 73.6
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.7e-67 259.6 180 71.7
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 8.6e-67 257.3 145 86.2
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 3.3e-66 255.4 143 88.8
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 5.6e-66 254.6 174 72.4
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 1.6e-65 253.1 137 92.0
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.1e-65 252.7 148 85.1
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 3.6e-65 251.9 176 69.3
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 8.0e-65 250.8 184 69.6
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.4e-64 250.0 142 85.2
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 3.1e-64 248.8 168 75.6
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 4.0e-64 248.4 137 91.2
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.2e-63 246.9 139 85.6
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.5e-63 246.5 173 73.4
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 2.9e-62 242.3 158 75.3
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 4.9e-62 241.5 172 70.3
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 3.0e-59 232.3 154 73.4
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.0e-59 232.3 177 70.1
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 7.6e-55 217.6 135 83.0
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.7e-54 216.5 155 72.9
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 2.1e-52 209.5 166 57.2
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 7.8e-52 207.6 162 65.4
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 3.9e-51 205.3 110 92.7
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 4.7e-49 198.4 117 88.0
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 6.2e-49 198.0 176 53.4
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.1e-48 197.2 117 80.3
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 4.0e-48 195.3 109 86.2
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 4.2e-45 185.3 143 66.4
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 3.3e-42 175.6 125 70.4
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 9.6e-42 174.1 113 77.9
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.7e-38 163.3 150 53.3
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 1.7e-38 163.3 137 62.8
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 7.1e-37 157.9 100 78.0
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 4.6e-36 155.2 127 65.4
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 8.7e-35 151.0 77 93.5
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 6.2e-33 144.8 116 68.1
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 1.1e-32 144.1 115 67.0
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 3.4e-31 139.0 185 47.0
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 2.9e-30 136.0 93 74.2
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.8e-30 135.6 77 83.1
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.4e-29 133.7 68 92.6
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.4e-29 133.7 77 85.7
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.2e-29 132.5 154 50.0
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 3.5e-28 129.0 82 78.0
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 9.6e-26 120.9 120 60.0
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 1.4e-24 117.1 65 89.2
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.6e-20 102.1 77 68.8
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 3.9e-19 99.0 66 74.2
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 5.7e-18 95.1 52 86.5
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 2.4e-16 89.7 58 77.6
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 3.1e-16 89.4 58 72.4


User provided reference genes

Program Settings