Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 6.1e-53 211.1 154 100.0
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 2.0e-35 152.9 102 80.4
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 4.6e-24 115.2 65 83.1
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 9.3e-17 90.9 96 53.1
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 1.2e-16 90.5 85 57.6
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 2.1e-16 89.7 72 59.7
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 2.7e-16 89.4 155 40.6
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 3.5e-16 89.0 85 56.5
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 3.5e-16 89.0 97 52.6
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 4.6e-16 88.6 71 63.4
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 6.0e-16 88.2 100 51.0
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 7.9e-16 87.8 66 66.7
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 7.9e-16 87.8 95 52.6
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.0e-15 87.4 97 50.5
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.3e-15 87.0 60 68.3
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.3e-15 87.0 76 56.6
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.3e-15 87.0 98 50.0
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 1.3e-15 87.0 66 66.7
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.7e-15 86.7 100 49.0
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 3.0e-15 85.9 66 65.2
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 3.0e-15 85.9 103 41.7
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 3.9e-15 85.5 72 54.2
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.9e-15 85.5 66 65.2
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 3.9e-15 85.5 66 65.2
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 3.9e-15 85.5 100 49.0
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 5.1e-15 85.1 105 51.4
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 8.7e-15 84.3 97 50.5
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.1e-14 84.0 98 52.0
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.1e-14 84.0 97 50.5
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 1.5e-14 83.6 92 48.9
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 1.5e-14 83.6 75 53.3
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 1.9e-14 83.2 101 48.5
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 1.9e-14 83.2 153 39.9
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.9e-14 83.2 65 63.1
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.5e-14 82.8 91 51.6
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 4.3e-14 82.0 87 47.1
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 4.3e-14 82.0 98 48.0
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 5.6e-14 81.6 66 54.5
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 7.3e-14 81.3 103 50.5
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 9.6e-14 80.9 97 49.5
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 1.3e-13 80.5 66 63.6
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 1.6e-13 80.1 101 48.5
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.6e-13 80.1 102 50.0
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.6e-13 80.1 96 47.9
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.6e-13 80.1 67 56.7
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 1.6e-13 80.1 96 47.9
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 2.1e-13 79.7 77 51.9
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 2.1e-13 79.7 95 48.4
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 2.1e-13 79.7 66 62.1
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.8e-13 79.3 92 51.1
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.8e-13 79.3 76 53.9
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.8e-13 79.3 68 54.4
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 2.8e-13 79.3 71 56.3
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 2.8e-13 79.3 66 62.1
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 3.6e-13 79.0 59 61.0
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 3.6e-13 79.0 151 37.7
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 3.6e-13 79.0 79 51.9
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 4.8e-13 78.6 63 54.0
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 4.8e-13 78.6 90 45.6
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 6.2e-13 78.2 88 46.6
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 8.1e-13 77.8 106 46.2
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 8.1e-13 77.8 102 50.0
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 8.1e-13 77.8 96 46.9
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 8.1e-13 77.8 71 56.3
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 8.1e-13 77.8 73 52.1
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 8.1e-13 77.8 101 45.5
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.1e-12 77.4 96 46.9
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.4e-12 77.0 90 51.1
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.8e-12 76.6 67 49.3
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.4e-12 76.3 73 56.2
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.4e-12 76.3 96 46.9
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 3.1e-12 75.9 89 48.3
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 4.0e-12 75.5 58 60.3
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 5.3e-12 75.1 71 54.9
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 5.3e-12 75.1 103 46.6
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 6.9e-12 74.7 62 53.2
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 9.0e-12 74.3 81 50.6
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 9.0e-12 74.3 63 55.6
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.2e-11 73.9 84 47.6
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.2e-11 73.9 74 50.0
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 1.2e-11 73.9 81 45.7
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.2e-11 73.9 101 42.6
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 1.5e-11 73.6 74 50.0
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.5e-11 73.6 74 50.0
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 1.5e-11 73.6 66 56.1
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 1.5e-11 73.6 94 42.6
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.0e-11 73.2 74 50.0
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 2.6e-11 72.8 95 46.3
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.6e-11 72.8 100 42.0
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 2.6e-11 72.8 99 42.4
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 3.4e-11 72.4 68 50.0
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 3.4e-11 72.4 102 41.2
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 3.4e-11 72.4 89 46.1
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 3.4e-11 72.4 99 40.4
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 5.8e-11 71.6 88 47.7
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 7.6e-11 71.2 93 41.9
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 9.9e-11 70.9 59 54.2
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.3e-10 70.5 63 49.2
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.7e-10 70.1 70 51.4
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.7e-10 70.1 72 50.0
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.7e-10 70.1 98 42.9
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 1.7e-10 70.1 90 44.4
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 2.2e-10 69.7 107 38.3
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.2e-10 69.7 93 45.2
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 4.9e-10 68.6 95 41.1
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 4.9e-10 68.6 99 42.4
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 6.4e-10 68.2 101 44.6
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 6.4e-10 68.2 105 42.9
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 6.4e-10 68.2 89 46.1
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 8.4e-10 67.8 66 53.0
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 1.4e-09 67.0 92 40.2
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 3.2e-09 65.9 98 39.8
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 4.2e-09 65.5 97 41.2
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 4.2e-09 65.5 92 40.2
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 4.2e-09 65.5 91 45.1
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 5.5e-09 65.1 95 43.2
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 5.5e-09 65.1 95 43.2
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 5.5e-09 65.1 95 43.2
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 5.5e-09 65.1 61 52.5
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 5.5e-09 65.1 78 42.3
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 7.1e-09 64.7 68 48.5
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 7.1e-09 64.7 56 55.4
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 1.2e-08 63.9 60 50.0
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 1.2e-08 63.9 97 40.2
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 1.2e-08 63.9 97 40.2
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.6e-08 63.5 61 49.2
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 1.6e-08 63.5 64 45.3
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.6e-08 63.5 95 41.1
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 2.1e-08 63.2 74 44.6
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 2.1e-08 63.2 59 49.2
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.7e-08 62.8 63 46.0
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 2.7e-08 62.8 61 47.5
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 3.5e-08 62.4 94 41.5
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 3.5e-08 62.4 60 48.3
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.5e-08 62.4 60 51.7
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 4.6e-08 62.0 55 50.9
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 4.6e-08 62.0 56 51.8
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 4.6e-08 62.0 95 41.1
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 4.6e-08 62.0 59 50.8
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 4.6e-08 62.0 63 49.2
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 6.0e-08 61.6 61 50.8
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 6.0e-08 61.6 61 47.5
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 6.0e-08 61.6 59 47.5
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 6.0e-08 61.6 59 47.5
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 6.0e-08 61.6 59 47.5
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 6.0e-08 61.6 59 47.5
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 6.0e-08 61.6 97 40.2
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 6.0e-08 61.6 97 40.2
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 6.0e-08 61.6 84 46.4
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 7.9e-08 61.2 73 52.1
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 1.0e-07 60.8 94 41.5
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 1.0e-07 60.8 94 41.5
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 1.0e-07 60.8 94 41.5
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.0e-07 60.8 57 49.1
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.0e-07 60.8 56 50.0
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.0e-07 60.8 59 52.5
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 1.0e-07 60.8 92 38.0
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 1.8e-07 60.1 99 38.4
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.3e-07 59.7 67 52.2
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 2.3e-07 59.7 59 47.5
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 2.3e-07 59.7 65 46.2
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 3.9e-07 58.9 100 39.0
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 3.9e-07 58.9 102 41.2
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 5.1e-07 58.5 54 50.0
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 6.7e-07 58.2 54 50.0
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 8.7e-07 57.8 100 39.0
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 1.5e-06 57.0 99 40.4
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 1.5e-06 57.0 75 44.0
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 1.9e-06 56.6 58 46.6
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 2.5e-06 56.2 98 39.8
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 2.5e-06 56.2 57 47.4
SEGI_13071 Sequoiadendron giganteum HOM05D002383 ORTHO05D002515 4.3e-06 55.5 92 44.6
SEGI_11683 Sequoiadendron giganteum HOM05D011262 ORTHO05D012767 5.6e-06 55.1 68 45.6
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 7.4e-06 54.7 89 39.3
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 9.6e-06 54.3 103 34.0


User provided reference genes

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