Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 5.2e-274 947.2 515 100.0
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 1.5e-268 929.1 515 97.9
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 1.6e-267 925.6 515 97.5
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 7.9e-262 906.7 517 94.8
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.8e-245 852.4 515 89.7
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 7.6e-241 837.0 516 88.6
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.5e-212 743.0 515 70.9
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.1e-210 736.9 515 69.5
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 3.5e-209 731.9 516 69.2
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 2.1e-206 722.6 515 69.3
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 7.5e-204 714.1 541 66.0
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.0e-201 706.1 517 67.5
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.0e-201 706.1 518 68.1
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 3.8e-200 701.8 517 65.8
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.5e-199 699.9 517 65.6
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 4.7e-198 694.9 523 64.4
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.5e-196 689.9 521 63.7
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 3.4e-196 688.7 541 64.3
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 1.7e-195 686.4 520 65.8
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.8e-195 685.6 519 64.9
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 6.3e-195 684.5 516 65.3
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 3.1e-194 682.2 515 65.2
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 4.5e-193 678.3 521 63.5
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 5.9e-193 677.9 519 64.5
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.7e-192 676.4 518 65.3
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 2.3e-192 676.0 516 63.8
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.9e-192 675.6 520 63.1
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 6.6e-192 674.5 526 64.3
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 1.1e-191 673.7 519 63.4
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.1e-191 673.7 517 64.2
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 1.5e-191 673.3 522 64.8
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 5.6e-191 671.4 520 65.2
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 7.3e-191 671.0 518 63.7
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 5.2e-189 664.8 519 64.2
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 5.2e-189 664.8 520 62.1
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 8.9e-189 664.1 519 64.2
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 1.2e-188 663.7 521 63.5
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.5e-188 663.3 515 63.5
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 2.6e-188 662.5 517 62.1
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 4.4e-188 661.8 521 63.3
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 9.8e-188 660.6 519 63.4
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 9.8e-188 660.6 522 63.0
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.7e-187 659.8 517 62.3
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 2.9e-187 659.1 519 63.2
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 1.9e-186 656.4 521 63.7
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 2.4e-186 656.0 516 64.7
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.7e-185 652.5 517 61.9
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.8e-185 651.0 518 61.6
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 6.6e-184 647.9 523 62.3
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.6e-184 647.5 518 61.4
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.5e-183 646.0 519 63.4
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 4.3e-183 645.2 515 61.9
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 4.3e-183 645.2 523 61.0
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 5.6e-183 644.8 519 61.5
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 9.5e-183 644.0 519 61.3
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.6e-182 643.3 523 61.8
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 2.8e-182 642.5 520 63.1
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.8e-182 642.5 517 61.1
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 2.3e-181 639.4 523 60.8
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.5e-180 636.7 517 62.7
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 4.4e-180 635.2 519 60.9
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 9.8e-180 634.0 521 61.6
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 2.2e-179 632.9 527 60.0
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.9e-179 632.5 539 59.4
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 2.9e-179 632.5 524 61.3
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 6.4e-179 631.3 584 55.3
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.1e-178 630.6 525 62.5
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 2.4e-178 629.4 517 60.5
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 2.4e-178 629.4 478 64.9
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 4.1e-178 628.6 568 57.0
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.7e-177 625.9 558 59.3
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 3.5e-177 625.5 522 60.9
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.3e-176 623.6 517 60.7
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.7e-176 623.2 475 64.2
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 3.9e-176 622.1 522 60.7
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 9.5e-175 617.5 556 58.5
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.8e-174 615.9 539 60.1
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.8e-173 613.2 519 60.9
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 3.4e-172 609.0 526 60.3
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 3.7e-171 605.5 522 59.0
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 3.2e-170 602.4 523 58.5
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 3.5e-169 599.0 517 56.5
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 3.5e-169 599.0 521 58.5
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 4.6e-169 598.6 521 58.5
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 4.6e-169 598.6 527 58.3
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 6.0e-169 598.2 520 58.7
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 7.8e-169 597.8 428 68.2
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 2.5e-167 592.8 517 58.2
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.3e-167 592.0 524 57.4
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.4e-165 587.0 518 57.3
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 1.8e-165 586.6 478 61.3
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 3.1e-165 585.9 527 57.7
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 5.2e-165 585.1 519 56.8
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.5e-164 583.6 517 57.1
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.4e-164 582.4 476 60.3
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 5.8e-164 581.6 518 56.8
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 5.8e-164 581.6 518 56.8
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 1.9e-162 576.6 515 56.7
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.2e-161 573.9 515 55.7
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 3.5e-161 572.4 515 55.5
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.0e-160 570.9 430 66.3
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 3.0e-160 569.3 515 55.7
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 3.0e-160 569.3 515 55.7
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 3.9e-160 568.9 428 66.1
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 5.1e-160 568.5 516 56.0
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 3.3e-159 565.8 515 55.7
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 4.3e-159 565.5 519 55.9
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 7.3e-159 564.7 516 55.6
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.6e-158 563.5 517 55.3
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 2.1e-158 563.1 518 55.6
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 1.8e-157 560.1 524 55.5
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 3.1e-157 559.3 520 55.4
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 9.0e-157 557.8 528 54.5
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 3.8e-155 552.4 287 92.0
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 2.4e-154 549.7 432 65.0
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.0e-152 544.3 432 63.4
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 4.0e-149 532.3 386 68.1
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.6e-148 529.6 535 50.5
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 2.1e-145 520.0 529 54.4
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 1.3e-144 517.3 477 56.8
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 7.4e-143 511.5 478 55.9
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.0e-140 503.4 431 60.3
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 9.9e-140 501.1 479 54.7
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 2.9e-139 499.6 290 77.9
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.2e-138 495.7 498 51.8
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 7.9e-137 491.5 551 47.5
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 8.7e-136 488.0 395 62.3
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 2.1e-134 483.4 518 51.2
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 6.2e-134 481.9 380 62.1
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 6.9e-133 478.4 282 77.0
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 2.5e-130 469.9 505 49.7
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.3e-127 459.1 307 67.4
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.0e-119 433.7 290 67.2
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.8e-112 410.6 287 67.2
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.5e-108 397.5 387 53.0
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 3.8e-107 392.9 553 42.0
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 9.1e-101 371.7 290 61.0
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 3.8e-99 366.3 300 57.3
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 6.8e-96 355.5 337 53.7
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 3.4e-95 353.2 381 45.1
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 8.5e-91 338.6 338 55.6
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 7.2e-90 335.5 553 36.9
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 4.0e-80 303.1 420 43.8
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 2.9e-62 243.8 205 57.6
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.7e-59 234.6 183 62.8
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.3e-50 203.4 179 55.9
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 2.8e-49 200.7 230 48.3
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.7e-38 164.9 94 77.7
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.2e-38 164.5 95 76.8
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.2e-37 160.6 92 77.2
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 1.7e-35 154.8 144 53.5
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 1.7e-35 154.8 144 53.5
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 1.9e-34 151.4 280 38.2
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.8e-33 146.7 144 45.8
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.8e-33 146.7 198 43.9
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.4e-32 145.2 230 42.2
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 4.9e-30 136.7 166 48.8
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 2.4e-29 134.4 87 69.0
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 2.4e-29 134.4 87 69.0
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.1e-26 125.6 182 42.3
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 8.1e-25 119.4 151 45.0
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 5.5e-21 106.7 179 38.5
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 6.0e-20 103.2 227 33.5
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 1.4e-16 92.0 195 32.3
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.1e-13 82.4 45 80.0
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 1.4e-08 65.5 60 53.3


User provided reference genes

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