Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 4.2e-62 241.1 117 100.0
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 3.0e-60 235.0 117 97.4
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 5.2e-60 234.2 117 95.7
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 5.2e-60 234.2 117 95.7
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 5.2e-60 234.2 117 95.7
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.3e-58 229.6 117 94.0
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 1.3e-58 229.6 117 94.0
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 2.0e-56 222.2 116 88.8
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 4.2e-54 214.5 116 87.1
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 4.2e-54 214.5 117 85.5
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 4.2e-54 214.5 116 85.3
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.2e-53 213.0 113 87.6
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 2.7e-53 211.8 116 83.6
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 3.6e-53 211.5 115 86.1
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 4.7e-53 211.1 114 83.3
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 6.1e-53 210.7 117 82.1
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 6.1e-53 210.7 115 84.3
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 6.1e-53 210.7 117 81.2
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 8.0e-53 210.3 116 84.5
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.4e-52 209.5 115 85.2
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 1.4e-52 209.5 114 83.3
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 2.3e-52 208.8 115 85.2
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 2.3e-52 208.8 117 83.8
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 3.0e-52 208.4 114 82.5
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 3.0e-52 208.4 114 82.5
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 6.7e-52 207.2 116 82.8
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 6.7e-52 207.2 116 82.8
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 6.7e-52 207.2 115 82.6
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 6.7e-52 207.2 115 84.3
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 1.5e-51 206.1 116 81.9
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 1.5e-51 206.1 116 81.9
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.0e-51 205.7 115 82.6
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 2.0e-51 205.7 114 84.2
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 2.0e-51 205.7 116 83.6
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 2.6e-51 205.3 115 82.6
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 4.4e-51 204.5 117 81.2
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 4.4e-51 204.5 117 81.2
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 4.4e-51 204.5 117 81.2
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 5.7e-51 204.1 116 81.9
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 9.7e-51 203.4 114 80.7
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 9.7e-51 203.4 116 81.0
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 9.7e-51 203.4 116 81.0
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 9.7e-51 203.4 116 81.0
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 1.3e-50 203.0 115 80.9
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.7e-50 202.6 117 78.6
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 2.2e-50 202.2 116 80.2
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 2.2e-50 202.2 117 81.2
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 2.8e-50 201.8 116 81.9
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 3.7e-50 201.4 117 78.6
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.7e-50 201.4 117 80.3
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 4.8e-50 201.1 116 80.2
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 4.8e-50 201.1 116 81.9
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 4.8e-50 201.1 116 79.3
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 4.8e-50 201.1 115 80.0
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 6.3e-50 200.7 116 79.3
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 6.3e-50 200.7 114 80.7
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 8.2e-50 200.3 116 80.2
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 8.2e-50 200.3 118 81.4
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.1e-49 199.9 116 80.2
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 1.4e-49 199.5 114 85.1
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.4e-49 199.5 118 78.8
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.8e-49 199.1 117 79.5
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.8e-49 199.1 117 79.5
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.8e-49 199.1 117 79.5
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.8e-49 199.1 117 79.5
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.8e-49 199.1 117 79.5
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.1e-49 198.4 116 79.3
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.1e-49 198.4 115 79.1
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 3.1e-49 198.4 121 78.5
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 3.1e-49 198.4 112 81.2
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.1e-49 198.0 115 80.0
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 4.1e-49 198.0 117 79.5
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.6e-48 196.1 114 82.5
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 2.0e-48 195.7 116 79.3
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 2.0e-48 195.7 127 74.0
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 2.7e-48 195.3 116 79.3
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 3.5e-48 194.9 116 77.6
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 3.5e-48 194.9 116 77.6
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 4.5e-48 194.5 114 82.5
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 4.5e-48 194.5 116 77.6
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 4.5e-48 194.5 119 79.0
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 4.5e-48 194.5 119 79.0
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 4.5e-48 194.5 116 78.4
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 7.7e-48 193.7 116 78.4
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 7.7e-48 193.7 116 78.4
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 7.7e-48 193.7 116 78.4
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 7.7e-48 193.7 116 78.4
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.0e-47 193.4 102 91.2
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 1.7e-47 192.6 116 78.4
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 2.2e-47 192.2 116 77.6
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 2.2e-47 192.2 116 77.6
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 2.9e-47 191.8 116 77.6
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 2.9e-47 191.8 116 77.6
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 2.9e-47 191.8 116 77.6
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 3.8e-47 191.4 113 79.6
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 5.0e-47 191.0 113 79.6
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 6.5e-47 190.7 116 76.7
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 6.5e-47 190.7 116 76.7
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 6.5e-47 190.7 116 76.7
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 6.5e-47 190.7 114 77.2
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 8.5e-47 190.3 114 78.9
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 77.3
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 3.2e-46 188.3 115 76.5
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 5.5e-46 187.6 116 75.0
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.2e-45 186.4 116 74.1
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.1e-45 185.7 115 73.9
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 2.1e-45 185.7 115 73.9
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 2.7e-45 185.3 117 76.1
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 3.6e-45 184.9 115 72.2
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 3.6e-45 184.9 167 56.9
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.0e-44 183.3 126 69.8
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 1.4e-44 183.0 117 68.4
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 2.3e-44 182.2 116 73.3
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.0e-44 181.8 121 77.7
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.0e-43 179.1 115 70.4
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 7.5e-43 177.2 117 71.8
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.3e-42 176.4 117 74.4
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 8.3e-42 173.7 116 70.7
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 1.8e-41 172.6 132 65.9
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 3.1e-41 171.8 115 70.4
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 9.1e-41 170.2 98 82.7
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 9.1e-41 170.2 98 82.7
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 2.0e-40 169.1 100 81.0
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 5.9e-40 167.5 97 81.4
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.0e-39 164.5 97 78.4
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 4.2e-38 161.4 96 77.1
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.2e-37 159.8 119 68.9
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 8.0e-37 157.1 101 72.3
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 8.9e-36 153.7 111 60.4
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 2.6e-35 152.1 114 61.4
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 3.4e-35 151.8 116 58.6
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 5.7e-35 151.0 97 76.3
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 4.9e-34 147.9 98 71.4
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 4.5e-32 141.4 95 72.6
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 5.0e-31 137.9 115 53.0
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 4.7e-29 131.3 95 68.4
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 1.1e-25 120.2 116 54.3
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 3.5e-24 115.2 78 67.9
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.6e-24 114.8 65 81.5
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 3.9e-23 111.7 64 79.7
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 5.0e-23 111.3 66 81.8
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 1.9e-22 109.4 64 81.2
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 3.3e-22 108.6 66 80.3
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 5.6e-22 107.8 64 76.6
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 7.3e-22 107.5 60 81.7
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 6.2e-21 104.4 58 79.3
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 1.1e-20 103.6 61 78.7
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 1.4e-20 103.2 61 75.4
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 6.8e-20 100.9 52 88.5
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.2e-19 100.1 54 83.3
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.2e-19 100.1 82 59.8
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 1.2e-19 100.1 51 88.2
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 2.6e-19 99.0 87 60.9
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 2.6e-19 99.0 137 41.6
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 4.4e-19 98.2 133 42.9
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 1.3e-18 96.7 50 86.0
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.1e-17 93.6 50 80.0
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 1.9e-14 82.8 72 63.9
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 2.6e-11 72.4 50 74.0
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 4.9e-10 68.2 35 97.1
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 1.1e-06 57.0 100 42.0
Atru.chr9.2072 Acer truncatum HOM05D001461 ORTHO05D005534 5.6e-06 54.7 113 32.7


User provided reference genes

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