Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 8.3e-188 660.2 334 100.0
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 1.9e-176 622.5 334 94.0
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 4.4e-173 611.3 334 93.1
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 1.5e-149 533.1 335 81.2
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 3.2e-147 525.4 337 81.0
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 7.4e-136 487.6 334 74.9
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 2.4e-78 296.6 352 47.2
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 2.3e-65 253.4 324 44.8
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 1.2e-64 251.1 343 43.1
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 9.8e-64 248.1 329 43.2
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 1.7e-63 247.3 358 41.9
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 3.7e-63 246.1 329 42.6
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 5.4e-62 242.3 337 43.6
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 2.7e-61 240.0 357 41.2
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 1.0e-60 238.0 321 43.6
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 3.0e-60 236.5 390 40.5
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 1.9e-59 233.8 334 39.2
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 1.9e-59 233.8 331 43.8
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 7.3e-59 231.9 315 45.1
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 2.3e-57 226.9 325 42.8
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 9.9e-56 221.5 336 40.5
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 1.1e-54 218.0 329 41.3
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 1.4e-54 217.6 336 39.3
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 3.2e-54 216.5 326 40.2
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 7.1e-54 215.3 329 39.8
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 8.6e-52 208.4 252 47.2
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 1.5e-51 207.6 339 40.7
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 2.8e-50 203.4 331 39.0
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.4e-49 201.1 324 38.0
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 1.4e-49 201.1 334 38.0
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 4.0e-49 199.5 320 40.6
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 1.2e-48 198.0 327 38.5
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 1.5e-48 197.6 333 37.5
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 1.7e-47 194.1 331 38.7
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 3.8e-47 193.0 341 38.4
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 1.4e-46 191.0 318 39.3
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 3.2e-46 189.9 318 38.4
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 3.2e-46 189.9 328 36.0
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 4.6e-45 186.0 347 37.8
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 4.6e-45 186.0 326 38.0
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 1.0e-44 184.9 331 38.1
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.1e-43 181.4 328 36.3
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 4.3e-43 179.5 320 36.9
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 7.3e-43 178.7 329 38.9
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 7.3e-43 178.7 329 38.9
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 7.3e-43 178.7 330 35.8
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 9.6e-43 178.3 329 38.6
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.1e-41 174.9 322 35.7
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 1.4e-41 174.5 321 36.1
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 2.4e-41 173.7 322 36.6
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 5.3e-41 172.6 354 32.5
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 5.3e-41 172.6 321 36.1
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 5.3e-41 172.6 371 31.5
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 5.3e-41 172.6 323 34.4
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 2.9e-39 166.8 324 37.0
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 6.4e-39 165.6 323 35.0
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 1.4e-38 164.5 322 35.4
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 5.4e-38 162.5 317 36.3
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.6e-37 161.0 323 34.1
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 2.1e-37 160.6 358 32.7
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 2.1e-37 160.6 324 35.8
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 2.7e-37 160.2 319 34.8
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 3.5e-37 159.8 320 32.8
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 5.3e-33 146.0 306 36.6
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 1.7e-31 141.0 249 38.6
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 2.2e-31 140.6 294 36.4
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 4.9e-31 139.4 314 33.4
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 6.4e-31 139.0 334 31.7
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 1.1e-30 138.3 293 35.2
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 7.1e-30 135.6 117 55.6
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 1.3e-26 124.8 326 30.7
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 2.8e-26 123.6 221 38.0
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 3.7e-26 123.2 103 58.3
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 6.9e-25 119.0 157 45.9
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 1.9e-22 110.9 102 53.9
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 5.1e-20 102.8 331 26.3
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 7.4e-19 99.0 233 31.8
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 9.6e-19 98.6 191 39.3
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 1.3e-18 98.2 379 24.3
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 2.1e-18 97.4 168 40.5
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 3.7e-18 96.7 193 35.8
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 8.2e-18 95.5 326 24.2
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 1.8e-17 94.4 120 38.3
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 2.4e-17 94.0 331 24.8
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 2.4e-17 94.0 133 36.8
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 1.2e-16 91.7 326 27.0
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.5e-16 91.3 126 34.1
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 2.0e-16 90.9 127 37.0
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.0e-16 90.9 163 33.7
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 2.0e-16 90.9 267 31.1
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 5.9e-16 89.4 188 31.4
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 5.9e-16 89.4 188 31.4
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 5.9e-16 89.4 330 23.6
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 7.6e-16 89.0 111 44.1
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 1.0e-15 88.6 129 35.7
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 1.7e-15 87.8 193 30.6
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 1.7e-15 87.8 131 35.9
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 2.2e-15 87.4 193 30.6
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 1.1e-14 85.1 128 39.1
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 1.4e-14 84.7 250 29.2
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 1.4e-14 84.7 230 30.9
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 3.2e-14 83.6 163 36.2
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 7.2e-14 82.4 135 36.3
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 9.3e-14 82.0 71 50.7
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 2.7e-13 80.5 255 28.2
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 7.9e-13 79.0 327 25.1
PSO210G7616 Papaver somniferum HOM05D006554 ORTHO05D008778 3.0e-12 77.0 102 45.1
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 7.4e-11 72.4 141 38.3
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.6e-10 71.2 193 30.6
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 2.2e-10 70.9 181 32.6
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 2.8e-10 70.5 157 32.5
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 1.1e-09 68.6 181 32.6
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 1.1e-09 68.6 181 32.0
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 1.4e-09 68.2 181 33.1
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 2.4e-09 67.4 184 32.6
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 9.1e-09 65.5 86 38.4
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 1.2e-08 65.1 145 28.3
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 2.6e-08 63.9 304 26.6
Cpa.g.sc130.62 Carica papaya HOM05D006554 ORTHO05D008778 4.5e-08 63.2 114 36.8
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 4.5e-08 63.2 63 47.6
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.0e-07 62.0 63 47.6
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.0e-07 62.0 96 35.4
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 2.9e-07 60.5 97 32.0
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 3.8e-07 60.1 123 26.8
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 3.8e-07 60.1 78 38.5
Pp3c18_15420 Physcomitrium patens HOM05D000336 ORTHO05D002705 3.8e-07 60.1 96 36.5
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 5.0e-07 59.7 174 25.3
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 6.5e-07 59.3 123 28.5
Psat4g111960 Pisum sativum HOM05D000336 ORTHO05D002705 8.5e-07 58.9 159 27.0
Pp3c21_9250 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.1e-06 58.5 105 32.4
CAN.G220.42 Capsicum annuum HOM05D000336 ORTHO05D002705 1.4e-06 58.2 103 28.2
SEGI_39566 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 1.4e-06 58.2 175 28.0
Pp3c19_8020 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.9e-06 57.8 66 42.4
Nitab4.5_0005460g0050 Nicotiana tabacum HOM05D000336 ORTHO05D002705 2.5e-06 57.4 148 25.7
Peaxi162Scf00108g00148 Petunia axillaris HOM05D000336 ORTHO05D002705 2.5e-06 57.4 148 26.4
Potri.010G219200 Populus trichocarpa HOM05D000336 ORTHO05D002705 2.5e-06 57.4 155 28.4
Nitab4.5_0013605g0010 Nicotiana tabacum HOM05D000336 ORTHO05D002705 3.2e-06 57.0 146 25.3
Peaxi162Scf00602g00315 Petunia axillaris HOM05D000336 ORTHO05D002705 3.2e-06 57.0 123 25.2
ClCG09G020540 Citrullus lanatus HOM05D000336 ORTHO05D002705 4.2e-06 56.6 148 24.3
Nitab4.5_0000233g0240 Nicotiana tabacum HOM05D000336 ORTHO05D002705 4.2e-06 56.6 148 25.7
MELO3C002885.2 Cucumis melo HOM05D000336 ORTHO05D002705 5.5e-06 56.2 148 23.6
CsaV3_5G025830 Cucumis sativus L. HOM05D000336 ORTHO05D002705 5.5e-06 56.2 148 23.6
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 5.5e-06 56.2 107 37.4
Lsat_1_v5_gn_1_75080 Lactuca sativa HOM05D000336 ORTHO05D002705 5.5e-06 56.2 155 25.2
Gohir.A05G345700 Gossypium hirsutum HOM05D000336 ORTHO05D002705 7.2e-06 55.8 117 27.4
Gohir.D04G084800 Gossypium hirsutum HOM05D000336 ORTHO05D002705 7.2e-06 55.8 117 27.4
Gorai.012G094500 Gossypium raimondii HOM05D000336 ORTHO05D002705 7.2e-06 55.8 117 27.4
RcHm_v2.0_Chr1g0363941 Rosa chinensis HOM05D000336 ORTHO05D002705 7.2e-06 55.8 137 26.3
Lj2g0014987 Lotus japonicus HOM05D000336 ORTHO05D002705 9.4e-06 55.5 151 26.5
Sc05g0003330 Simmondsia chinensis HOM05D000336 ORTHO05D002705 9.4e-06 55.5 154 25.3


User provided reference genes

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