Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 0.0e+00 1384.8 702 100.0
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 0.0e+00 1347.8 714 96.2
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 0.0e+00 1291.9 702 92.5
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 0.0e+00 1251.5 691 93.3
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 0.0e+00 1201.8 705 87.2
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 0.0e+00 1162.9 688 86.9
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 0.0e+00 1110.5 687 82.2
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 1.3e-270 936.4 708 66.8
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 1.5e-268 929.5 714 66.7
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 6.5e-267 924.1 716 65.4
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 4.6e-265 917.9 711 65.8
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 4.8e-262 907.9 712 65.7
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 3.4e-260 901.7 703 66.4
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 3.5e-252 875.2 708 62.6
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 7.7e-252 874.0 694 64.8
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 3.8e-251 871.7 707 64.1
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 3.2e-250 868.6 717 63.7
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 1.0e-248 863.6 717 63.5
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 9.7e-247 857.1 710 62.7
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 4.1e-245 851.7 712 61.7
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 3.5e-244 848.6 709 62.5
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 2.2e-243 845.9 697 64.0
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 2.9e-243 845.5 720 61.1
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 5.0e-243 844.7 712 61.7
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 1.1e-242 843.6 714 60.9
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 2.5e-242 842.4 652 66.1
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 4.2e-242 841.6 710 60.8
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 5.5e-242 841.3 717 60.7
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 1.2e-241 840.1 716 60.5
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 2.1e-241 839.3 713 60.9
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.5e-239 833.2 708 61.0
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 1.7e-238 829.7 739 60.1
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 1.8e-237 826.2 702 61.5
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.8e-237 826.2 708 61.3
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 3.1e-237 825.5 711 60.5
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 5.4e-237 824.7 706 61.5
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 1.3e-235 820.1 717 59.7
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 1.7e-235 819.7 716 58.7
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 2.2e-235 819.3 719 58.6
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 5.0e-235 818.1 739 58.2
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 1.5e-234 816.6 713 60.0
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 4.2e-234 815.1 709 60.4
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 1.6e-233 813.1 715 59.4
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 2.1e-233 812.8 711 59.6
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 3.6e-233 812.0 696 61.4
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 1.8e-232 809.7 692 60.8
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 4.0e-232 808.5 711 59.6
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 5.2e-232 808.1 716 58.2
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 1.2e-231 807.0 671 61.3
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 7.5e-231 804.3 708 59.5
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 1.3e-230 803.5 710 59.6
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 1.3e-230 803.5 705 59.0
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 2.8e-230 802.4 664 63.3
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 4.9e-230 801.6 741 57.4
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 6.3e-230 801.2 719 58.4
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 4.1e-229 798.5 618 65.9
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 5.4e-229 798.1 716 57.4
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.2e-228 797.0 753 56.4
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 4.5e-228 795.0 710 58.3
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 5.9e-228 794.7 750 56.3
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 7.8e-228 794.3 743 56.7
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 6.6e-227 791.2 708 59.0
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 8.6e-227 790.8 710 58.9
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 4.3e-226 788.5 711 58.1
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 1.4e-224 783.5 712 57.2
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 3.4e-223 778.9 720 57.5
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 8.3e-222 774.2 693 57.3
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 1.4e-221 773.5 691 58.0
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 1.8e-221 773.1 700 57.1
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 5.4e-221 771.5 709 56.6
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 2.7e-220 769.2 680 59.6
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 3.5e-220 768.8 600 66.3
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 5.0e-219 765.0 602 65.3
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 1.1e-218 763.8 653 59.9
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 1.5e-218 763.5 723 55.6
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 1.9e-218 763.1 705 55.7
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 4.0e-216 755.4 705 55.2
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 4.4e-215 751.9 778 52.8
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 1.6e-212 743.4 675 57.0
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 4.6e-212 741.9 684 56.7
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 4.3e-210 735.3 706 56.5
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 4.3e-210 735.3 707 55.9
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 1.6e-209 733.4 705 56.0
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 2.8e-209 732.6 706 56.5
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 3.6e-209 732.3 706 56.7
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 1.1e-208 730.7 706 56.2
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 1.1e-208 730.7 706 56.2
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 1.4e-208 730.3 706 55.9
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 4.0e-208 728.8 705 55.5
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 1.5e-207 726.9 651 58.8
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 1.7e-206 723.4 705 55.0
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 3.7e-206 722.2 734 54.4
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 4.6e-204 715.3 706 55.5
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 6.0e-204 714.9 698 54.7
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 4.3e-202 708.8 606 59.9
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 8.1e-201 704.5 593 63.2
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 1.1e-197 694.1 710 53.0
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 2.7e-196 689.5 712 52.1
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 5.6e-194 681.8 719 50.8
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 1.7e-190 670.2 705 50.8
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 2.7e-188 662.9 636 56.9
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 4.6e-188 662.1 700 52.0
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 3.8e-174 615.9 528 60.8
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 4.2e-173 612.5 693 49.4
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 1.4e-165 587.4 526 60.8
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 5.1e-163 578.9 423 70.7
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.9e-162 577.0 605 49.4
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 5.9e-159 565.5 641 50.2
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 9.4e-133 478.4 495 53.3
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 2.2e-129 467.2 708 44.1
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 2.5e-125 453.8 418 57.4
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 2.9e-118 430.3 766 37.1
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 5.4e-112 409.5 744 36.3
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 8.9e-107 392.1 705 36.2
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 9.9e-90 335.5 477 41.3
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 7.6e-82 309.3 332 49.7
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 2.7e-79 300.8 324 47.8
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 2.2e-73 281.2 299 52.8
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 1.4e-59 235.3 289 47.1
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 6.9e-59 233.0 236 51.3
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 1.0e-49 202.6 251 43.8
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 1.3e-46 192.2 266 44.7
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 1.9e-40 171.8 427 29.0
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 4.6e-39 167.2 162 52.5
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 8.8e-30 136.3 118 59.3
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 9.7e-29 132.9 704 25.3
THA.LOC104820325 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 2.2e-28 131.7 155 47.7
Oeu048620.1 Olea europaea HOM05D005666 ORTHO05D007183 1.1e-24 119.4 78 74.4
A02p05250 Brassica napus HOM05D005666 ORTHO05D007183 1.7e-17 95.5 305 27.9
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 7.5e-13 80.1 63 69.8
Thecc.05G064500 Theobroma cacao HOM05D005666 ORTHO05D007183 2.4e-11 75.1 101 42.6
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 9.1e-11 73.2 68 52.9
FvH4_6g51172 Fragaria vesca HOM05D005666 ORTHO05D007183 1.1e-08 66.2 59 61.0
SEGI_03684 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 2.5e-08 65.1 79 44.3


User provided reference genes

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