Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006872 Solanum tuberosum HOM05D006848 ORTHO05D008445 5.0e-126 454.5 242 100.0
Solyc01g087040.2 Solanum lycopersicum HOM05D006848 ORTHO05D008445 1.9e-112 409.5 242 89.7
Sopen01g034120 Solanum pennellii HOM05D006848 ORTHO05D008445 2.0e-111 406.0 243 89.7
CAN.G170.111 Capsicum annuum HOM05D006848 ORTHO05D008445 2.1e-108 396.0 247 87.0
Nitab4.5_0002477g0050 Nicotiana tabacum HOM05D006848 ORTHO05D008445 4.1e-104 381.7 246 84.1
Nitab4.5_0000634g0080 Nicotiana tabacum HOM05D006848 ORTHO05D008445 1.8e-99 366.3 216 84.7
Peaxi162Scf00347g00071 Petunia axillaris HOM05D006848 ORTHO05D008445 1.0e-94 350.5 246 80.1
Sabra09G0046200 Salix brachista HOM05D006848 ORTHO05D008445 1.9e-93 346.3 240 74.2
Peaxi162Scf00428g00063 Petunia axillaris HOM05D006848 ORTHO05D008445 5.6e-93 344.7 199 86.4
Potri.009G062500 Populus trichocarpa HOM05D006848 ORTHO05D008445 2.8e-92 342.4 240 74.2
FvH4_7g00900 Fragaria vesca HOM05D006848 ORTHO05D008445 1.4e-91 340.1 221 79.2
FAN10G1997 Fragaria x ananassa HOM05D006848 ORTHO05D008445 1.7e-89 333.2 227 77.5
Thecc.01G412000 Theobroma cacao HOM05D006848 ORTHO05D008445 1.9e-88 329.7 242 70.7
Hma1.2p1_0312F.1_g121500 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 4.2e-88 328.6 247 72.1
Ciclev10032624m.g Citrus clementina HOM05D006848 ORTHO05D008445 7.1e-88 327.8 240 71.2
COL.COLO4_23924 Corchorus olitorius HOM05D006848 ORTHO05D008445 9.3e-88 327.4 243 72.4
TWI53G1868 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 1.6e-87 326.6 241 71.8
Duzib138G1675 Durio zibethinus HOM05D006848 ORTHO05D008445 3.5e-87 325.5 235 71.5
Aqoxy3G03705 Aquilegia oxysepala HOM05D006848 ORTHO05D008445 1.3e-86 323.6 211 74.4
Rhsim07G0054800 Rhododendron simsii HOM05D006848 ORTHO05D008445 1.7e-86 323.2 247 70.9
Lalb_Chr01g0015361 Lupinus albus HOM05D006848 ORTHO05D008445 2.3e-86 322.8 241 71.4
Sed0006624 Sechium edule HOM05D006848 ORTHO05D008445 2.3e-86 322.8 248 68.5
Cpa.g.sc386.5 Carica papaya HOM05D006848 ORTHO05D008445 5.1e-86 321.6 212 76.9
VMungo1080G1360 Vigna mungo HOM05D006848 ORTHO05D008445 1.5e-85 320.1 203 79.8
Haze_03213 Corylus avellana HOM05D006848 ORTHO05D008445 2.5e-85 319.3 247 72.1
Gohir.D08G063100 Gossypium hirsutum HOM05D006848 ORTHO05D008445 2.5e-85 319.3 213 76.1
Gorai.004G065300 Gossypium raimondii HOM05D006848 ORTHO05D008445 2.5e-85 319.3 213 76.1
MD07G1008600 Malus domestica HOM05D006848 ORTHO05D008445 5.6e-85 318.2 248 73.0
Cc02_g27800 Coffea canephora HOM05D006848 ORTHO05D008445 7.3e-85 317.8 177 86.4
EL10Ac2g03652 Beta vulgaris HOM05D006848 ORTHO05D008445 9.6e-85 317.4 246 68.7
Eucgr.G03390 Eucalyptus grandis HOM05D006848 ORTHO05D008445 1.3e-84 317.0 244 67.6
ClCG09G004240 Citrullus lanatus HOM05D006848 ORTHO05D008445 1.6e-84 316.6 248 66.5
Migut.B01319 Erythranthe guttata HOM05D006848 ORTHO05D008445 2.1e-84 316.2 247 71.3
TPR.G12217 Trifolium pratense HOM05D006848 ORTHO05D008445 2.1e-84 316.2 199 77.4
vmacro13656 Vaccinium macrocarpon HOM05D006848 ORTHO05D008445 2.1e-84 316.2 242 68.6
Glyma.08G154300 Glycine max HOM05D006848 ORTHO05D008445 2.8e-84 315.8 217 74.2
Sc10g0000020 Simmondsia chinensis HOM05D006848 ORTHO05D008445 2.8e-84 315.8 180 83.3
RcHm_v2.0_Chr3g0473601 Rosa chinensis HOM05D006848 ORTHO05D008445 3.6e-84 315.5 197 82.2
CANSAT80G2127 Cannabis sativa HOM05D006848 ORTHO05D008445 4.8e-84 315.1 244 67.2
Glyma.15G273300 Glycine max HOM05D006848 ORTHO05D008445 8.1e-84 314.3 235 71.1
Gohir.A08G053600 Gossypium hirsutum HOM05D006848 ORTHO05D008445 8.1e-84 314.3 213 75.1
QL04p007215 Quercus lobata HOM05D006848 ORTHO05D008445 1.8e-83 313.2 183 83.1
Oeu036185.1 Olea europaea HOM05D006848 ORTHO05D008445 1.5e-82 310.1 245 70.6
PGR031G3843 Punica granatum HOM05D006848 ORTHO05D008445 3.4e-82 308.9 249 69.5
MD02G1313800 Malus domestica HOM05D006848 ORTHO05D008445 4.4e-82 308.5 248 67.3
Atru.chr11.2648 Acer truncatum HOM05D006848 ORTHO05D008445 7.6e-82 307.8 242 71.1
CsaV3_7G031150 Cucumis sativus L. HOM05D006848 ORTHO05D008445 7.6e-82 307.8 243 66.3
HanXRQChr01g0016151 Helianthus annuus HOM05D006848 ORTHO05D008445 7.6e-82 307.8 245 68.6
CiPaw.13G004400 Carya illinoinensis HOM05D006848 ORTHO05D008445 1.7e-81 306.6 184 79.3
Phvul.005G020200 Phaseolus vulgaris HOM05D006848 ORTHO05D008445 1.7e-81 306.6 232 71.1
TWI09G1547 Tripterygium wilfordii HOM05D006848 ORTHO05D008445 1.7e-81 306.6 200 76.0
FAN01G1688 Fragaria x ananassa HOM05D006848 ORTHO05D008445 2.2e-81 306.2 221 73.3
DCAR_029663 Daucus carota HOM05D006848 ORTHO05D008445 6.4e-81 304.7 186 80.1
Ca_14368_v3 Cicer arietinum L. HOM05D006848 ORTHO05D008445 8.4e-81 304.3 183 79.8
Eucgr.H02489 Eucalyptus grandis HOM05D006848 ORTHO05D008445 1.4e-80 303.5 186 78.5
MELO3C023542.2 Cucumis melo HOM05D006848 ORTHO05D008445 3.2e-80 302.4 185 77.3
Lj7A569T67 Lonicera japonica HOM05D006848 ORTHO05D008445 3.2e-80 302.4 172 84.3
MBI01_g27616_MAGBIO Magnolia biondii HOM05D006848 ORTHO05D008445 3.2e-80 302.4 248 65.7
TAR623G0130 Trochodendron aralioides HOM05D006848 ORTHO05D008445 3.2e-80 302.4 177 81.4
Medtr3g028150 Medicago truncatula HOM05D006848 ORTHO05D008445 4.2e-80 302.0 177 80.2
Psat5g204320 Pisum sativum HOM05D006848 ORTHO05D008445 9.3e-80 300.8 171 83.0
AL5G46400 Arabidopsis lyrata HOM05D006848 ORTHO05D008445 1.2e-79 300.4 218 71.6
PSO384G0049 Papaver somniferum HOM05D006848 ORTHO05D008445 1.2e-79 300.4 195 76.4
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 1.6e-79 300.1 190 75.8
SalBow5G3403 Salvia bowleyana HOM05D006848 ORTHO05D008445 2.7e-79 299.3 244 65.2
Carub.0005s3015 Capsella rubella HOM05D006848 ORTHO05D008445 3.5e-79 298.9 219 69.9
CARHR291430 Cardamine hirsuta HOM05D006848 ORTHO05D008445 4.6e-79 298.5 208 71.6
TAR623G0094 Trochodendron aralioides HOM05D006848 ORTHO05D008445 7.9e-79 297.7 243 67.5
PSO135G0340 Papaver somniferum HOM05D006848 ORTHO05D008445 1.0e-78 297.4 195 75.9
BolC3t15604H Brassica oleracea HOM05D006848 ORTHO05D008445 1.5e-77 293.5 226 67.7
BcaC01g04883 Brassica carinata HOM05D006848 ORTHO05D008445 1.9e-77 293.1 226 67.7
THA.LOC104819691 Tarenaya hassleriana HOM05D006848 ORTHO05D008445 1.9e-77 293.1 191 74.3
AUR62009377 Chenopodium quinoa HOM05D006848 ORTHO05D008445 2.5e-77 292.7 177 78.5
FAN06G1876 Fragaria x ananassa HOM05D006848 ORTHO05D008445 3.3e-77 292.4 215 72.6
A03p27190 Brassica napus HOM05D006848 ORTHO05D008445 1.3e-76 290.4 226 67.3
BraA03t11932Z Brassica rapa HOM05D006848 ORTHO05D008445 1.3e-76 290.4 226 67.3
Lsat_1_v5_gn_1_107841 Lactuca sativa HOM05D006848 ORTHO05D008445 4.8e-76 288.5 175 78.9
CDE05G1882 Ceratophyllum demersum HOM05D006848 ORTHO05D008445 6.2e-76 288.1 213 70.0
arahy.Tifrunner.gnm1.ann1.27LE56 Arachis hypogaea HOM05D006848 ORTHO05D008445 8.1e-76 287.7 214 69.6
BcaB01g02988 Brassica carinata HOM05D006848 ORTHO05D008445 2.4e-75 286.2 225 66.7
arahy.Tifrunner.gnm1.ann1.9ZN1DC Arachis hypogaea HOM05D006848 ORTHO05D008445 9.0e-75 284.3 214 69.2
Prupe.2G012000 Prunus persica HOM05D006848 ORTHO05D008445 2.6e-74 282.7 181 74.6
ECA248G3622 Erigeron canadensis HOM05D006848 ORTHO05D008445 4.5e-74 282.0 245 63.7
ATR0605G006 Amborella trichopoda HOM05D006848 ORTHO05D008445 7.6e-74 281.2 196 70.9
SEGI_25651 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 3.8e-73 278.9 196 69.9
Nn113s43373 Nelumbo nucifera HOM05D006848 ORTHO05D008445 4.9e-73 278.5 261 59.0
Nn2g15435 Nelumbo nucifera HOM05D006848 ORTHO05D008445 4.9e-73 278.5 261 59.0
AUR62023058 Chenopodium quinoa HOM05D006848 ORTHO05D008445 1.0e-70 270.8 246 59.3
SGA_v2.0_scaffold167G38443 Striga asiatica HOM05D006848 ORTHO05D008445 8.7e-70 267.7 246 61.4
C03p32680 Brassica napus HOM05D006848 ORTHO05D008445 1.5e-69 266.9 207 68.6
AagrBONN_evm.TU.Sc2ySwM_228.3199 Anthoceros agrestis HOM05D006848 ORTHO05D008445 2.5e-69 266.2 189 63.5
Manes.10G144600 Manihot esculenta HOM05D006848 ORTHO05D008445 5.6e-69 265.0 205 71.7
Aa31LG10G17430 Aethionema arabicum HOM05D006848 ORTHO05D008445 4.0e-67 258.8 150 80.7
HPP92_007477 Vanilla planifolia HOM05D006848 ORTHO05D008445 1.2e-66 257.3 234 59.0
Zm00001eb034740 Zea mays HOM05D006848 ORTHO05D008445 2.6e-66 256.1 178 68.5
Thhalv10006361m.g Eutrema salsugineum HOM05D006848 ORTHO05D008445 5.8e-66 255.0 220 62.3
Sp1g00010 Schrenkiella parvula HOM05D006848 ORTHO05D008445 5.8e-66 255.0 210 63.3
Sp5g00040 Schrenkiella parvula HOM05D006848 ORTHO05D008445 5.8e-66 255.0 210 63.3
SMO217G0004 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 1.3e-65 253.8 175 66.3
SMO356G0122 Selaginella moellendorffii HOM05D006848 ORTHO05D008445 1.3e-65 253.8 175 66.3
Lj1g0010524 Lotus japonicus HOM05D006848 ORTHO05D008445 7.9e-63 244.6 172 70.3
Mapoly0075s0034 Marchantia polymorpha HOM05D006848 ORTHO05D008445 1.3e-62 243.8 177 64.4
Os08g0504500 Oryza sativa ssp. japonica HOM05D006848 ORTHO05D008445 1.3e-62 243.8 169 68.6
Dinv43453 Davidia involucrata HOM05D006848 ORTHO05D008445 8.7e-62 241.1 200 70.5
Pp3c4_11800 Physcomitrium patens HOM05D006848 ORTHO05D008445 7.4e-61 238.0 193 60.6
AT3G63540 Arabidopsis thaliana HOM05D006848 ORTHO05D008445 1.4e-59 233.8 138 81.2
CBR_g23941 Chara braunii HOM05D006848 ORTHO05D008445 2.9e-57 226.1 175 61.1
Actinidia36713 Actinidia chinensis HOM05D006848 ORTHO05D008445 7.9e-55 218.0 132 79.5
RcHm_v2.0_Chr1g0315791 Rosa chinensis HOM05D006848 ORTHO05D008445 5.1e-46 188.7 120 73.3
Hma1.2p1_0137F.1_g062450 Hydrangea macrophylla HOM05D006848 ORTHO05D008445 2.5e-45 186.4 124 75.8
CDE05G3657 Ceratophyllum demersum HOM05D000031 ORTHO05D008445 4.8e-44 182.2 124 70.2
Actinidia24670 Actinidia chinensis HOM05D006848 ORTHO05D008445 2.0e-37 160.2 105 77.1
MCO14G442 Micromonas commoda HOM05D006848 ORTHO05D008445 2.4e-27 126.7 215 38.6
SEGI_20764 Sequoiadendron giganteum HOM05D006848 ORTHO05D008445 2.5e-24 116.7 88 70.5
Cre03.g198850 Chlamydomonas reinhardtii HOM05D006848 ORTHO05D008445 8.0e-23 111.7 196 34.7
PRCOL_00004469 Prasinoderma coloniale HOM05D006848 ORTHO05D008445 3.2e-16 89.7 187 35.3
A04p00030 Brassica napus HOM05D006848 ORTHO05D008445 1.7e-09 67.4 55 56.4
Hund17393 Selenicereus undatus HOM05D006773 ORTHO05D008775 3.8e-09 66.2 152 28.9
DCAR_031498 Daucus carota HOM05D006773 ORTHO05D008775 6.6e-09 65.5 152 30.9
HanXRQChr05g0160801 Helianthus annuus HOM05D006773 ORTHO05D008775 8.6e-09 65.1 152 28.9
Ah.16g108660 Amaranthus hybridus HOM05D006773 ORTHO05D008775 1.9e-08 63.9 152 28.3
Oeu025718.1 Olea europaea HOM05D006773 ORTHO05D008775 1.9e-08 63.9 152 30.3
ECA246G0400 Erigeron canadensis HOM05D006773 ORTHO05D005980 7.3e-08 62.0 152 27.6
Lsat_1_v5_gn_6_96860 Lactuca sativa HOM05D006773 ORTHO05D008775 7.3e-08 62.0 147 28.6
Solyc04g064670.3 Solanum lycopersicum HOM05D006773 ORTHO05D008775 9.5e-08 61.6 152 28.3
Sopen04g026630 Solanum pennellii HOM05D006773 ORTHO05D008775 9.5e-08 61.6 152 28.3
PGSC0003DMG401024815 Solanum tuberosum HOM05D006773 ORTHO05D008775 9.5e-08 61.6 152 28.3
MSTRG.22383 Avicennia marina HOM05D006773 ORTHO05D008775 1.6e-07 60.8 152 26.3
Cc10_g12990 Coffea canephora HOM05D006773 ORTHO05D008775 1.6e-07 60.8 152 27.6
Thecc.08G143200 Theobroma cacao HOM05D006773 ORTHO05D008775 1.6e-07 60.8 152 27.6
QL09p028661 Quercus lobata HOM05D006773 ORTHO05D008775 2.1e-07 60.5 152 28.3
ClCG09G009710 Citrullus lanatus HOM05D006773 ORTHO05D008775 2.8e-07 60.1 152 28.3
Lj7C363G2 Lonicera japonica HOM05D006773 ORTHO05D008775 2.8e-07 60.1 147 27.2
CAN.G2.47 Capsicum annuum HOM05D006773 ORTHO05D008775 3.6e-07 59.7 152 28.3
MBI06_g35966_MAGBIO Magnolia biondii HOM05D006773 ORTHO05D008775 3.6e-07 59.7 152 27.0
Nitab4.5_0004095g0010 Nicotiana tabacum HOM05D006773 ORTHO05D008775 3.6e-07 59.7 152 27.6
EL10Ac1g01469 Beta vulgaris HOM05D006773 ORTHO05D008775 4.7e-07 59.3 152 27.6
Duzib093G1219 Durio zibethinus HOM05D006773 ORTHO05D008775 4.7e-07 59.3 152 27.6
unitig_52.g17539 Utricularia gibba HOM05D006773 ORTHO05D008775 4.7e-07 59.3 152 26.3
Cfa018374 Carpinus fangiana HOM05D006773 ORTHO05D008775 6.1e-07 58.9 152 27.6
Nitab4.5_0000445g0090 Nicotiana tabacum HOM05D006773 ORTHO05D008775 6.1e-07 58.9 152 27.0
Sc20g0003340 Simmondsia chinensis HOM05D006773 ORTHO05D008775 8.0e-07 58.5 152 28.3
ATR1136G180 Amborella trichopoda HOM05D006773 ORTHO05D008775 1.0e-06 58.2 152 27.0
AUR62013482 Chenopodium quinoa HOM05D006773 ORTHO05D008775 1.0e-06 58.2 152 26.3
AUR62026790 Chenopodium quinoa HOM05D006773 ORTHO05D008775 1.0e-06 58.2 152 26.3
Migut.N03240 Erythranthe guttata HOM05D006773 ORTHO05D008775 1.0e-06 58.2 152 25.7
Eucgr.F02746 Eucalyptus grandis HOM05D006773 ORTHO05D008775 1.0e-06 58.2 152 28.9
MBI06_g41413_MAGBIO Magnolia biondii HOM05D006773 ORTHO05D008775 1.0e-06 58.2 152 27.0
Peaxi162Scf00263g00028 Petunia axillaris HOM05D006773 ORTHO05D008775 1.0e-06 58.2 152 28.3
SMO270G0074 Selaginella moellendorffii HOM05D006773 ORTHO05D008775 1.0e-06 58.2 150 28.0
Atru.chr13.1690 Acer truncatum HOM05D006773 ORTHO05D008775 1.8e-06 57.4 152 27.6
CiPaw.15G022300 Carya illinoinensis HOM05D006773 ORTHO05D008775 1.8e-06 57.4 147 29.3
MD10G1012400 Malus domestica HOM05D006773 ORTHO05D008775 1.8e-06 57.4 147 26.5
Os12g0190200 Oryza sativa ssp. japonica HOM05D006773 ORTHO05D008775 1.8e-06 57.4 152 27.0
Sed0012245 Sechium edule HOM05D006773 ORTHO05D008775 2.3e-06 57.0 152 27.6
HPP92_004476 Vanilla planifolia HOM05D006773 ORTHO05D008775 3.0e-06 56.6 146 29.5
Ciclev10002228m.g Citrus clementina HOM05D006773 ORTHO05D008775 4.0e-06 56.2 147 27.2
Nn5g28592 Nelumbo nucifera HOM05D006773 ORTHO05D008775 4.0e-06 56.2 151 26.5
GSVIVG01010018001 Vitis vinifera HOM05D006773 ORTHO05D008775 4.0e-06 56.2 147 27.9
arahy.Tifrunner.gnm1.ann1.61R3GI Arachis hypogaea HOM05D006773 ORTHO05D008775 5.2e-06 55.8 152 26.3
CsaV3_7G025030 Cucumis sativus L. HOM05D006773 ORTHO05D008775 5.2e-06 55.8 152 27.6
Dinv25798 Davidia involucrata HOM05D006773 ORTHO05D008775 6.8e-06 55.5 152 27.0
MD05G1012500 Malus domestica HOM05D006773 ORTHO05D008775 6.8e-06 55.5 147 26.5
THA.LOC104813693 Tarenaya hassleriana HOM05D006773 ORTHO05D008775 6.8e-06 55.5 147 26.5
vmacro00729 Vaccinium macrocarpon HOM05D006773 ORTHO05D008775 6.8e-06 55.5 147 26.5
Lalb_Chr08g0240801 Lupinus albus HOM05D006773 ORTHO05D008775 8.9e-06 55.1 152 26.3


User provided reference genes

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