Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 6.9e-204 713.8 364 100.0
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.2e-169 598.6 376 86.2
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 4.0e-167 591.7 368 85.9
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 5.4e-156 554.7 381 78.2
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 6.3e-149 531.2 384 76.3
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.0e-147 526.2 384 75.5
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 2.6e-142 509.2 299 88.6
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.2e-107 394.0 387 57.9
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.7e-107 392.9 387 57.1
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 5.8e-102 375.2 381 58.8
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 5.8e-102 375.2 381 58.8
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 2.9e-101 372.9 389 56.8
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 6.4e-101 371.7 393 56.7
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.6e-99 367.1 390 56.2
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.0e-98 364.4 388 56.2
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.3e-98 364.0 377 57.0
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 1.8e-98 363.6 381 54.3
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 2.8e-96 356.3 384 53.6
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.1e-95 354.4 379 54.6
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 7.6e-94 348.2 382 53.7
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.2e-91 340.9 380 54.5
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 1.6e-91 340.5 332 58.1
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 2.1e-91 340.1 385 54.0
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 2.8e-88 329.7 407 51.6
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.4e-87 326.6 390 50.8
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 4.0e-87 325.9 366 54.6
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 4.0e-87 325.9 366 54.9
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 6.9e-87 325.1 389 51.2
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.2e-86 324.3 394 50.0
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.5e-86 323.9 390 51.5
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 4.5e-86 322.4 390 51.3
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 3.8e-85 319.3 369 54.5
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 2.7e-83 313.2 414 47.1
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 7.9e-83 311.6 371 54.2
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 2.3e-82 310.1 373 52.3
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 3.0e-82 309.7 385 49.1
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 2.2e-80 303.5 379 50.4
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 1.5e-78 297.4 396 48.2
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.3e-77 294.3 398 49.0
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 1.1e-76 291.2 371 52.0
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.9e-76 290.4 387 45.0
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 7.2e-76 288.5 384 48.7
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 6.1e-75 285.4 388 46.9
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 1.0e-74 284.6 390 46.9
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 6.7e-74 282.0 394 46.4
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 8.8e-74 281.6 408 43.9
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 4.3e-73 279.3 390 45.9
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 4.3e-73 279.3 393 46.8
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 5.7e-73 278.9 388 45.6
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.5e-70 270.8 386 45.1
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 3.4e-70 269.6 395 46.3
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.4e-70 269.6 385 46.0
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 7.7e-70 268.5 389 44.5
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.3e-69 267.7 421 42.5
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 2.9e-69 266.5 425 43.1
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.8e-69 266.2 387 44.2
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 6.5e-69 265.4 427 41.0
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 8.5e-69 265.0 413 44.6
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.4e-68 264.2 419 43.7
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 3.2e-68 263.1 420 41.7
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 4.2e-68 262.7 364 46.4
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 5.5e-68 262.3 415 44.3
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 7.2e-68 261.9 392 46.2
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 9.4e-68 261.5 385 44.9
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.6e-67 260.8 423 42.8
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.7e-67 260.0 385 45.2
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 7.9e-67 258.5 386 42.2
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 3.0e-66 256.5 390 44.4
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.7e-66 255.4 419 40.6
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 2.8e-64 250.0 375 43.2
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.1e-63 248.1 384 43.8
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.4e-63 247.7 418 40.4
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.1e-63 246.1 264 52.7
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 5.3e-63 245.7 204 65.2
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.0e-62 243.8 404 41.6
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 4.5e-62 242.7 392 42.3
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 5.9e-62 242.3 426 40.1
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 7.7e-62 241.9 335 46.6
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 2.9e-61 240.0 399 42.1
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.9e-60 237.3 388 42.5
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.2e-60 236.5 407 40.0
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 9.4e-60 235.0 412 41.0
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.1e-59 233.8 406 40.1
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.1e-59 233.8 385 40.5
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 3.6e-59 233.0 335 45.4
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 4.7e-59 232.6 412 41.0
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 1.4e-58 231.1 391 39.4
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 3.0e-58 229.9 388 41.0
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 6.7e-58 228.8 391 39.9
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 4.4e-57 226.1 407 40.5
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 5.7e-57 225.7 372 41.9
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 3.7e-56 223.0 413 40.2
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 6.3e-56 222.2 410 40.7
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 6.3e-56 222.2 378 43.7
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 8.2e-56 221.9 407 40.8
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 2.4e-55 220.3 407 39.8
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 2.4e-55 220.3 407 39.8
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 9.1e-55 218.4 407 39.6
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 9.1e-55 218.4 324 44.1
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 2.6e-54 216.9 407 39.8
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 4.5e-54 216.1 382 41.4
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 4.5e-54 216.1 407 39.8
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 5.9e-54 215.7 398 37.9
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.3e-53 214.5 409 39.4
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 1.3e-53 214.5 416 38.2
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 5.5e-52 209.1 378 37.8
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 2.0e-49 200.7 274 46.4
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 5.7e-49 199.1 411 38.4
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 7.5e-49 198.7 388 38.4
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 2.8e-48 196.8 418 36.1
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.8e-47 194.1 418 35.9
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 4.5e-46 189.5 409 35.7
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 3.2e-44 183.3 284 43.3
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 4.2e-44 183.0 409 36.2
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 7.2e-44 182.2 409 37.2
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 9.4e-44 181.8 409 35.9
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 6.8e-42 175.6 265 44.5
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.3e-40 171.4 370 36.8
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 4.1e-39 166.4 207 47.8
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 5.4e-39 166.0 401 36.7
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.6e-38 164.5 387 35.4
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 3.8e-37 159.8 230 43.5
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 1.9e-36 157.5 241 41.5
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.5e-36 157.1 240 41.2
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.6e-35 154.5 280 38.9
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 2.1e-35 154.1 334 38.6
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 6.1e-35 152.5 236 44.5
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 6.1e-35 152.5 234 40.6
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 8.0e-35 152.1 316 37.0
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 8.9e-34 148.7 408 33.3
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 2.0e-33 147.5 236 42.8
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 2.6e-33 147.1 229 40.6
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 4.4e-33 146.4 234 39.3
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 5.7e-33 146.0 234 40.6
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.7e-32 144.4 233 40.8
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.9e-32 143.7 239 37.7
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.4e-31 141.4 239 38.1
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.4e-31 139.4 236 37.3
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 3.5e-30 136.7 217 40.1
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.0e-29 135.2 236 41.1
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.7e-29 134.4 196 41.3
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.3e-29 134.0 247 36.4
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 2.9e-29 133.7 253 38.3
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 3.9e-29 133.3 379 31.4
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.0e-29 132.9 236 38.1
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 1.1e-28 131.7 240 40.8
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.1e-28 131.7 236 39.4
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.3e-28 129.8 237 36.3
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 4.3e-28 129.8 251 36.7
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 9.5e-28 128.6 210 39.0
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.0e-26 125.2 213 39.0
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.0e-26 125.2 256 37.1
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 4.0e-26 123.2 235 36.2
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 8.9e-26 122.1 161 54.0
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 4.9e-24 116.3 224 34.8
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 1.1e-23 115.2 221 35.3
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 8.6e-21 105.5 154 47.4
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 4.3e-20 103.2 222 37.4
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 7.3e-20 102.4 90 54.4
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.7e-19 99.8 103 44.7
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 8.1e-19 99.0 102 44.1
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.1e-18 98.6 104 45.2
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 1.1e-18 98.6 104 45.2
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 5.2e-18 96.3 196 38.8
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 8.9e-18 95.5 131 46.6
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.1e-15 88.6 124 41.1
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 6.2e-11 72.8 47 68.1
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 1.2e-09 68.6 126 40.5
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 1.7e-08 64.7 188 32.4
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 4.9e-08 63.2 87 49.4
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 8.4e-08 62.4 51 52.9


User provided reference genes

Program Settings