Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 4.9e-230 800.8 412 100.0
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.5e-215 752.7 412 93.9
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 1.3e-214 749.6 412 93.7
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 4.9e-198 694.5 416 88.0
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 2.4e-197 692.2 416 87.5
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.5e-191 672.9 416 84.4
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.9e-173 612.8 351 90.0
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 2.8e-153 545.8 419 68.7
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.8e-147 526.6 400 68.8
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 2.0e-146 523.1 422 67.3
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 2.2e-145 519.6 406 67.7
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 2.6e-143 512.7 406 66.0
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 2.6e-143 512.7 417 66.7
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.7e-143 511.1 392 67.9
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.9e-142 509.2 392 67.6
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 5.0e-142 508.4 423 64.1
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 5.0e-142 508.4 413 64.6
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.2e-141 505.8 368 71.5
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 3.2e-141 505.8 392 67.6
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 7.2e-141 504.6 400 65.2
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 9.4e-141 504.2 414 65.5
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.4e-139 500.4 400 65.2
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 6.7e-139 498.0 408 64.7
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 8.8e-139 497.7 421 62.7
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 2.0e-138 496.5 402 65.7
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 4.4e-138 495.4 394 65.0
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 4.4e-138 495.4 398 64.8
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 7.5e-138 494.6 396 64.6
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.7e-137 493.4 396 64.1
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 2.2e-137 493.0 405 64.9
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 2.8e-137 492.7 399 63.7
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 7.0e-136 488.0 399 63.2
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 7.7e-135 484.6 455 58.7
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 2.9e-134 482.6 396 65.2
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 2.9e-134 482.6 402 64.7
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 2.5e-133 479.6 396 65.7
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 4.2e-133 478.8 404 62.4
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 4.2e-133 478.8 419 63.0
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 7.2e-133 478.0 393 63.9
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 9.4e-133 477.6 408 64.2
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 1.0e-131 474.2 453 57.2
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 1.4e-131 473.8 422 60.7
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 3.7e-129 465.7 389 63.5
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.4e-128 463.8 394 62.2
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 4.1e-128 462.2 424 59.9
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 7.0e-128 461.5 415 60.5
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 4.5e-127 458.8 396 61.4
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 7.7e-127 458.0 363 68.0
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 6.5e-126 454.9 403 59.6
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 6.5e-126 454.9 420 60.5
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 8.5e-126 454.5 419 60.6
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 1.5e-125 453.8 403 59.3
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.9e-125 453.4 399 60.7
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 1.9e-125 453.4 421 60.1
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 2.5e-125 453.0 392 60.7
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 2.5e-125 453.0 338 70.1
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 5.5e-125 451.8 392 60.7
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 7.2e-125 451.4 392 60.5
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.6e-124 450.3 399 60.7
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 3.6e-124 449.1 392 59.7
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 3.6e-124 449.1 396 59.6
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 6.1e-124 448.4 402 58.7
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 8.0e-124 448.0 346 67.3
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 1.4e-123 447.2 402 59.5
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 4.0e-123 445.7 401 58.9
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 4.4e-122 442.2 403 58.3
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 4.9e-121 438.7 442 58.4
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 6.3e-121 438.3 421 57.0
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.1e-120 437.6 418 56.9
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 9.1e-120 434.5 401 57.6
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.2e-119 434.1 432 56.2
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.6e-119 433.7 426 55.4
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.0e-119 433.3 402 58.0
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 3.5e-119 432.6 401 57.4
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 3.5e-119 432.6 401 57.4
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.3e-118 429.9 424 55.4
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 3.8e-118 429.1 396 57.8
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.1e-117 427.6 399 58.9
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.5e-117 426.4 377 59.9
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 9.5e-117 424.5 412 56.1
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 9.5e-117 424.5 405 56.8
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 2.1e-116 423.3 418 56.0
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 2.8e-116 422.9 395 58.0
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.7e-116 422.2 326 67.2
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.0e-115 421.0 325 68.6
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 4.0e-115 419.1 416 57.0
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 8.9e-115 417.9 399 57.1
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.5e-114 417.2 418 58.4
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 3.4e-114 416.0 348 62.9
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 1.2e-111 407.5 431 55.7
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 3.5e-111 406.0 362 60.2
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.0e-110 402.9 424 53.1
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 1.1e-109 401.0 318 66.4
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 7.3e-109 398.3 420 55.0
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 9.8e-106 387.9 394 55.3
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.4e-104 384.0 346 62.1
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.6e-100 370.5 404 52.5
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.0e-99 365.9 282 69.1
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 1.2e-98 364.4 333 59.2
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.3e-97 360.9 281 68.3
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 4.9e-97 359.0 330 58.8
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 7.1e-96 355.1 283 67.8
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 9.2e-96 354.8 281 68.3
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 1.7e-94 350.5 298 61.1
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.1e-93 347.8 451 48.1
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 6.8e-91 338.6 302 59.9
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 4.4e-90 335.9 325 56.9
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 8.4e-89 331.6 351 53.8
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 1.0e-78 298.1 319 56.1
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.7e-78 297.4 367 48.8
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 3.8e-65 253.1 207 61.4
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 1.4e-64 251.1 220 59.5
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 9.0e-59 231.9 411 38.0
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 4.2e-56 223.0 414 36.2
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 1.1e-53 214.9 127 84.3
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 7.4e-53 212.2 131 82.4
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 1.4e-48 198.0 414 33.6
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 2.8e-44 183.7 119 77.3
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 2.6e-26 124.0 101 64.4
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.0e-22 112.1 104 63.5
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.8e-22 111.3 95 66.3
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 8.8e-22 109.0 104 55.8
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.0e-21 107.8 87 64.4
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 2.7e-18 97.4 105 51.4
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.5e-16 90.9 113 39.8
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 4.7e-15 86.7 154 37.0
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 1.1e-08 65.5 172 29.1
Peaxi162Scf00684g00584 Petunia axillaris HOM05D005892 ORTHO05D007364 1.9e-08 64.7 109 47.7
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.6e-07 61.6 95 41.1


User provided reference genes

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