Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 0.0e+00 1134.0 596 100.0
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 0.0e+00 1116.7 596 98.5
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 0.0e+00 1114.8 596 98.5
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 4.1e-312 1074.7 596 94.5
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 9.3e-307 1056.2 595 92.1
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.6e-301 1038.1 582 93.0
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 9.3e-299 1029.6 581 92.3
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.4e-257 892.9 598 79.4
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 3.1e-254 881.7 618 76.1
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.0e-252 876.7 596 76.7
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 3.8e-252 874.8 600 78.0
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 6.5e-252 874.0 598 77.1
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 2.1e-250 869.0 597 77.1
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 6.1e-250 867.5 596 76.3
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 4.0e-249 864.8 592 76.9
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 2.6e-248 862.1 598 75.8
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 3.4e-248 861.7 597 76.4
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 7.5e-248 860.5 593 76.9
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 9.8e-248 860.1 597 76.4
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.8e-247 858.6 597 76.2
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 1.4e-246 856.3 597 75.7
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 7.0e-246 854.0 598 75.1
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 7.7e-245 850.5 592 75.5
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.0e-244 850.1 598 75.9
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 3.8e-244 848.2 597 75.4
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 2.5e-243 845.5 590 75.6
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 4.2e-243 844.7 593 75.2
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.2e-242 843.2 591 74.5
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 1.2e-242 843.2 597 74.0
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 4.7e-242 841.3 599 74.0
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 2.3e-241 839.0 590 75.4
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 2.3e-241 839.0 595 74.5
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.0e-241 838.6 588 74.7
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 4.0e-241 838.2 590 74.1
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.2e-240 836.6 591 75.0
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.5e-240 836.3 596 74.8
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 1.5e-240 836.3 591 74.1
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.5e-240 836.3 590 73.7
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 3.4e-240 835.1 588 74.0
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 5.7e-240 834.3 589 74.4
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 5.7e-240 834.3 599 74.6
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 7.5e-240 833.9 597 73.5
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.3e-239 833.2 589 74.5
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 1.3e-239 833.2 590 73.9
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 1.3e-239 833.2 511 84.3
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.3e-239 833.2 595 74.1
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.7e-239 832.8 590 73.6
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.7e-239 832.8 590 73.9
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 2.2e-239 832.4 590 73.2
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 2.2e-239 832.4 598 73.4
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 2.8e-239 832.0 596 72.3
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 2.8e-239 832.0 602 73.4
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 3.7e-239 831.6 590 73.7
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 6.3e-239 830.9 590 72.7
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.4e-238 829.7 590 72.7
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 1.4e-238 829.7 598 73.7
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 2.4e-238 828.9 602 74.4
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 3.1e-238 828.6 590 74.6
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.1e-238 828.2 597 73.2
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 4.1e-238 828.2 596 73.3
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 5.4e-238 827.8 598 73.6
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 5.4e-238 827.8 588 74.8
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 7.0e-238 827.4 590 73.1
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 7.0e-238 827.4 597 73.2
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 7.0e-238 827.4 597 73.5
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 7.0e-238 827.4 594 74.1
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 9.2e-238 827.0 589 73.7
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 1.2e-237 826.6 590 73.7
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.2e-237 826.6 596 72.0
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 2.0e-237 825.9 590 72.7
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 4.5e-237 824.7 591 74.6
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.0e-236 823.5 589 72.2
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.3e-236 823.2 597 72.7
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 2.9e-236 822.0 597 73.7
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 3.8e-236 821.6 596 73.5
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 5.0e-236 821.2 593 72.3
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.5e-235 819.7 600 73.5
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.5e-235 819.7 590 74.1
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 2.5e-235 818.9 598 73.9
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.5e-235 818.9 598 73.7
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.2e-234 816.6 594 72.1
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.6e-234 816.2 566 75.1
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.1e-234 815.8 589 73.3
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 2.8e-234 815.5 596 72.0
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 3.6e-234 815.1 596 72.8
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 4.7e-234 814.7 598 74.4
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 4.7e-234 814.7 562 76.5
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.1e-234 814.3 597 72.4
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 1.0e-233 813.5 591 72.6
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.0e-233 813.5 597 72.4
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 1.4e-233 813.1 596 72.5
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 4.0e-233 811.6 591 72.6
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.2e-232 810.1 589 72.2
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.6e-232 808.9 593 71.5
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.3e-231 806.6 591 71.6
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.7e-231 806.2 590 72.2
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 1.4e-230 803.1 565 74.7
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 3.2e-230 802.0 607 71.5
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.2e-230 802.0 586 72.2
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.6e-229 799.7 508 81.1
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.7e-229 798.9 572 74.1
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 3.5e-229 798.5 633 68.7
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 4.6e-229 798.1 593 71.3
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 1.0e-228 797.0 563 74.4
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 3.3e-227 792.0 702 62.8
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.6e-226 789.6 589 70.8
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 4.7e-226 788.1 593 69.6
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 9.2e-222 773.9 598 70.1
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.6e-221 773.1 699 62.8
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 1.0e-220 770.4 598 69.6
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 9.5e-219 763.8 598 69.2
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.8e-217 759.6 596 69.6
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 2.4e-214 749.2 566 69.3
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 8.1e-210 734.2 595 66.4
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 6.8e-209 731.1 584 66.3
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 1.4e-206 723.4 600 65.5
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 2.3e-204 716.1 593 65.3
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 2.5e-203 712.6 596 63.4
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 2.1e-197 693.0 488 74.8
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 4.3e-195 685.3 522 68.6
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.1e-189 666.4 597 62.1
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 5.1e-180 635.2 433 77.4
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.0e-175 620.9 449 72.4
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 3.5e-173 612.5 480 67.5
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 3.9e-172 609.0 507 67.7
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 5.3e-161 572.0 536 59.7
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 3.8e-151 539.3 390 74.1
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 3.9e-148 529.3 372 73.1
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.4e-140 504.2 588 48.8
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 4.5e-136 489.2 326 79.1
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.7e-131 472.2 400 66.5
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.4e-129 466.8 580 53.4
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.3e-118 429.9 314 72.6
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.9e-110 404.1 252 81.0
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 2.2e-106 390.6 509 45.8
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.1e-97 361.7 555 41.8
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.4e-92 344.0 231 79.2
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 1.5e-91 341.3 230 75.7
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.3e-78 296.6 177 83.1
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 4.5e-75 286.6 210 69.0
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.7e-64 250.8 239 55.6
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 1.1e-62 245.4 320 44.1
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 7.9e-48 196.1 111 85.6
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 2.4e-44 184.5 255 42.7
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 3.7e-37 160.6 129 65.9
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 2.6e-30 137.9 137 57.7
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.8e-23 115.2 106 58.5
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 2.0e-22 111.7 104 59.6
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 8.3e-21 106.3 250 37.2
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 7.7e-19 99.8 100 59.0
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 1.5e-17 95.5 80 62.5
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 4.2e-17 94.0 52 86.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 4.2e-17 94.0 52 86.5
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.5e-17 93.6 50 86.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 9.8e-14 82.8 65 69.2
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 3.5e-11 74.3 71 56.3
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 4.5e-11 73.9 71 56.3
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 5.9e-11 73.6 70 57.1
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.9e-11 73.6 60 63.3
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 3.8e-10 70.9 77 53.2
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.8e-08 64.7 30 90.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.8e-08 64.7 30 90.0
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 3.6e-08 64.3 57 50.9
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 8.9e-07 59.7 218 28.9
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 8.9e-07 59.7 76 52.6
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 5.7e-06 57.0 57 43.9


User provided reference genes

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