Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006836 Solanum tuberosum HOM05D007133 ORTHO05D008954 7.2e-44 180.3 95 100.0
Sopen01g034810 Solanum pennellii HOM05D007133 ORTHO05D008954 2.6e-41 171.8 93 96.8
Solyc01g087880.3 Solanum lycopersicum HOM05D007133 ORTHO05D008954 2.2e-40 168.7 93 95.7
Nitab4.5_0008942g0020 Nicotiana tabacum HOM05D007133 ORTHO05D008954 1.1e-31 139.8 83 90.4
Peaxi162Scf01270g00118 Petunia axillaris HOM05D007133 ORTHO05D008954 2.9e-29 131.7 94 80.9
Nitab4.5_0001244g0090 Nicotiana tabacum HOM05D007133 ORTHO05D008954 2.1e-27 125.6 109 68.8
CiPaw.14G003100 Carya illinoinensis HOM05D007133 ORTHO05D008954 9.7e-25 116.7 83 75.9
Gohir.A12G100700 Gossypium hirsutum HOM05D007133 ORTHO05D008954 1.7e-24 115.9 83 73.5
Gohir.D12G103551 Gossypium hirsutum HOM05D007133 ORTHO05D008954 1.7e-24 115.9 83 73.5
Gorai.008G112700 Gossypium raimondii HOM05D007133 ORTHO05D008954 1.7e-24 115.9 83 73.5
Manes.10G136200 Manihot esculenta HOM05D007133 ORTHO05D008954 1.7e-24 115.9 96 69.8
arahy.Tifrunner.gnm1.ann1.1B9UE2 Arachis hypogaea HOM05D007133 ORTHO05D008954 2.2e-24 115.5 94 69.1
arahy.Tifrunner.gnm1.ann1.PZX0PK Arachis hypogaea HOM05D007133 ORTHO05D008954 2.2e-24 115.5 94 69.1
Cc02_g28790 Coffea canephora HOM05D007133 ORTHO05D008954 2.8e-24 115.2 84 76.2
Duzib268G0834 Durio zibethinus HOM05D007133 ORTHO05D008954 2.8e-24 115.2 83 73.5
Thecc.01G406600 Theobroma cacao HOM05D007133 ORTHO05D008954 4.8e-24 114.4 83 72.3
Ciclev10033166m.g Citrus clementina HOM05D007133 ORTHO05D008954 6.3e-24 114.0 83 75.9
COL.COLO4_12337 Corchorus olitorius HOM05D007133 ORTHO05D008954 6.3e-24 114.0 95 67.4
Phvul.001G156100 Phaseolus vulgaris HOM05D007133 ORTHO05D008954 8.2e-24 113.6 79 75.9
Nn7g36332 Nelumbo nucifera HOM05D007133 ORTHO05D008954 1.4e-23 112.8 94 68.1
Phvul.011G010800 Phaseolus vulgaris HOM05D007133 ORTHO05D008954 1.4e-23 112.8 79 75.9
ECA248G0684 Erigeron canadensis HOM05D007133 ORTHO05D008954 5.3e-23 110.9 85 70.6
Glyma.09G226900 Glycine max HOM05D007133 ORTHO05D008954 5.3e-23 110.9 85 69.4
Glyma.12G009900 Glycine max HOM05D007133 ORTHO05D008954 5.3e-23 110.9 85 69.4
Actinidia21538 Actinidia chinensis HOM05D007133 ORTHO05D008954 9.1e-23 110.2 83 73.5
Ah.10g038590 Amaranthus hybridus HOM05D007133 ORTHO05D008954 9.1e-23 110.2 90 67.8
CsaV3_7G030730 Cucumis sativus L. HOM05D007133 ORTHO05D008954 9.1e-23 110.2 90 66.7
Sc10g0000360 Simmondsia chinensis HOM05D007133 ORTHO05D008954 1.6e-22 109.4 95 65.3
Dinv03122 Davidia involucrata HOM05D007133 ORTHO05D008954 2.0e-22 109.0 83 72.3
Dinv09308 Davidia involucrata HOM05D007133 ORTHO05D008954 2.0e-22 109.0 83 72.3
Eucgr.G03322 Eucalyptus grandis HOM05D007133 ORTHO05D008954 2.0e-22 109.0 83 69.9
Oeu027371.1 Olea europaea HOM05D007133 ORTHO05D008954 2.0e-22 109.0 83 71.1
Prupe.2G024400 Prunus persica HOM05D007133 ORTHO05D008954 2.0e-22 109.0 82 69.5
CANSAT80G0888 Cannabis sativa HOM05D007133 ORTHO05D008954 2.7e-22 108.6 88 68.2
EL10Ac2g04374 Beta vulgaris HOM05D007133 ORTHO05D008954 3.5e-22 108.2 89 66.3
Sabra09G0041600 Salix brachista HOM05D007133 ORTHO05D008954 3.5e-22 108.2 95 65.3
vmacro21138 Vaccinium macrocarpon HOM05D007133 ORTHO05D008954 3.5e-22 108.2 83 71.1
MD07G1024700 Malus domestica HOM05D007133 ORTHO05D008954 5.9e-22 107.5 82 68.3
Hund26515 Selenicereus undatus HOM05D007133 ORTHO05D008954 5.9e-22 107.5 83 71.1
TPR.G30180 Trifolium pratense HOM05D007133 ORTHO05D008954 5.9e-22 107.5 84 70.2
TWI53G1532 Tripterygium wilfordii HOM05D007133 ORTHO05D008954 5.9e-22 107.5 90 65.6
Aa31LG10G7080 Aethionema arabicum HOM05D007133 ORTHO05D008954 7.7e-22 107.1 89 67.4
Medtr0512s0010 Medicago truncatula HOM05D007133 ORTHO05D008954 7.7e-22 107.1 84 70.2
Atru.chr11.2512 Acer truncatum HOM05D007133 ORTHO05D008954 1.0e-21 106.7 85 69.4
Lsat_1_v5_gn_1_104961 Lactuca sativa HOM05D007133 ORTHO05D008954 1.0e-21 106.7 85 67.1
MD02G1300200 Malus domestica HOM05D007133 ORTHO05D008954 1.0e-21 106.7 82 68.3
Sed0015487 Sechium edule HOM05D007133 ORTHO05D008954 1.0e-21 106.7 95 65.3
THA.LOC104817576 Tarenaya hassleriana HOM05D007133 ORTHO05D008954 1.0e-21 106.7 84 67.9
CDE08G1151 Ceratophyllum demersum HOM05D007133 ORTHO05D008954 1.3e-21 106.3 84 67.9
AUR62023097 Chenopodium quinoa HOM05D007133 ORTHO05D008954 1.3e-21 106.3 87 69.0
Lalb_Chr04g0263851 Lupinus albus HOM05D007133 ORTHO05D008954 1.3e-21 106.3 83 68.7
Potri.001G262000 Populus trichocarpa HOM05D007133 ORTHO05D008954 1.3e-21 106.3 96 64.6
Zm00001eb332910 Zea mays HOM05D007133 ORTHO05D008954 1.3e-21 106.3 87 67.8
HanXRQChr06g0179721 Helianthus annuus HOM05D007133 ORTHO05D008954 1.7e-21 105.9 85 67.1
TAR633G1269 Trochodendron aralioides HOM05D007133 ORTHO05D008954 1.7e-21 105.9 85 67.1
Lalb_Chr25g0282521 Lupinus albus HOM05D007133 ORTHO05D008954 2.2e-21 105.5 83 68.7
SGA_v2.0_scaffold5G02955 Striga asiatica HOM05D007133 ORTHO05D008954 2.2e-21 105.5 83 68.7
TWI09G1631 Tripterygium wilfordii HOM05D007133 ORTHO05D008954 2.2e-21 105.5 91 62.6
FvH4_7g01820 Fragaria vesca HOM05D007133 ORTHO05D008954 2.9e-21 105.1 94 63.8
FAN01G1667 Fragaria x ananassa HOM05D007133 ORTHO05D008954 2.9e-21 105.1 94 63.8
Potri.009G056800 Populus trichocarpa HOM05D007133 ORTHO05D008954 2.9e-21 105.1 95 64.2
CSS0001581 Camellia sinensis var. sinensis HOM05D007133 ORTHO05D008954 3.8e-21 104.8 83 69.9
GSVIVG01032212001 Vitis vinifera HOM05D007133 ORTHO05D008954 3.8e-21 104.8 96 63.5
Carub.0005s1836 Capsella rubella HOM05D007133 ORTHO05D008954 8.5e-21 103.6 89 62.9
Ca_26645_v3 Cicer arietinum L. HOM05D007133 ORTHO05D008954 8.5e-21 103.6 96 64.6
PGR031G3629 Punica granatum HOM05D007133 ORTHO05D008954 8.5e-21 103.6 83 66.3
RcHm_v2.0_Chr1g0318451 Rosa chinensis HOM05D007133 ORTHO05D008954 1.1e-20 103.2 84 67.9
BcaB01g00452 Brassica carinata HOM05D007133 ORTHO05D008954 1.5e-20 102.8 89 64.0
C08p27290 Brassica napus HOM05D007133 ORTHO05D008954 1.5e-20 102.8 89 64.0
BolC8t50346H Brassica oleracea HOM05D007133 ORTHO05D008954 1.5e-20 102.8 89 64.0
AT3G52040 Arabidopsis thaliana HOM05D007133 ORTHO05D008954 1.9e-20 102.4 94 61.7
A09p45100 Brassica napus HOM05D007133 ORTHO05D008954 2.5e-20 102.1 89 64.0
BraA09t39971Z Brassica rapa HOM05D007133 ORTHO05D008954 2.5e-20 102.1 89 64.0
AL5G32580 Arabidopsis lyrata HOM05D007133 ORTHO05D008954 3.2e-20 101.7 90 64.4
MELO3C023583.2 Cucumis melo HOM05D007133 ORTHO05D008954 3.2e-20 101.7 104 57.7
Aqoxy1G00141 Aquilegia oxysepala HOM05D007133 ORTHO05D008954 5.5e-20 100.9 83 67.5
Migut.N01798 Erythranthe guttata HOM05D007133 ORTHO05D008954 5.5e-20 100.9 83 65.1
Thhalv10010861m.g Eutrema salsugineum HOM05D007133 ORTHO05D008954 7.2e-20 100.5 89 62.9
Lj3g0009786 Lotus japonicus HOM05D007133 ORTHO05D008954 7.2e-20 100.5 83 66.3
CARHR161670 Cardamine hirsuta HOM05D007133 ORTHO05D008954 1.2e-19 99.8 95 58.9
BcaC06g33021 Brassica carinata HOM05D007133 ORTHO05D008954 2.1e-19 99.0 89 61.8
PSO063G0957 Papaver somniferum HOM05D007133 ORTHO05D008954 2.1e-19 99.0 84 66.7
C07p46740 Brassica napus HOM05D007133 ORTHO05D008954 2.7e-19 98.6 89 61.8
BolC7t45192H Brassica oleracea HOM05D007133 ORTHO05D008954 2.7e-19 98.6 89 61.8
PSO170G5856 Papaver somniferum HOM05D007133 ORTHO05D008954 2.7e-19 98.6 84 66.7
BcaC06g33378 Brassica carinata HOM05D007133 ORTHO05D008954 3.6e-19 98.2 89 61.8
BraA03t13967Z Brassica rapa HOM05D007133 ORTHO05D008954 2.3e-18 95.5 89 60.7
unitig_8.g3622 Utricularia gibba HOM05D007133 ORTHO05D008954 2.3e-18 95.5 71 70.4
A03p48620 Brassica napus HOM05D007133 ORTHO05D008954 4.0e-18 94.7 90 58.9
ClCG09G004410 Citrullus lanatus HOM05D007133 ORTHO05D008954 8.8e-18 93.6 114 50.0
FAN10G0509 Fragaria x ananassa HOM05D007133 ORTHO05D008954 3.4e-17 91.7 86 61.6
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 8.3e-16 87.0 83 67.5
Eucgr.G03325 Eucalyptus grandis HOM05D007133 ORTHO05D008954 1.4e-15 86.3 82 58.5
SalBow6G3002 Salvia bowleyana HOM05D007133 ORTHO05D008954 3.1e-15 85.1 118 46.6
Pp3c9_17680 Physcomitrium patens HOM05D007133 ORTHO05D008954 4.1e-15 84.7 94 51.1
Haze_03143 Corylus avellana HOM05D007133 ORTHO05D008954 5.4e-15 84.3 141 42.6
Haze_03146 Corylus avellana HOM05D007133 ORTHO05D008954 5.4e-15 84.3 141 42.6
Medtr4g101060 Medicago truncatula HOM05D007133 ORTHO05D008954 2.3e-13 79.0 54 72.2
AagrBONN_evm.TU.Sc2ySwM_344.2738 Anthoceros agrestis HOM05D007133 ORTHO05D008954 3.8e-13 78.2 90 48.9
Mapoly0049s0103 Marchantia polymorpha HOM05D007133 ORTHO05D008954 6.5e-13 77.4 94 47.9
Dinv09304 Davidia involucrata HOM05D007133 ORTHO05D008954 3.2e-12 75.1 82 56.1
HPP92_001020 Vanilla planifolia HOM05D007133 ORTHO05D008954 1.6e-11 72.8 65 63.1
MBI19_g09240_MAGBIO Magnolia biondii HOM05D007133 ORTHO05D008954 2.3e-10 68.9 50 74.0
Rhsim01G0126300 Rhododendron simsii HOM05D007133 ORTHO05D008954 3.0e-10 68.6 48 77.1
QL04p010011 Quercus lobata HOM05D007133 ORTHO05D008954 2.6e-09 65.5 48 77.1
Duzib133G0944 Durio zibethinus HOM05D007133 ORTHO05D008954 4.4e-09 64.7 48 70.8
Hma1.2p1_0685F.1_g203210 Hydrangea macrophylla HOM05D007133 ORTHO05D008954 4.4e-09 64.7 49 73.5
Psat7g197280 Pisum sativum HOM05D007133 ORTHO05D008954 5.7e-09 64.3 48 70.8
Os01g0271700 Oryza sativa ssp. japonica HOM05D007133 ORTHO05D008954 2.2e-08 62.4 48 68.8


User provided reference genes

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