Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.6e-41 172.2 80 100.0
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 2.8e-33 144.8 81 86.4
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 6.9e-24 113.6 76 71.1
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 7.7e-23 110.2 82 72.0
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 6.3e-17 90.5 77 59.7
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 2.4e-16 88.6 43 88.4
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 1.5e-13 79.3 72 52.8
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 1.5e-13 79.3 72 52.8
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 1.5e-13 79.3 72 52.8
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.7e-12 75.1 49 69.4
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.8e-11 72.4 49 67.3
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 4.0e-11 71.2 66 54.5
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.2e-11 70.9 64 53.1
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.1e-10 69.7 74 47.3
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.1e-10 69.7 74 47.3
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.1e-10 69.7 74 47.3
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 1.1e-10 69.7 68 50.0
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.5e-10 69.3 42 71.4
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.5e-10 69.3 70 47.1
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 1.5e-10 69.3 51 60.8
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 1.5e-10 69.3 66 50.0
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 2.0e-10 68.9 67 49.3
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.6e-10 68.6 70 47.1
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.6e-10 68.6 59 55.9
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 2.6e-10 68.6 59 55.9
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 2.6e-10 68.6 69 52.2
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 3.3e-10 68.2 74 45.9
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 4.4e-10 67.8 34 79.4
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 5.7e-10 67.4 75 48.0
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 7.5e-10 67.0 60 55.0
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 7.5e-10 67.0 68 51.5
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 9.7e-10 66.6 37 70.3
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.7e-10 66.6 69 55.1
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 1.3e-09 66.2 56 53.6
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.3e-09 66.2 74 45.9
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 1.3e-09 66.2 68 47.1
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.3e-09 66.2 63 47.6
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 1.3e-09 66.2 78 48.7
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.7e-09 65.9 36 77.8
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.7e-09 65.9 36 77.8
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.7e-09 65.9 36 77.8
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 2.2e-09 65.5 50 60.0
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 2.2e-09 65.5 33 78.8
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 2.2e-09 65.5 33 78.8
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 2.8e-09 65.1 60 56.7
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 2.8e-09 65.1 71 46.5
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 2.8e-09 65.1 50 52.0
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.8e-09 65.1 55 54.5
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.8e-09 65.1 55 54.5
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.8e-09 65.1 61 49.2
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 2.8e-09 65.1 60 48.3
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 3.7e-09 64.7 75 45.3
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 3.7e-09 64.7 39 64.1
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 3.7e-09 64.7 39 64.1
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 3.7e-09 64.7 39 66.7
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 3.7e-09 64.7 39 66.7
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 4.8e-09 64.3 36 72.2
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 4.8e-09 64.3 47 59.6
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 4.8e-09 64.3 48 60.4
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 6.3e-09 63.9 41 65.9
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 6.3e-09 63.9 45 60.0
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 6.3e-09 63.9 70 48.6
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 6.3e-09 63.9 46 58.7
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 6.3e-09 63.9 67 47.8
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 6.3e-09 63.9 67 47.8
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 6.3e-09 63.9 34 67.6
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 8.2e-09 63.5 32 78.1
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 8.2e-09 63.5 37 64.9
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 8.2e-09 63.5 32 81.2
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 8.2e-09 63.5 75 46.7
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.1e-08 63.2 32 78.1
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 1.1e-08 63.2 42 64.3
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.1e-08 63.2 34 67.6
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 1.4e-08 62.8 33 72.7
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.4e-08 62.8 34 67.6
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 1.4e-08 62.8 34 67.6
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 1.8e-08 62.4 69 47.8
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.8e-08 62.4 51 54.9
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.8e-08 62.4 36 75.0
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 1.8e-08 62.4 45 57.8
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.8e-08 62.4 36 69.4
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.8e-08 62.4 36 69.4
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.8e-08 62.4 36 69.4
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 1.8e-08 62.4 36 69.4
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 1.8e-08 62.4 66 45.5
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.4e-08 62.0 70 41.4
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 2.4e-08 62.0 66 48.5
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.4e-08 62.0 47 55.3
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 2.4e-08 62.0 32 78.1
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 3.1e-08 61.6 52 51.9
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 3.1e-08 61.6 52 53.8
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.1e-08 61.6 67 52.2
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 4.1e-08 61.2 47 53.2
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 4.1e-08 61.2 32 75.0
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 4.1e-08 61.2 49 53.1
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 4.1e-08 61.2 64 50.0
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.1e-08 61.2 32 71.9
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.1e-08 61.2 37 64.9
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.1e-08 61.2 33 72.7
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 4.1e-08 61.2 32 71.9
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.3e-08 60.8 67 43.3
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 5.3e-08 60.8 61 47.5
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 5.3e-08 60.8 31 80.6
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 9.1e-08 60.1 31 74.2
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 1.2e-07 59.7 39 61.5
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.6e-07 59.3 42 57.1
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.6e-07 59.3 31 74.2
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.6e-07 59.3 69 49.3
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.6e-07 59.3 52 51.9
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.0e-07 58.9 32 75.0
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 2.0e-07 58.9 64 46.9
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 2.0e-07 58.9 33 69.7
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 76.7
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 2.7e-07 58.5 30 80.0
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 2.7e-07 58.5 31 74.2
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 3.5e-07 58.2 30 76.7
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 3.5e-07 58.2 30 76.7
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 3.5e-07 58.2 30 76.7
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 3.5e-07 58.2 30 76.7
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 3.5e-07 58.2 34 67.6
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 3.5e-07 58.2 32 71.9
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.5e-07 57.8 30 73.3
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 5.9e-07 57.4 72 45.8
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 5.9e-07 57.4 30 73.3
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 5.9e-07 57.4 30 73.3
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 5.9e-07 57.4 30 80.0
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 5.9e-07 57.4 30 80.0
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 5.9e-07 57.4 30 73.3
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 5.9e-07 57.4 30 73.3
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 7.7e-07 57.0 31 74.2
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 7.7e-07 57.0 74 45.9
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 7.7e-07 57.0 32 68.8
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 7.7e-07 57.0 53 50.9
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 7.7e-07 57.0 48 54.2
Solyc08g044540.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 7.7e-07 57.0 34 70.6
Sopen08g013660 Solanum pennellii HOM05D003654 ORTHO05D004176 7.7e-07 57.0 34 70.6
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.0e-06 56.6 57 47.4
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.0e-06 56.6 29 79.3
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 1.0e-06 56.6 30 73.3
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.3e-06 56.2 53 54.7
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 1.3e-06 56.2 46 58.7
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 1.3e-06 56.2 66 43.9
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 1.7e-06 55.8 30 70.0
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.7e-06 55.8 30 70.0
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 1.7e-06 55.8 30 73.3
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 1.7e-06 55.8 30 70.0
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.7e-06 55.8 29 75.9
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 1.7e-06 55.8 33 66.7
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 1.7e-06 55.8 33 63.6
CAN.G1258.3 Capsicum annuum HOM05D003654 ORTHO05D004176 2.2e-06 55.5 34 67.6
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 2.2e-06 55.5 68 44.1
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 2.2e-06 55.5 36 63.9
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 2.2e-06 55.5 30 76.7
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.2e-06 55.5 34 67.6
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.2e-06 55.5 34 67.6
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.9e-06 55.1 32 68.8
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 2.9e-06 55.1 31 67.7
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 5.0e-06 54.3 31 71.0
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 6.5e-06 53.9 30 66.7
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 6.5e-06 53.9 71 43.7
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 6.5e-06 53.9 67 40.3
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 6.5e-06 53.9 67 40.3
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 6.5e-06 53.9 30 73.3
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.5e-06 53.5 51 45.1
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 8.5e-06 53.5 30 70.0


User provided reference genes

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