Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 5.0e-34 147.1 71 100.0
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 8.6e-18 93.2 43 93.0
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 8.6e-18 93.2 43 93.0
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 9.5e-17 89.7 43 88.4
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.7e-13 77.8 43 79.1
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 9.2e-12 73.2 43 62.8
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 9.2e-12 73.2 42 73.8
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 1.2e-11 72.8 42 76.2
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.2e-11 72.8 42 69.0
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 1.2e-11 72.8 42 69.0
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.2e-11 72.8 42 69.0
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 1.6e-11 72.4 46 69.6
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 1.6e-11 72.4 43 72.1
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.1e-11 72.0 49 59.2
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 2.1e-11 72.0 41 73.2
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 2.7e-11 71.6 41 65.9
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.7e-11 71.6 55 63.6
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 2.7e-11 71.6 55 63.6
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 2.7e-11 71.6 56 62.5
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.5e-11 71.2 44 63.6
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.5e-11 71.2 44 63.6
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 3.5e-11 71.2 48 60.4
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 4.6e-11 70.9 44 70.5
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.6e-11 70.9 54 55.6
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 4.6e-11 70.9 49 57.1
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 4.6e-11 70.9 36 75.0
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 6.0e-11 70.5 41 65.9
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 6.0e-11 70.5 43 69.8
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 7.8e-11 70.1 48 66.7
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.0e-10 69.7 43 67.4
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.0e-10 69.7 40 77.5
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 1.3e-10 69.3 44 61.4
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.3e-10 69.3 41 65.9
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.3e-10 69.3 34 82.4
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 1.7e-10 68.9 34 79.4
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 1.7e-10 68.9 34 79.4
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 1.7e-10 68.9 34 79.4
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.7e-10 68.9 41 70.7
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 1.7e-10 68.9 43 60.5
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 1.7e-10 68.9 34 79.4
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 1.7e-10 68.9 41 73.2
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 1.7e-10 68.9 33 81.8
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 2.3e-10 68.6 39 66.7
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 3.0e-10 68.2 46 60.9
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 3.0e-10 68.2 39 69.2
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 3.0e-10 68.2 39 69.2
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 3.0e-10 68.2 34 79.4
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 3.0e-10 68.2 41 65.9
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 3.9e-10 67.8 45 66.7
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.9e-10 67.8 43 60.5
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 3.9e-10 67.8 34 76.5
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 5.1e-10 67.4 41 65.9
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 5.1e-10 67.4 41 68.3
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 5.1e-10 67.4 34 76.5
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 5.1e-10 67.4 41 68.3
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 6.6e-10 67.0 32 84.4
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 6.6e-10 67.0 39 64.1
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 6.6e-10 67.0 34 76.5
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 8.6e-10 66.6 41 63.4
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 8.6e-10 66.6 42 64.3
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 8.6e-10 66.6 36 80.6
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 8.6e-10 66.6 36 80.6
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 8.6e-10 66.6 37 70.3
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.1e-09 66.2 41 68.3
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 1.5e-09 65.9 36 75.0
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 1.5e-09 65.9 37 78.4
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 1.5e-09 65.9 34 70.6
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.5e-09 65.9 45 55.6
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.9e-09 65.5 32 81.2
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 1.9e-09 65.5 32 81.2
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 1.9e-09 65.5 44 65.9
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 2.5e-09 65.1 32 81.2
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 2.5e-09 65.1 39 66.7
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 2.5e-09 65.1 45 55.6
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 2.5e-09 65.1 45 55.6
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 3.3e-09 64.7 40 65.0
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.3e-09 64.7 32 78.1
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.3e-09 64.7 49 53.1
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 3.3e-09 64.7 33 75.8
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 3.3e-09 64.7 32 78.1
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 4.3e-09 64.3 34 73.5
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 4.3e-09 64.3 34 73.5
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 4.3e-09 64.3 34 73.5
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 4.3e-09 64.3 34 73.5
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 4.3e-09 64.3 34 73.5
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 4.3e-09 64.3 34 73.5
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 4.3e-09 64.3 41 68.3
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.3e-09 64.3 36 69.4
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.3e-09 64.3 36 69.4
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.3e-09 64.3 36 69.4
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.3e-09 64.3 36 69.4
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 4.3e-09 64.3 43 60.5
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 4.3e-09 64.3 43 62.8
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 5.6e-09 63.9 46 60.9
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 5.6e-09 63.9 32 78.1
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 7.3e-09 63.5 31 80.6
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 7.3e-09 63.5 39 61.5
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 7.3e-09 63.5 39 66.7
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 9.5e-09 63.2 32 75.0
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.5e-09 63.2 37 67.6
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.5e-09 63.2 33 72.7
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 1.2e-08 62.8 32 71.9
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.2e-08 62.8 31 77.4
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 1.2e-08 62.8 43 60.5
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 1.2e-08 62.8 31 80.6
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 1.6e-08 62.4 30 83.3
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 2.1e-08 62.0 41 58.5
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 2.1e-08 62.0 31 77.4
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 2.8e-08 61.6 30 83.3
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 2.8e-08 61.6 30 83.3
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 2.8e-08 61.6 30 83.3
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 3.6e-08 61.2 30 76.7
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 4.7e-08 60.8 30 80.0
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 4.7e-08 60.8 30 80.0
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 4.7e-08 60.8 32 75.0
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 4.7e-08 60.8 30 76.7
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 4.7e-08 60.8 30 76.7
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 4.7e-08 60.8 33 69.7
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 6.2e-08 60.5 30 80.0
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 6.2e-08 60.5 34 70.6
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.2e-08 60.5 34 67.6
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 8.1e-08 60.1 34 70.6
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 8.1e-08 60.1 30 80.0
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 8.1e-08 60.1 32 75.0
Peaxi162Scf00071g01115 Petunia axillaris HOM05D003654 ORTHO05D004176 8.1e-08 60.1 56 50.0
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 8.1e-08 60.1 45 60.0
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 1.1e-07 59.7 46 58.7
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.1e-07 59.7 30 76.7
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 1.1e-07 59.7 54 51.9
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.1e-07 59.7 34 73.5
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.1e-07 59.7 34 67.6
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 1.4e-07 59.3 30 76.7
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 1.4e-07 59.3 30 80.0
Peaxi162Scf00138g00032 Petunia axillaris HOM05D003654 ORTHO05D004176 1.4e-07 59.3 52 50.0
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.8e-07 58.9 52 42.3
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.8e-07 58.9 32 68.8
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 2.4e-07 58.5 33 72.7
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 2.4e-07 58.5 30 73.3
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 3.1e-07 58.2 30 76.7
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 3.1e-07 58.2 30 73.3
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.1e-07 58.2 58 48.3
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 3.1e-07 58.2 29 79.3
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 4.0e-07 57.8 30 73.3
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 4.0e-07 57.8 33 66.7
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 4.0e-07 57.8 30 76.7
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 4.0e-07 57.8 33 66.7
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 5.2e-07 57.4 32 71.9
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 5.2e-07 57.4 36 66.7
Migut.J01761 Erythranthe guttata HOM05D003654 ORTHO05D004176 5.2e-07 57.4 30 80.0
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 5.2e-07 57.4 36 69.4
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 5.2e-07 57.4 29 75.9
Solyc08g044540.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 5.2e-07 57.4 34 67.6
Sopen08g013660 Solanum pennellii HOM05D003654 ORTHO05D004176 5.2e-07 57.4 34 67.6
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 6.8e-07 57.0 49 44.9
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 6.8e-07 57.0 49 44.9
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 6.8e-07 57.0 34 67.6
Nitab4.5_0005680g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 6.8e-07 57.0 34 67.6
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 6.8e-07 57.0 31 67.7
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 6.8e-07 57.0 41 56.1
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 6.8e-07 57.0 30 73.3
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 8.9e-07 56.6 31 74.2
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 8.9e-07 56.6 40 65.0
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.2e-06 56.2 34 70.6
CAN.G1258.3 Capsicum annuum HOM05D003654 ORTHO05D004176 1.5e-06 55.8 34 64.7
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 1.5e-06 55.8 30 70.0
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 1.5e-06 55.8 30 73.3
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 1.5e-06 55.8 30 70.0
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.0e-06 55.5 30 66.7
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.4e-06 54.7 76 46.1
PGSC0003DMG400006887 Solanum tuberosum HOM05D003654 ORTHO05D396543 5.8e-06 53.9 74 50.0
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 7.6e-06 53.5 64 39.1
Potri.012G032500 Populus trichocarpa HOM05D003654 ORTHO05D004176 9.9e-06 53.1 35 65.7


User provided reference genes

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