Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006635 Solanum tuberosum HOM05D006111 ORTHO05D007683 2.8e-205 718.4 365 100.0
Sopen02g001570 Solanum pennellii HOM05D006111 ORTHO05D007683 1.5e-190 669.5 364 93.4
Solyc02g005200.4 Solanum lycopersicum HOM05D006111 ORTHO05D007683 5.7e-190 667.5 364 93.1
CAN.G666.14 Capsicum annuum HOM05D006111 ORTHO05D007683 5.0e-186 654.4 367 88.8
Nitab4.5_0001001g0030 Nicotiana tabacum HOM05D006111 ORTHO05D007683 3.0e-175 618.6 366 86.6
Peaxi162Scf00818g00127 Petunia axillaris HOM05D006111 ORTHO05D007683 2.5e-169 599.0 380 80.0
Nitab4.5_0000139g0200 Nicotiana tabacum HOM05D006111 ORTHO05D007683 8.0e-160 567.4 368 80.7
Eucgr.J01211 Eucalyptus grandis HOM05D006111 ORTHO05D007683 1.4e-159 566.6 377 74.5
Dinv43431 Davidia involucrata HOM05D006111 ORTHO05D007683 8.9e-159 563.9 372 75.3
QL04p008312 Quercus lobata HOM05D006111 ORTHO05D007683 3.4e-158 562.0 373 76.4
RcHm_v2.0_Chr1g0316521 Rosa chinensis HOM05D006111 ORTHO05D007683 4.9e-157 558.1 366 74.6
CSS0012829 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 1.4e-156 556.6 368 74.7
CSS0034733 Camellia sinensis var. sinensis HOM05D006111 ORTHO05D007683 1.4e-156 556.6 368 74.7
Prupe.2G015400 Prunus persica HOM05D006111 ORTHO05D007683 1.8e-156 556.2 373 74.0
MD02G1308600 Malus domestica HOM05D006111 ORTHO05D007683 7.0e-156 554.3 376 73.7
SalBow6G4116 Salvia bowleyana HOM05D006111 ORTHO05D007683 7.0e-156 554.3 369 73.7
MD07G1013000 Malus domestica HOM05D006111 ORTHO05D007683 9.2e-156 553.9 373 74.3
SalBow6G6970 Salvia bowleyana HOM05D006111 ORTHO05D007683 2.0e-155 552.7 369 73.4
Duzib268G0420 Durio zibethinus HOM05D006111 ORTHO05D007683 3.5e-155 552.0 366 73.8
Migut.N01606 Erythranthe guttata HOM05D006111 ORTHO05D007683 3.5e-155 552.0 367 73.0
Oeu014586.1 Olea europaea HOM05D006111 ORTHO05D007683 4.5e-155 551.6 369 74.8
PGR044G0412 Punica granatum HOM05D006111 ORTHO05D007683 7.8e-155 550.8 379 72.6
FvH4_7g01190 Fragaria vesca HOM05D006111 ORTHO05D007683 1.0e-154 550.4 368 73.9
FAN06G2641 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.0e-154 550.4 368 73.9
EL10Ac2g04342 Beta vulgaris HOM05D006111 ORTHO05D007683 2.3e-154 549.3 366 74.3
CANSAT80G0546 Cannabis sativa HOM05D006111 ORTHO05D007683 2.3e-154 549.3 303 84.5
MSTRG.17026 Avicennia marina HOM05D006111 ORTHO05D007683 8.6e-154 547.4 371 72.2
Thecc.01G409400 Theobroma cacao HOM05D006111 ORTHO05D007683 1.1e-153 547.0 368 73.1
Manes.10G140800 Manihot esculenta HOM05D006111 ORTHO05D007683 1.5e-153 546.6 330 79.7
Potri.009G059600 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.5e-153 546.6 366 73.0
FAN03G2464 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.9e-153 546.2 370 73.8
Potri.009G059800 Populus trichocarpa HOM05D006111 ORTHO05D007683 1.9e-153 546.2 368 72.6
Aqoxy1G00288 Aquilegia oxysepala HOM05D006111 ORTHO05D007683 2.5e-153 545.8 372 72.8
CiPaw.13G006200 Carya illinoinensis HOM05D006111 ORTHO05D007683 4.3e-153 545.0 365 73.4
Nn7g36241 Nelumbo nucifera HOM05D006111 ORTHO05D007683 4.3e-153 545.0 379 72.8
Ciclev10031806m.g Citrus clementina HOM05D006111 ORTHO05D007683 5.6e-153 544.7 374 71.7
FAN10G2658 Fragaria x ananassa HOM05D006111 ORTHO05D007683 5.6e-153 544.7 370 73.5
Gorai.004G171600 Gossypium raimondii HOM05D006111 ORTHO05D007683 7.3e-153 544.3 372 71.5
GSVIVG01032129001 Vitis vinifera HOM05D006111 ORTHO05D007683 7.3e-153 544.3 297 86.5
Cc01_g06700 Coffea canephora HOM05D006111 ORTHO05D007683 9.5e-153 543.9 357 74.2
Gohir.D08G164600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 9.5e-153 543.9 324 78.7
FAN01G0043 Fragaria x ananassa HOM05D006111 ORTHO05D007683 1.6e-152 543.1 370 73.2
Atru.chr11.2607 Acer truncatum HOM05D006111 ORTHO05D007683 3.6e-152 542.0 364 73.9
SGA_v2.0_scaffold24G10670 Striga asiatica HOM05D006111 ORTHO05D007683 1.8e-151 539.7 369 73.4
CsaV3_7G030960 Cucumis sativus L. HOM05D006111 ORTHO05D007683 4.0e-151 538.5 336 75.9
COL.COLO4_04864 Corchorus olitorius HOM05D006111 ORTHO05D007683 5.2e-151 538.1 327 80.1
Ah.10g038770 Amaranthus hybridus HOM05D006111 ORTHO05D007683 8.9e-151 537.3 367 72.8
TAR623G0061 Trochodendron aralioides HOM05D006111 ORTHO05D007683 1.2e-150 537.0 371 72.0
MBI02_g05669_MAGBIO Magnolia biondii HOM05D006111 ORTHO05D007683 1.5e-150 536.6 376 71.5
ClCG09G004060 Citrullus lanatus HOM05D006111 ORTHO05D007683 1.3e-149 533.5 324 77.8
TWI09G1338 Tripterygium wilfordii HOM05D006111 ORTHO05D007683 1.3e-149 533.5 332 76.8
arahy.Tifrunner.gnm1.ann1.M31XXH Arachis hypogaea HOM05D006111 ORTHO05D007683 2.2e-149 532.7 360 74.7
arahy.Tifrunner.gnm1.ann1.YZE6TL Arachis hypogaea HOM05D006111 ORTHO05D007683 2.2e-149 532.7 360 74.7
Sc10g0000130 Simmondsia chinensis HOM05D006111 ORTHO05D007683 2.2e-149 532.7 372 71.0
Hund21484 Selenicereus undatus HOM05D006111 ORTHO05D007683 2.9e-149 532.3 368 71.5
THA.LOC104819080 Tarenaya hassleriana HOM05D006111 ORTHO05D007683 1.9e-148 529.6 339 74.3
DCAR_015173 Daucus carota HOM05D006111 ORTHO05D007683 2.4e-148 529.3 371 70.4
CARHR082760 Cardamine hirsuta HOM05D006111 ORTHO05D007683 3.2e-148 528.9 355 73.0
HanXRQChr09g0260521 Helianthus annuus HOM05D006111 ORTHO05D007683 5.4e-148 528.1 363 70.8
Thhalv10020943m.g Eutrema salsugineum HOM05D006111 ORTHO05D007683 9.2e-148 527.3 303 82.2
Sp3g06920 Schrenkiella parvula HOM05D006111 ORTHO05D007683 9.2e-148 527.3 303 81.8
Sed0027336 Sechium edule HOM05D006111 ORTHO05D007683 9.2e-148 527.3 336 75.3
MELO3C023560.2 Cucumis melo HOM05D006111 ORTHO05D007683 1.3e-146 523.5 340 73.8
C03p43240 Brassica napus HOM05D006111 ORTHO05D007683 1.7e-146 523.1 303 80.5
AL3G19390 Arabidopsis lyrata HOM05D006111 ORTHO05D007683 2.3e-146 522.7 303 80.5
Lalb_Chr01g0015831 Lupinus albus HOM05D006111 ORTHO05D007683 3.9e-146 521.9 332 75.0
Carub.0003s0759 Capsella rubella HOM05D006111 ORTHO05D007683 5.0e-146 521.5 303 80.2
AT3G08010 Arabidopsis thaliana HOM05D006111 ORTHO05D007683 6.6e-146 521.2 303 80.2
Lsat_1_v5_gn_4_136121 Lactuca sativa HOM05D006111 ORTHO05D007683 5.6e-145 518.1 334 76.3
Aa31LG5G18560 Aethionema arabicum HOM05D006111 ORTHO05D007683 2.8e-144 515.8 303 79.2
vmacro21191 Vaccinium macrocarpon HOM05D006111 ORTHO05D007683 8.0e-144 514.2 446 60.3
PSO339G0604 Papaver somniferum HOM05D006111 ORTHO05D007683 1.1e-143 513.8 372 69.1
PSO384G4428 Papaver somniferum HOM05D006111 ORTHO05D007683 1.5e-142 510.0 372 68.5
Sabra09G0044000 Salix brachista HOM05D006111 ORTHO05D007683 2.0e-142 509.6 352 70.7
ATR0332G055 Amborella trichopoda HOM05D006111 ORTHO05D007683 2.6e-142 509.2 302 76.5
Lj3g0026579 Lotus japonicus HOM05D006111 ORTHO05D007683 5.8e-142 508.1 303 77.6
unitig_749.g14328 Utricularia gibba HOM05D006111 ORTHO05D007683 2.4e-140 502.7 345 69.6
Ca_14461_v3 Cicer arietinum L. HOM05D006111 ORTHO05D007683 1.2e-139 500.4 347 70.0
Rhsim01G0128600 Rhododendron simsii HOM05D006111 ORTHO05D007683 1.3e-138 496.9 477 58.3
Cfa010790 Carpinus fangiana HOM05D006111 ORTHO05D007683 6.6e-138 494.6 369 68.0
Medtr3g030950 Medicago truncatula HOM05D006111 ORTHO05D007683 7.3e-137 491.1 303 76.6
Lj5C169G9 Lonicera japonica HOM05D006111 ORTHO05D007683 1.1e-135 487.3 281 80.1
Glyma.10G089700 Glycine max HOM05D006111 ORTHO05D007683 1.4e-135 486.9 303 75.9
Glyma.15G275900 Glycine max HOM05D006111 ORTHO05D007683 3.1e-135 485.7 303 76.2
VMungo1080G1123 Vigna mungo HOM05D006111 ORTHO05D007683 9.9e-134 480.7 348 68.7
Phvul.005G024500 Phaseolus vulgaris HOM05D006111 ORTHO05D007683 6.4e-133 478.0 303 75.2
Cpa.g.sc125.25 Carica papaya HOM05D006111 ORTHO05D007683 8.3e-133 477.6 406 60.6
HPP92_009763 Vanilla planifolia HOM05D006111 ORTHO05D007683 5.4e-132 474.9 371 65.0
Os02g0610800 Oryza sativa ssp. japonica HOM05D006111 ORTHO05D007683 3.5e-131 472.2 303 71.9
Psat5g208360 Pisum sativum HOM05D006111 ORTHO05D007683 4.3e-129 465.3 296 74.7
Psat3g069160 Pisum sativum HOM05D006111 ORTHO05D007683 9.6e-129 464.2 296 74.3
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 3.6e-128 462.2 288 75.0
AUR62043480 Chenopodium quinoa HOM05D006111 ORTHO05D007683 4.4e-126 455.3 303 71.3
AUR62009394 Chenopodium quinoa HOM05D006111 ORTHO05D007683 1.4e-119 433.7 370 59.7
AUR62023076 Chenopodium quinoa HOM05D006111 ORTHO05D007683 4.0e-119 432.2 303 67.7
CDE05G1285 Ceratophyllum demersum HOM05D006111 ORTHO05D007683 2.2e-117 426.4 309 68.6
Actinidia21546 Actinidia chinensis HOM05D006111 ORTHO05D007683 9.0e-111 404.4 365 60.3
BcaB03g11554 Brassica carinata HOM05D006111 ORTHO05D007683 2.1e-107 393.3 228 80.7
Pp3c6_22710 Physcomitrium patens HOM05D006111 ORTHO05D007683 4.3e-105 385.6 296 60.5
Haze_03183 Corylus avellana HOM05D006111 ORTHO05D007683 1.6e-104 383.6 302 65.2
Pp3c5_6760 Physcomitrium patens HOM05D006111 ORTHO05D007683 1.6e-104 383.6 293 60.4
Mapoly0153s0005 Marchantia polymorpha HOM05D006111 ORTHO05D007683 3.4e-102 375.9 293 59.4
A03p35610 Brassica napus HOM05D006111 ORTHO05D007683 1.4e-100 370.5 213 80.8
BraA03t12736Z Brassica rapa HOM05D006111 ORTHO05D007683 1.4e-100 370.5 213 80.8
BolC3t16593H Brassica oleracea HOM05D006111 ORTHO05D007683 3.2e-100 369.4 213 80.3
AagrBONN_evm.TU.Sc2ySwM_344.1799 Anthoceros agrestis HOM05D006111 ORTHO05D007683 3.3e-97 359.4 293 56.0
Zm00001eb246820 Zea mays HOM05D006111 ORTHO05D007683 4.1e-95 352.4 216 73.1
Medtr3g030975 Medicago truncatula HOM05D006111 ORTHO05D007683 3.2e-92 342.8 213 76.1
Actinidia20661 Actinidia chinensis HOM05D006111 ORTHO05D007683 4.1e-87 325.9 292 60.3
Gohir.A08G143600 Gossypium hirsutum HOM05D006111 ORTHO05D007683 2.7e-83 313.2 239 64.4
SMO353G0296 Selaginella moellendorffii HOM05D006111 ORTHO05D007683 1.4e-82 310.8 290 50.0
PRCOL_00003534 Prasinoderma coloniale HOM05D006111 ORTHO05D007683 1.2e-75 287.7 304 45.4
Cre17.g702500 Chlamydomonas reinhardtii HOM05D006111 ORTHO05D007683 2.3e-74 283.5 287 47.0
TPR.G35304 Trifolium pratense HOM05D006111 ORTHO05D007683 1.1e-73 281.2 230 62.2
HPP92_009753 Vanilla planifolia HOM05D006111 ORTHO05D007683 2.6e-73 280.0 177 74.6
MCO10G268 Micromonas commoda HOM05D006111 ORTHO05D007683 2.6e-70 270.0 278 46.8
Prupe.2G016000 Prunus persica HOM05D006111 ORTHO05D007683 3.2e-68 263.1 157 80.9
QL04p008446 Quercus lobata HOM05D006111 ORTHO05D007683 2.5e-60 236.9 135 84.4
CBR_g5582 Chara braunii HOM05D006111 ORTHO05D007683 1.5e-41 174.5 161 51.6
SEGI_32608 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 1.8e-39 167.5 108 67.6
A03p35600 Brassica napus HOM05D006111 ORTHO05D007683 1.6e-35 154.5 88 80.7
HanXRQChr12g0362881 Helianthus annuus HOM05D006111 ORTHO05D007683 2.3e-34 150.6 108 66.7
CBR_g5588 Chara braunii HOM05D006111 ORTHO05D007683 1.1e-31 141.7 97 66.0
HPP92_009752 Vanilla planifolia HOM05D006111 ORTHO05D007683 7.8e-30 135.6 127 55.1
SEGI_00353 Sequoiadendron giganteum HOM05D006111 ORTHO05D007683 5.8e-25 119.4 87 63.2
Medtr8g104810 Medicago truncatula HOM05D006111 ORTHO05D007683 6.6e-21 105.9 64 73.4
C03p43260 Brassica napus HOM05D006111 ORTHO05D007683 2.9e-16 90.5 48 83.3
BolC3t16595H Brassica oleracea HOM05D006111 ORTHO05D007683 2.9e-16 90.5 48 83.3
TAR628G1549 Trochodendron aralioides HOM05D006111 ORTHO05D414729 1.9e-07 61.2 41 68.3


User provided reference genes

Program Settings