Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 0.0e+00 1317.4 736 100.0
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 0.0e+00 1203.0 736 89.4
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 0.0e+00 1199.1 736 94.0
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 0.0e+00 1086.6 735 85.4
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 2.1e-308 1062.0 739 80.9
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 1.7e-278 962.6 777 71.2
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 3.8e-177 625.9 395 84.3
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 1.2e-125 454.9 709 43.2
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 1.9e-123 447.6 694 45.0
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 5.1e-113 412.9 661 42.1
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 5.6e-112 409.5 687 40.9
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 1.5e-109 401.4 668 43.0
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 1.7e-108 397.9 498 50.4
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 2.4e-107 394.0 734 38.7
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 9.3e-107 392.1 534 46.4
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 1.2e-106 391.7 686 44.8
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 1.6e-106 391.3 569 45.5
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 3.7e-103 380.2 667 39.3
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 2.4e-102 377.5 706 39.1
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 5.3e-102 376.3 692 39.3
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 1.0e-100 372.1 529 44.8
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 4.2e-99 366.7 465 49.7
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 9.3e-99 365.5 529 43.3
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 1.2e-98 365.2 509 43.6
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.2e-98 365.2 534 43.6
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.9e-98 362.5 534 43.4
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 7.9e-98 362.5 602 41.7
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 1.0e-97 362.1 531 44.3
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 1.8e-97 361.3 673 37.0
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 3.9e-97 360.1 729 37.6
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 1.5e-96 358.2 745 36.6
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 1.9e-96 357.8 635 40.6
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 5.7e-96 356.3 602 41.2
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 5.7e-96 356.3 517 43.9
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 7.4e-96 355.9 522 42.5
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 1.3e-95 355.1 644 44.9
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 2.8e-95 354.0 703 36.8
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 6.3e-95 352.8 746 40.1
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 1.8e-94 351.3 534 42.9
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 9.0e-94 349.0 485 45.8
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 4.5e-93 346.7 646 40.1
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 5.9e-93 346.3 539 43.4
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 5.9e-93 346.3 477 45.5
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 2.2e-92 344.4 670 38.1
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 3.8e-92 343.6 531 41.4
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 6.5e-92 342.8 671 40.5
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 6.5e-92 342.8 561 41.2
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 8.5e-92 342.4 637 39.9
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 8.5e-92 342.4 552 41.1
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 1.9e-91 341.3 710 37.6
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 2.5e-91 340.9 553 41.8
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 4.2e-91 340.1 748 36.6
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 9.3e-91 339.0 547 41.7
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 9.3e-91 339.0 678 38.8
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 1.2e-90 338.6 687 40.3
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.3e-89 335.1 532 41.4
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.8e-89 334.7 456 45.8
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 6.7e-89 332.8 696 36.2
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 1.9e-88 331.3 716 38.5
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 2.5e-88 330.9 478 44.1
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 5.7e-88 329.7 639 44.3
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 9.7e-88 328.9 716 37.7
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 9.7e-88 328.9 547 41.5
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 3.7e-87 327.0 673 37.3
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.1e-86 323.6 777 36.4
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 1.2e-85 322.0 516 39.7
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 2.0e-85 321.2 463 43.4
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 2.6e-85 320.9 727 37.1
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 5.9e-85 319.7 504 42.3
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 2.9e-84 317.4 542 40.6
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 3.8e-84 317.0 728 36.8
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.1e-83 315.5 470 43.4
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 1.9e-83 314.7 702 35.3
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 3.2e-83 313.9 507 40.4
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 3.2e-83 313.9 658 36.6
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 1.2e-82 312.0 538 38.8
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 2.1e-82 311.2 489 41.9
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 2.7e-82 310.8 734 34.7
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 3.6e-82 310.5 650 36.2
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 1.0e-81 308.9 538 41.4
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 8.8e-81 305.8 663 36.5
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 1.1e-80 305.4 594 37.5
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 1.5e-80 305.1 490 43.3
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 9.7e-80 302.4 499 41.3
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 1.7e-79 301.6 656 36.7
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 3.7e-79 300.4 499 41.1
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 3.7e-79 300.4 499 41.1
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 1.1e-78 298.9 574 36.8
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 2.6e-77 294.3 449 44.5
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.0e-76 292.4 657 36.4
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 3.2e-75 287.3 411 41.6
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 4.7e-74 283.5 432 44.7
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 3.3e-72 277.3 636 33.0
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 1.3e-63 248.8 342 44.2
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 1.3e-63 248.8 565 37.2
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.8e-63 247.7 373 41.6
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 8.2e-63 246.1 733 31.7
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 2.1e-58 231.5 329 45.9
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 6.3e-55 219.9 478 37.2
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 1.8e-54 218.4 262 45.8
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 3.1e-54 217.6 610 30.3
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 4.5e-53 213.8 482 35.7
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 3.7e-47 194.1 545 32.3
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 8.3e-47 193.0 168 60.1
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 3.7e-39 167.5 329 35.3
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 4.6e-37 160.6 424 30.7
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 6.6e-36 156.8 511 29.2
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.5e-27 128.3 316 31.0
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.6e-24 118.2 122 56.6
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 4.4e-24 117.5 370 31.9
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 7.6e-16 90.1 135 41.5
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 8.4e-15 86.7 80 56.2
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 3.0e-12 78.2 92 46.7
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 1.8e-09 68.9 72 47.2
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 1.3e-07 62.8 44 61.4
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.3e-07 62.8 307 24.4
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 1.4e-06 59.3 60 48.3


User provided reference genes

Program Settings