Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.3e-171 606.3 312 100.0
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 3.4e-143 511.9 277 93.1
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 8.4e-142 507.3 277 92.4
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 1.1e-128 463.8 281 83.6
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 4.6e-116 421.8 275 77.5
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 7.9e-116 421.0 275 77.5
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 1.8e-107 393.3 275 72.4
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 3.5e-95 352.4 279 66.7
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 9.8e-90 334.3 283 64.0
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 1.9e-85 320.1 279 62.0
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 4.2e-85 318.9 272 64.0
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.7e-81 307.0 271 62.7
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 2.3e-75 286.6 283 56.9
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 4.4e-74 282.3 282 55.7
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 1.7e-70 270.4 281 54.4
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 4.3e-69 265.8 282 52.1
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 1.2e-68 264.2 298 52.3
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 3.7e-65 252.7 281 51.6
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 2.4e-64 250.0 283 50.2
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 2.7e-63 246.5 283 49.8
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 6.0e-63 245.4 283 50.2
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 6.0e-63 245.4 286 50.7
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 7.8e-63 245.0 283 49.5
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 5.0e-62 242.3 282 50.7
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 2.5e-61 240.0 282 51.4
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 3.3e-61 239.6 281 49.1
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 4.7e-60 235.7 280 48.6
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 4.7e-60 235.7 287 48.1
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 6.2e-60 235.3 283 48.4
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 1.4e-59 234.2 283 48.4
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.4e-59 234.2 302 47.0
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 5.2e-59 232.3 285 48.1
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 6.8e-59 231.9 285 47.7
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.5e-58 230.7 280 46.4
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 2.2e-57 226.9 284 48.2
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 2.2e-57 226.9 284 48.2
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.1e-56 224.6 285 47.0
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 4.1e-56 222.6 286 45.8
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 5.4e-56 222.2 279 48.4
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 2.7e-55 219.9 281 46.6
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.7e-55 219.9 288 44.8
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 2.7e-55 219.9 283 48.1
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 4.6e-55 219.2 284 48.2
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 6.0e-55 218.8 302 44.7
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 7.8e-55 218.4 281 47.3
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 8.6e-54 214.9 277 45.1
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 8.6e-54 214.9 283 46.3
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 4.3e-53 212.6 286 44.8
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 1.2e-52 211.1 285 46.7
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 2.1e-52 210.3 277 46.2
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 2.8e-52 209.9 280 47.1
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 8.1e-52 208.4 283 44.9
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 4.0e-51 206.1 274 44.9
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 5.2e-51 205.7 284 44.7
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 3.4e-50 203.0 280 44.3
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 7.6e-50 201.8 273 46.2
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 9.9e-50 201.4 276 44.2
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 9.9e-50 201.4 276 45.3
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 9.9e-50 201.4 283 42.0
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.7e-49 200.7 285 43.2
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 1.7e-49 200.7 283 42.4
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 2.2e-49 200.3 284 43.3
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 2.2e-49 200.3 285 45.3
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 3.8e-49 199.5 276 44.6
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 8.4e-49 198.4 283 43.5
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 1.1e-48 198.0 282 43.6
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 3.2e-48 196.4 274 45.6
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 5.4e-48 195.7 283 43.1
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 5.4e-48 195.7 279 43.4
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 5.4e-48 195.7 282 44.0
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 7.1e-48 195.3 286 42.7
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 7.1e-48 195.3 276 43.1
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 9.2e-48 194.9 279 43.0
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 1.2e-47 194.5 285 42.5
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 1.2e-47 194.5 282 42.6
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 1.6e-47 194.1 274 43.4
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 2.1e-47 193.7 280 42.9
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 2.7e-47 193.4 295 43.7
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 3.5e-47 193.0 284 43.7
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 1.0e-46 191.4 282 42.9
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 1.7e-46 190.7 285 42.1
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.3e-46 190.3 290 40.7
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 6.6e-46 188.7 283 43.5
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-45 187.2 276 42.8
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.3e-45 186.0 276 42.8
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 5.6e-45 185.7 276 42.8
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 4.7e-44 182.6 276 42.0
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.1e-43 181.4 276 41.7
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 1.4e-43 181.0 205 47.3
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.1e-43 179.9 276 41.7
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 3.1e-43 179.9 276 41.3
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 6.9e-43 178.7 276 42.0
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 1.5e-42 177.6 242 45.5
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 2.0e-42 177.2 273 43.6
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 3.4e-42 176.4 261 41.4
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 9.9e-42 174.9 267 39.3
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 3.8e-41 172.9 231 45.5
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 4.9e-41 172.6 278 38.1
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 6.4e-41 172.2 283 42.0
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.4e-40 171.0 280 40.0
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.4e-40 171.0 261 41.4
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 1.2e-39 167.9 268 39.9
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.6e-39 167.5 274 39.8
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 2.1e-39 167.2 239 42.7
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 2.1e-39 167.2 240 42.9
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 2.1e-39 167.2 271 39.5
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.6e-39 166.0 273 40.7
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.7e-38 164.1 276 40.2
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 1.7e-38 164.1 312 37.5
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.3e-38 163.7 275 39.6
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 3.0e-38 163.3 284 40.5
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 8.7e-38 161.8 271 41.3
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 1.5e-37 161.0 274 40.5
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 1.3e-36 157.9 284 38.4
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.6e-36 157.5 281 35.9
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 2.1e-36 157.1 273 39.9
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 4.8e-36 156.0 276 35.1
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 2.4e-35 153.7 297 36.7
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 5.3e-35 152.5 274 39.4
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 6.9e-35 152.1 286 39.9
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 2.0e-34 150.6 295 36.6
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 1.4e-32 144.4 276 36.6
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.9e-32 144.1 194 47.9
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.9e-32 144.1 271 40.6
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 3.2e-32 143.3 281 36.7
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 5.4e-32 142.5 271 36.9
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 1.6e-31 141.0 275 37.1
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.7e-31 140.2 278 37.1
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 6.0e-31 139.0 265 37.7
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.3e-30 137.9 274 37.6
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 1.8e-30 137.5 275 38.2
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 2.3e-30 137.1 276 35.5
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 3.9e-30 136.3 276 36.6
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 1.1e-29 134.8 291 35.4
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 1.9e-29 134.0 265 37.0
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 3.3e-29 133.3 247 37.7
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.3e-28 131.3 274 33.2
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.6e-28 131.0 273 33.3
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 8.1e-28 128.6 164 43.3
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 5.3e-27 125.9 262 34.7
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 5.3e-27 125.9 262 34.7
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.2e-26 124.8 285 34.4
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 4.5e-26 122.9 265 33.2
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 4.5e-26 122.9 304 29.9
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 5.8e-26 122.5 265 33.2
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 7.6e-26 122.1 270 38.1
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 2.9e-25 120.2 277 33.2
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 6.4e-25 119.0 222 33.8
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 1.4e-24 117.9 261 33.3
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 4.2e-24 116.3 228 35.5
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 9.3e-24 115.2 277 33.6
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 6.7e-22 109.0 261 31.0
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 6.7e-22 109.0 261 31.0
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 9.6e-21 105.1 278 33.1
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 8.2e-20 102.1 272 31.6
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 4.0e-19 99.8 272 30.9
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 4.0e-19 99.8 272 31.2
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 2.6e-18 97.1 267 30.7
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.6e-18 97.1 80 56.2
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 5.8e-18 95.9 256 29.3
Lj6P578T28 Lonicera japonica HOM05D001925 ORTHO05D004257 1.3e-17 94.7 145 40.0
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 1.7e-17 94.4 272 30.5
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 1.1e-16 91.7 278 30.9
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 1.1e-16 91.7 278 30.9
Lj7P510T18 Lonicera japonica HOM05D001925 ORTHO05D004257 1.4e-16 91.3 146 37.7
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 4.2e-16 89.7 275 29.1
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 7.1e-16 89.0 274 28.1
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.6e-15 87.8 291 26.5
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.0e-14 85.1 268 29.5
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 5.7e-13 79.3 345 26.1
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 7.4e-13 79.0 277 27.1
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 2.4e-11 73.9 280 26.1
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 5.9e-10 69.3 313 23.3
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 7.6e-10 68.9 145 33.1
SEGI_37364 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 7.6e-10 68.9 253 25.3
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 3.6e-07 60.1 111 31.5
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 4.6e-07 59.7 74 36.5
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.0e-06 58.5 58 50.0
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 2.3e-06 57.4 58 48.3


User provided reference genes

Program Settings