Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006503 Solanum tuberosum HOM05D005028 ORTHO05D006028 5.5e-113 411.0 210 100.0
Sopen10g006230 Solanum pennellii HOM05D005028 ORTHO05D006028 9.1e-108 393.7 210 94.8
Solyc10g012400.3 Solanum lycopersicum HOM05D005028 ORTHO05D006028 1.7e-106 389.4 210 93.8
CAN.G116.15 Capsicum annuum HOM05D005028 ORTHO05D006028 5.2e-95 351.3 211 86.3
Nitab4.5_0002811g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 1.1e-89 333.6 209 81.8
Peaxi162Scf00008g02424 Petunia axillaris HOM05D005028 ORTHO05D006028 1.4e-84 316.6 202 81.7
Nitab4.5_0000386g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 7.0e-84 314.3 211 77.7
Oeu052955.1 Olea europaea HOM05D005028 ORTHO05D006028 3.1e-71 272.3 193 71.5
Nitab4.5_0000583g0210 Nicotiana tabacum HOM05D005028 ORTHO05D006028 4.1e-68 261.9 197 68.0
Dinv32494 Davidia involucrata HOM05D005028 ORTHO05D006028 2.7e-67 259.2 202 64.9
Cc02_g38190 Coffea canephora HOM05D005028 ORTHO05D006028 1.7e-66 256.5 195 65.6
Actinidia10042 Actinidia chinensis HOM05D005028 ORTHO05D006028 2.1e-64 249.6 182 68.1
TWI23G0157 Tripterygium wilfordii HOM05D005028 ORTHO05D006028 8.1e-64 247.7 194 63.9
MSTRG.20842 Avicennia marina HOM05D005028 ORTHO05D006028 1.2e-62 243.8 202 64.9
Nitab4.5_0006018g0040 Nicotiana tabacum HOM05D005028 ORTHO05D006028 1.5e-62 243.4 197 66.0
SGA_v2.0_scaffold95G28829 Striga asiatica HOM05D005028 ORTHO05D006028 1.5e-62 243.4 195 63.1
Manes.05G033100 Manihot esculenta HOM05D005028 ORTHO05D006028 2.0e-62 243.0 186 64.0
ClCG05G001460 Citrullus lanatus HOM05D005028 ORTHO05D006028 2.6e-62 242.7 208 58.7
Prupe.2G172500 Prunus persica HOM05D005028 ORTHO05D006028 2.6e-62 242.7 197 60.4
Actinidia20894 Actinidia chinensis HOM05D005028 ORTHO05D006028 1.7e-61 240.0 183 65.6
Hma1.2p1_0780F.1_g216740 Hydrangea macrophylla HOM05D005028 ORTHO05D006028 1.7e-61 240.0 195 62.6
GSVIVG01026950001 Vitis vinifera HOM05D005028 ORTHO05D006028 3.8e-61 238.8 195 60.5
Lj7A510T39 Lonicera japonica HOM05D005028 ORTHO05D006028 3.2e-60 235.7 199 61.8
MD01G1065300 Malus domestica HOM05D005028 ORTHO05D006028 3.2e-60 235.7 194 57.7
TAR374G1129 Trochodendron aralioides HOM05D005028 ORTHO05D006028 7.1e-60 234.6 178 62.4
vmacro13267 Vaccinium macrocarpon HOM05D005028 ORTHO05D006028 7.1e-60 234.6 198 59.6
Atru.chr5.513 Acer truncatum HOM05D005028 ORTHO05D006028 1.2e-59 233.8 207 57.0
RcHm_v2.0_Chr1g0356151 Rosa chinensis HOM05D005028 ORTHO05D006028 3.5e-59 232.3 195 56.9
Cfa003905 Carpinus fangiana HOM05D005028 ORTHO05D006028 4.6e-59 231.9 199 56.3
Haze_15525 Corylus avellana HOM05D005028 ORTHO05D006028 4.6e-59 231.9 199 56.8
MELO3C006103.2 Cucumis melo HOM05D005028 ORTHO05D006028 4.6e-59 231.9 206 56.3
TAR375G0288 Trochodendron aralioides HOM05D005028 ORTHO05D006028 4.6e-59 231.9 194 56.7
CiPaw.02G032200 Carya illinoinensis HOM05D005028 ORTHO05D006028 6.0e-59 231.5 201 56.7
Migut.B01770 Erythranthe guttata HOM05D005028 ORTHO05D006028 1.0e-58 230.7 183 64.5
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 1.3e-58 230.3 188 58.0
Lsat_1_v5_gn_4_35880 Lactuca sativa HOM05D005028 ORTHO05D006028 1.3e-58 230.3 203 59.1
QL04p053913 Quercus lobata HOM05D005028 ORTHO05D006028 2.3e-58 229.6 190 61.6
MD07G1135200 Malus domestica HOM05D005028 ORTHO05D006028 6.6e-58 228.0 185 59.5
Peaxi162Scf00020g00731 Petunia axillaris HOM05D005028 ORTHO05D006028 6.6e-58 228.0 211 61.1
Nn1g01568 Nelumbo nucifera HOM05D005028 ORTHO05D006028 1.5e-57 226.9 192 56.8
Thecc.01G357500 Theobroma cacao HOM05D005028 ORTHO05D006028 1.5e-57 226.9 178 64.0
CANSAT56G0390 Cannabis sativa HOM05D005028 ORTHO05D006028 2.5e-57 226.1 175 64.0
unitig_26.g9301 Utricularia gibba HOM05D000773 ORTHO05D006028 3.3e-57 225.7 195 59.0
Potri.014G086200 Populus trichocarpa HOM05D005028 ORTHO05D006028 7.3e-57 224.6 189 57.7
Sabra14G0062500 Salix brachista HOM05D005028 ORTHO05D006028 2.8e-56 222.6 206 54.9
Duzib138G1785 Durio zibethinus HOM05D005028 ORTHO05D006028 3.6e-56 222.2 185 59.5
ECA234G2903 Erigeron canadensis HOM05D005028 ORTHO05D006028 3.6e-56 222.2 205 57.1
Sed0007874 Sechium edule HOM05D005028 ORTHO05D006028 3.6e-56 222.2 187 58.3
THA.LOC104802036 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 1.8e-55 219.9 207 56.0
DCAR_015106 Daucus carota HOM05D005028 ORTHO05D006028 2.4e-55 219.5 190 57.9
PSO210G4593 Papaver somniferum HOM05D005028 ORTHO05D006028 4.0e-55 218.8 206 54.9
PSO832G0747 Papaver somniferum HOM05D005028 ORTHO05D006028 6.9e-55 218.0 205 55.1
Solyc01g094780.4 Solanum lycopersicum HOM05D005028 ORTHO05D006028 3.4e-54 215.7 183 61.2
HanXRQChr16g0522391 Helianthus annuus HOM05D005028 ORTHO05D006028 4.4e-54 215.3 173 60.1
Gohir.D07G147300 Gossypium hirsutum HOM05D005028 ORTHO05D006028 9.9e-54 214.2 201 54.2
Ah.05g180490 Amaranthus hybridus HOM05D005028 ORTHO05D006028 1.3e-53 213.8 205 50.7
Ciclev10022241m.g Citrus clementina HOM05D005028 ORTHO05D006028 2.2e-53 213.0 198 51.0
MBI18_g02833_MAGBIO Magnolia biondii HOM05D005028 ORTHO05D006028 6.4e-53 211.5 203 53.7
SalBow3G2695 Salvia bowleyana HOM05D005028 ORTHO05D006028 1.4e-52 210.3 186 60.8
PGSC0003DMG400000176 Solanum tuberosum HOM05D005028 ORTHO05D006028 1.4e-52 210.3 198 59.6
Haze_01381 Corylus avellana HOM05D005028 ORTHO05D006028 1.9e-52 209.9 169 58.6
DCAR_007443 Daucus carota HOM05D005028 ORTHO05D006028 1.9e-52 209.9 183 55.7
THA.LOC104817298 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 2.4e-52 209.5 213 51.2
FvH4_7g14630 Fragaria vesca HOM05D005028 ORTHO05D006028 4.2e-52 208.8 203 52.2
FAN06G2873 Fragaria x ananassa HOM05D005028 ORTHO05D006028 4.2e-52 208.8 203 52.2
Cpa.g.sc11.21 Carica papaya HOM05D005028 ORTHO05D006028 5.4e-52 208.4 195 53.8
Rhsim07G0013700 Rhododendron simsii HOM05D005028 ORTHO05D006028 5.4e-52 208.4 175 59.4
arahy.Tifrunner.gnm1.ann1.C7F7IC Arachis hypogaea HOM05D005028 ORTHO05D006028 9.3e-52 207.6 200 51.0
FAN06G0569 Fragaria x ananassa HOM05D005028 ORTHO05D006028 9.3e-52 207.6 203 51.7
arahy.Tifrunner.gnm1.ann1.US4SCG Arachis hypogaea HOM05D005028 ORTHO05D006028 1.2e-51 207.2 192 53.1
FAN03G1762 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.2e-51 207.2 203 51.7
PGR042G1182 Punica granatum HOM05D005028 ORTHO05D006028 1.2e-51 207.2 167 59.3
FAN10G3452 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.6e-51 206.8 203 52.2
Eucgr.E00119 Eucalyptus grandis HOM05D005028 ORTHO05D006028 2.1e-51 206.5 180 59.4
FAN10G4091 Fragaria x ananassa HOM05D005028 ORTHO05D006028 2.1e-51 206.5 203 52.2
Gohir.A07G141900 Gossypium hirsutum HOM05D005028 ORTHO05D006028 2.1e-51 206.5 200 52.0
FAN01G1655 Fragaria x ananassa HOM05D005028 ORTHO05D006028 2.7e-51 206.1 203 51.7
EL10Ac1g00399 Beta vulgaris HOM05D005028 ORTHO05D006028 3.5e-51 205.7 194 51.5
arahy.Tifrunner.gnm1.ann1.EZF1CG Arachis hypogaea HOM05D005028 ORTHO05D006028 7.8e-51 204.5 192 52.6
Phvul.008G061400 Phaseolus vulgaris HOM05D005028 ORTHO05D006028 1.0e-50 204.1 193 53.4
Lsat_1_v5_gn_7_18681 Lactuca sativa HOM05D005028 ORTHO05D006028 2.3e-50 203.0 181 56.4
VMungo1383G1301 Vigna mungo HOM05D005028 ORTHO05D006028 3.0e-50 202.6 193 52.8
Glyma.18G234400 Glycine max HOM05D005028 ORTHO05D006028 3.9e-50 202.2 198 53.0
AL4G45230 Arabidopsis lyrata HOM05D005028 ORTHO05D006028 8.7e-50 201.1 205 51.2
HPP92_025966 Vanilla planifolia HOM05D005028 ORTHO05D006028 1.1e-49 200.7 171 57.9
Lsat_1_v5_gn_7_4161 Lactuca sativa HOM05D005028 ORTHO05D006028 1.9e-49 199.9 187 55.1
AUR62004377 Chenopodium quinoa HOM05D005028 ORTHO05D006028 3.3e-49 199.1 156 59.0
AUR62022583 Chenopodium quinoa HOM05D005028 ORTHO05D006028 4.3e-49 198.7 156 59.0
Gorai.001G168500 Gossypium raimondii HOM05D005028 ORTHO05D006028 7.3e-49 198.0 232 47.0
QL04p053899 Quercus lobata HOM05D005028 ORTHO05D006028 1.6e-48 196.8 172 57.0
Sc23g0002800 Simmondsia chinensis HOM05D005028 ORTHO05D006028 6.2e-48 194.9 204 46.1
ATR0680G399 Amborella trichopoda HOM05D005028 ORTHO05D006028 1.4e-47 193.7 191 52.4
Glyma.09G258300 Glycine max HOM05D005028 ORTHO05D006028 1.4e-47 193.7 198 52.0
Lalb_Chr04g0253811 Lupinus albus HOM05D005028 ORTHO05D006028 1.8e-47 193.4 194 51.0
CDE09G1157 Ceratophyllum demersum HOM05D005028 ORTHO05D006028 3.1e-47 192.6 196 54.1
Lj1g0018179 Lotus japonicus HOM05D005028 ORTHO05D006028 3.1e-47 192.6 197 49.2
Thhalv10001635m.g Eutrema salsugineum HOM05D005028 ORTHO05D006028 2.6e-46 189.5 197 50.3
HanXRQChr06g0170181 Helianthus annuus HOM05D005028 ORTHO05D006028 3.4e-46 189.1 181 49.7
A03p25430 Brassica napus HOM05D005028 ORTHO05D006028 4.5e-46 188.7 210 48.6
Medtr7g077890 Medicago truncatula HOM05D005028 ORTHO05D006028 4.5e-46 188.7 197 49.7
TPR.G37810 Trifolium pratense HOM05D005028 ORTHO05D006028 5.8e-46 188.3 197 49.7
AT2G46000 Arabidopsis thaliana HOM05D005028 ORTHO05D006028 3.8e-45 185.7 207 48.8
Psat3g107720 Pisum sativum HOM05D005028 ORTHO05D006028 4.9e-45 185.3 196 49.0
Carub.0004s2870 Capsella rubella HOM05D005028 ORTHO05D006028 6.4e-45 184.9 207 48.3
Aa31LG1G27410 Aethionema arabicum HOM05D005028 ORTHO05D006028 8.4e-45 184.5 196 50.5
Ca_07933_v3 Cicer arietinum L. HOM05D005028 ORTHO05D006028 8.4e-45 184.5 199 47.7
Sp4g28070 Schrenkiella parvula HOM05D005028 ORTHO05D006028 3.2e-44 182.6 207 47.3
BolC3t15383H Brassica oleracea HOM05D005028 ORTHO05D006028 4.2e-44 182.2 195 48.7
Os03g0148300 Oryza sativa ssp. japonica HOM05D005028 ORTHO05D006028 4.2e-44 182.2 161 54.0
SMO203G0053 Selaginella moellendorffii HOM05D005028 ORTHO05D006028 7.1e-44 181.4 165 51.5
C04p72030 Brassica napus HOM05D005028 ORTHO05D006028 9.3e-44 181.0 207 45.4
BolC4t28699H Brassica oleracea HOM05D005028 ORTHO05D006028 1.2e-43 180.6 207 45.4
CARHR141270 Cardamine hirsuta HOM05D005028 ORTHO05D006028 2.1e-43 179.9 201 47.8
A04p34210 Brassica napus HOM05D005028 ORTHO05D006028 7.9e-43 177.9 206 44.2
C03p30330 Brassica napus HOM05D005028 ORTHO05D006028 7.9e-43 177.9 188 48.9
BraA04t18882Z Brassica rapa HOM05D005028 ORTHO05D006028 7.9e-43 177.9 206 44.2
COL.COLO4_12727 Corchorus olitorius HOM05D005028 ORTHO05D006028 2.3e-42 176.4 205 46.3
C04p06920 Brassica napus HOM05D005028 ORTHO05D006028 4.3e-41 172.2 196 45.9
BolC4t22313H Brassica oleracea HOM05D005028 ORTHO05D006028 4.3e-41 172.2 196 45.9
Zm00001eb003870 Zea mays HOM05D005028 ORTHO05D006028 1.6e-40 170.2 155 52.9
A05p05990 Brassica napus HOM05D005028 ORTHO05D006028 2.8e-40 169.5 196 45.4
BraA05t19562Z Brassica rapa HOM05D005028 ORTHO05D006028 2.8e-40 169.5 196 45.4
Aqoxy7G00275 Aquilegia oxysepala HOM05D005028 ORTHO05D006028 3.7e-40 169.1 195 45.6
BcaC02g12158 Brassica carinata HOM05D005028 ORTHO05D006028 6.2e-40 168.3 189 46.6
AagrBONN_evm.TU.Sc2ySwM_228.1428 Anthoceros agrestis HOM05D005028 ORTHO05D006028 1.8e-39 166.8 159 51.6
Zm00001eb402990 Zea mays HOM05D005028 ORTHO05D006028 5.3e-39 165.2 164 49.4
BcaC01g05100 Brassica carinata HOM05D005028 ORTHO05D006028 1.3e-37 160.6 143 55.2
Mapoly0023s0066 Marchantia polymorpha HOM05D005028 ORTHO05D006028 2.2e-37 159.8 174 46.6
BraA03t11762Z Brassica rapa HOM05D005028 ORTHO05D006028 4.9e-37 158.7 148 53.4
Manes.01G255500 Manihot esculenta HOM05D005028 ORTHO05D006028 3.0e-34 149.4 186 45.7
Pp3c14_2680 Physcomitrium patens HOM05D005028 ORTHO05D006028 2.8e-32 142.9 157 48.4
SEGI_06430 Sequoiadendron giganteum HOM05D005028 ORTHO05D006028 1.4e-31 140.6 123 56.9
HanXRQChr04g0121191 Helianthus annuus HOM05D005028 ORTHO05D006028 1.7e-29 133.7 153 44.4
Ciclev10006561m.g Citrus clementina HOM05D005028 ORTHO05D006028 1.9e-28 130.2 120 53.3
RcHm_v2.0_Chr1g0356451 Rosa chinensis HOM05D005028 ORTHO05D006028 7.9e-27 124.8 100 57.0
A04p17020 Brassica napus HOM05D005028 ORTHO05D006028 3.9e-26 122.5 180 38.9
CANSAT25G0788 Cannabis sativa HOM05D005028 ORTHO05D006028 2.4e-23 113.2 76 68.4
BcaB01g03242 Brassica carinata HOM05D005028 ORTHO05D006028 7.7e-22 108.2 132 46.2
BraA08t32322Z Brassica rapa HOM05D005028 ORTHO05D006028 3.8e-21 105.9 95 52.6
BcaC02g07785 Brassica carinata HOM05D005028 ORTHO05D006028 5.0e-21 105.5 138 42.8
CBR_g3867 Chara braunii HOM05D005028 ORTHO05D006028 1.3e-13 80.9 161 36.0
C09p26600 Brassica napus HOM05D005028 ORTHO05D006028 1.4e-12 77.4 122 37.7
ECA236G3403 Erigeron canadensis HOM05D005028 ORTHO05D006028 2.5e-12 76.6 80 47.5
Cfa010782 Carpinus fangiana HOM05D005028 ORTHO05D006028 2.1e-11 73.6 57 57.9
BcaC02g08371 Brassica carinata HOM05D005028 ORTHO05D006028 4.7e-11 72.4 63 54.0
MCO07G199 Micromonas commoda HOM05D005028 ORTHO05D006028 5.1e-10 68.9 225 27.1
arahy.Tifrunner.gnm1.ann1.PAI5YG Arachis hypogaea HOM05D005028 ORTHO05D006028 8.2e-08 61.6 55 50.9
Atru.chr3.1868 Acer truncatum HOM05D005028 ORTHO05D006028 1.8e-07 60.5 43 60.5
CBR_g38724 Chara braunii HOM05D002446 ORTHO05D002941 2.4e-07 60.1 135 35.6
Atru.chr3.1882 Acer truncatum HOM05D005028 ORTHO05D006028 3.1e-07 59.7 42 61.9


User provided reference genes

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