Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006467 Solanum tuberosum HOM05D001543 ORTHO05D001722 4.4e-85 318.2 190 100.0
PGSC0003DMG400001694 Solanum tuberosum HOM05D001543 ORTHO05D001722 9.0e-54 214.2 179 79.9
Peaxi162Scf00853g00434 Petunia axillaris HOM05D001543 ORTHO05D001722 5.3e-46 188.3 180 67.8
Solyc01g088800.4 Solanum lycopersicum HOM05D001543 ORTHO05D001722 2.1e-42 176.4 179 64.8
GSVIVG01018314001 Vitis vinifera HOM05D001543 ORTHO05D001722 1.9e-35 153.3 185 58.9
Nitab4.5_0000563g0160 Nicotiana tabacum HOM05D001543 ORTHO05D001722 4.6e-34 148.7 187 57.2
Peaxi162Scf00103g01116 Petunia axillaris HOM05D001543 ORTHO05D001722 1.0e-33 147.5 179 60.3
Dinv43601 Davidia involucrata HOM05D001543 ORTHO05D001722 1.8e-33 146.7 185 59.5
Nitab4.5_0004425g0010 Nicotiana tabacum HOM05D001543 ORTHO05D001722 2.3e-33 146.4 178 57.9
Solyc10g062340.2 Solanum lycopersicum HOM05D001543 ORTHO05D001722 3.3e-32 142.5 179 53.6
Hma1.2p1_1882F.1_g306400 Hydrangea macrophylla HOM05D001543 ORTHO05D001722 9.6e-32 141.0 180 58.3
Nitab4.5_0002106g0030 Nicotiana tabacum HOM05D001543 ORTHO05D001722 1.6e-31 140.2 179 57.0
Sopen00g003100 Solanum pennellii HOM05D001543 ORTHO05D001722 1.6e-31 140.2 179 53.6
vmacro21069 Vaccinium macrocarpon HOM05D001543 ORTHO05D001722 2.1e-31 139.8 179 57.5
Sopen01g035640 Solanum pennellii HOM05D001543 ORTHO05D001722 1.4e-30 137.1 179 59.2
PGSC0003DMG400003302 Solanum tuberosum HOM05D001543 ORTHO05D001722 1.4e-30 137.1 179 54.2
Rhsim01G0141800 Rhododendron simsii HOM05D001543 ORTHO05D001722 1.5e-29 133.7 179 60.3
Sabra02G0108800 Salix brachista HOM05D001543 ORTHO05D001722 2.6e-29 132.9 184 54.3
unitig_22.g5409 Utricularia gibba HOM05D001543 ORTHO05D001722 3.4e-29 132.5 186 45.7
SalBow5G2614 Salvia bowleyana HOM05D001543 ORTHO05D001722 1.0e-28 131.0 179 54.7
Gohir.A11G074600 Gossypium hirsutum HOM05D001543 ORTHO05D001722 1.3e-28 130.6 179 41.9
Potri.002G139700 Populus trichocarpa HOM05D001543 ORTHO05D001722 2.9e-28 129.4 182 56.6
Oeu024403.4 Olea europaea HOM05D001543 ORTHO05D001722 5.0e-28 128.6 182 53.8
Gorai.007G085100 Gossypium raimondii HOM05D001543 ORTHO05D001722 3.2e-27 125.9 179 41.9
Gohir.D11G079300 Gossypium hirsutum HOM05D001543 ORTHO05D001722 7.2e-27 124.8 179 41.3
Hund17112 Selenicereus undatus HOM05D001543 ORTHO05D001722 7.2e-27 124.8 187 48.7
Sabra14G0038600 Salix brachista HOM05D001543 ORTHO05D001722 1.2e-26 124.0 182 52.2
Gohir.A11G074700 Gossypium hirsutum HOM05D001543 ORTHO05D001722 2.1e-26 123.2 179 40.8
Glyma.03G107700 Glycine max HOM05D001543 ORTHO05D001722 2.7e-26 122.9 179 49.7
Glyma.07G119000 Glycine max HOM05D001543 ORTHO05D001722 2.7e-26 122.9 179 45.3
CANSAT25G3262 Cannabis sativa HOM05D001543 ORTHO05D001722 7.9e-26 121.3 188 52.7
Lalb_Chr12g0210441 Lupinus albus HOM05D001543 ORTHO05D001722 7.9e-26 121.3 179 54.2
Sopen10g026850 Solanum pennellii HOM05D001543 ORTHO05D001722 7.9e-26 121.3 188 48.4
Atru.chr5.97 Acer truncatum HOM05D001543 ORTHO05D001722 1.0e-25 120.9 179 54.2
CiPaw.13G024300 Carya illinoinensis HOM05D001543 ORTHO05D001722 1.3e-25 120.6 192 51.0
Sabra14G0036500 Salix brachista HOM05D001543 ORTHO05D001722 2.3e-25 119.8 182 53.8
CAN.G768.3 Capsicum annuum HOM05D001543 ORTHO05D001722 3.0e-25 119.4 130 65.4
CiPaw.14G018300 Carya illinoinensis HOM05D001543 ORTHO05D001722 6.7e-25 118.2 184 51.6
Lalb_Chr19g0126391 Lupinus albus HOM05D001543 ORTHO05D001722 6.7e-25 118.2 181 45.9
TPR.G32125 Trifolium pratense HOM05D001543 ORTHO05D001722 6.7e-25 118.2 179 51.4
CSS0014924 Camellia sinensis var. sinensis HOM05D001543 ORTHO05D001722 8.7e-25 117.9 180 52.2
Phvul.010G044700 Phaseolus vulgaris HOM05D001543 ORTHO05D001722 1.9e-24 116.7 179 54.2
Haze_02878 Corylus avellana HOM05D001543 ORTHO05D001722 4.3e-24 115.5 184 45.7
PGSC0003DMG400003492 Solanum tuberosum HOM05D001543 ORTHO05D001722 4.3e-24 115.5 178 53.4
PGSC0003DMG400007594 Solanum tuberosum HOM05D001543 ORTHO05D001722 5.7e-24 115.2 93 66.7
Glyma.18G248200 Glycine max HOM05D001543 ORTHO05D001722 7.4e-24 114.8 181 48.6
Nitab4.5_0000228g0010 Nicotiana tabacum HOM05D001543 ORTHO05D001722 7.4e-24 114.8 179 52.0
QL04p028571 Quercus lobata HOM05D001543 ORTHO05D001722 7.4e-24 114.8 179 54.2
THA.LOC104802502 Tarenaya hassleriana HOM05D001543 ORTHO05D001722 1.6e-23 113.6 182 39.6
Lalb_Chr07g0195281 Lupinus albus HOM05D001543 ORTHO05D001722 2.2e-23 113.2 179 50.3
Cc02_g25380 Coffea canephora HOM05D001543 ORTHO05D001722 4.8e-23 112.1 179 49.2
MELO3C006286.2 Cucumis melo HOM05D001543 ORTHO05D001722 4.8e-23 112.1 179 55.9
Ciclev10018944m.g Citrus clementina HOM05D001543 ORTHO05D001722 1.1e-22 110.9 179 50.8
CsaV3_3G010670 Cucumis sativus L. HOM05D001543 ORTHO05D001722 1.1e-22 110.9 179 55.3
Solyc10g062180.2 Solanum lycopersicum HOM05D001543 ORTHO05D001722 1.4e-22 110.5 178 50.6
Manes.05G056900 Manihot esculenta HOM05D001543 ORTHO05D001722 3.1e-22 109.4 182 48.4
SGA_v2.0_scaffold340G49337 Striga asiatica HOM05D001543 ORTHO05D001722 4.1e-22 109.0 173 48.6
TWI23G1103 Tripterygium wilfordii HOM05D001543 ORTHO05D001722 6.9e-22 108.2 179 50.8
Oeu018078.2 Olea europaea HOM05D001543 ORTHO05D001722 1.5e-21 107.1 180 55.0
Migut.B01504 Erythranthe guttata HOM05D001543 ORTHO05D001722 4.5e-21 105.5 184 46.2
CDE12G0756 Ceratophyllum demersum HOM05D001543 ORTHO05D001722 5.9e-21 105.1 185 50.3
Thhalv10001313m.g Eutrema salsugineum HOM05D001543 ORTHO05D001722 7.7e-21 104.8 179 47.5
FAN10G3391 Fragaria x ananassa HOM05D001543 ORTHO05D001722 1.3e-20 104.0 184 48.9
MBI04_g38565_MAGBIO Magnolia biondii HOM05D001543 ORTHO05D001722 1.3e-20 104.0 179 46.4
MD07G1096800 Malus domestica HOM05D001543 ORTHO05D001722 1.3e-20 104.0 188 43.6
CDE04G2807 Ceratophyllum demersum HOM05D001543 ORTHO05D001722 1.7e-20 103.6 179 46.4
FAN10G3183 Fragaria x ananassa HOM05D001543 ORTHO05D001722 2.9e-20 102.8 184 48.9
Sed0010571 Sechium edule HOM05D001543 ORTHO05D001722 2.9e-20 102.8 177 46.9
Potri.014G051500 Populus trichocarpa HOM05D001543 ORTHO05D001722 3.8e-20 102.4 182 52.2
HanXRQChr01g0019921 Helianthus annuus HOM05D001543 ORTHO05D001722 5.0e-20 102.1 183 47.0
VMungo1383G3467 Vigna mungo HOM05D001543 ORTHO05D001722 6.5e-20 101.7 179 46.9
RcHm_v2.0_Chr1g0345261 Rosa chinensis HOM05D001543 ORTHO05D001722 1.1e-19 100.9 182 51.6
ATR0665G561 Amborella trichopoda HOM05D001543 ORTHO05D001722 1.9e-19 100.1 150 58.0
TAR636G0309 Trochodendron aralioides HOM05D001543 ORTHO05D001722 4.2e-19 99.0 180 51.1
ClCG05G003050 Citrullus lanatus HOM05D001543 ORTHO05D001722 2.1e-18 96.7 179 52.0
Gohir.D11G079400 Gossypium hirsutum HOM05D001543 ORTHO05D001722 2.1e-18 96.7 179 48.0
SGA_v2.0_scaffold52G19257 Striga asiatica HOM05D001543 ORTHO05D001722 3.6e-18 95.9 179 38.0
Eucgr.D01204 Eucalyptus grandis HOM05D001543 ORTHO05D001722 7.9e-18 94.7 187 44.4
Lj7A549T58 Lonicera japonica HOM05D001543 ORTHO05D001722 1.4e-17 94.0 183 49.7
HPP92_002461 Vanilla planifolia HOM05D001543 ORTHO05D001722 1.4e-17 94.0 184 44.0
CARHR139930 Cardamine hirsuta HOM05D001543 ORTHO05D001722 6.7e-17 91.7 179 43.6
HPP92_002475 Vanilla planifolia HOM05D001543 ORTHO05D001722 6.7e-17 91.7 185 43.2
Glyma.09G245000 Glycine max HOM05D001543 ORTHO05D001722 1.1e-16 90.9 179 47.5
Ca_08046_v3 Cicer arietinum L. HOM05D001543 ORTHO05D001722 1.5e-16 90.5 158 38.0
Ca_08052_v3 Cicer arietinum L. HOM05D001543 ORTHO05D001722 1.5e-16 90.5 158 38.0
EL10Ac1g00738 Beta vulgaris HOM05D001543 ORTHO05D001722 2.0e-16 90.1 201 46.8
COL.COLO4_12374 Corchorus olitorius HOM05D001543 ORTHO05D001722 2.0e-16 90.1 193 37.3
Lj9A553G38 Lonicera japonica HOM05D001543 ORTHO05D001722 2.0e-16 90.1 179 42.5
Sc02g0003200 Simmondsia chinensis HOM05D001543 ORTHO05D001722 2.5e-16 89.7 187 46.5
Aa31LG1G26260 Aethionema arabicum HOM05D001543 ORTHO05D001722 3.3e-16 89.4 182 47.3
Lj3g0023648 Lotus japonicus HOM05D001543 ORTHO05D001722 4.3e-16 89.0 183 42.6
AT2G44710 Arabidopsis thaliana HOM05D001543 ORTHO05D001722 7.4e-16 88.2 179 45.8
ECA248G1955 Erigeron canadensis HOM05D001543 ORTHO05D001722 9.7e-16 87.8 189 42.9
Duzib133G1142 Durio zibethinus HOM05D001543 ORTHO05D001722 1.7e-15 87.0 197 34.5
PGR004G2018 Punica granatum HOM05D001543 ORTHO05D001722 1.7e-15 87.0 202 36.6
AL4G43770 Arabidopsis lyrata HOM05D001543 ORTHO05D001722 2.2e-15 86.7 179 48.0
Dinv44039 Davidia involucrata HOM05D001543 ORTHO05D001722 2.8e-15 86.3 134 44.8
FvH4_7g09210 Fragaria vesca HOM05D001543 ORTHO05D001722 3.7e-15 85.9 185 47.6
TAR374G0507 Trochodendron aralioides HOM05D001543 ORTHO05D001722 4.8e-15 85.5 186 39.8
AUR62023388 Chenopodium quinoa HOM05D001543 ORTHO05D001722 6.3e-15 85.1 179 39.1
FAN01G1148 Fragaria x ananassa HOM05D001543 ORTHO05D001722 6.3e-15 85.1 184 46.2
Aqoxy3G02626 Aquilegia oxysepala HOM05D001543 ORTHO05D001722 3.1e-14 82.8 179 37.4
VMungo0331G0452 Vigna mungo HOM05D001543 ORTHO05D001722 6.9e-14 81.6 179 43.0
AUR62013767 Chenopodium quinoa HOM05D001543 ORTHO05D001722 9.1e-14 81.3 184 47.3
AUR62043413 Chenopodium quinoa HOM05D001543 ORTHO05D001722 9.1e-14 81.3 184 47.3
FAN03G0838 Fragaria x ananassa HOM05D001543 ORTHO05D001722 1.2e-13 80.9 187 46.5
TAR625G0137 Trochodendron aralioides HOM05D001543 ORTHO05D001722 1.2e-13 80.9 171 35.1
arahy.Tifrunner.gnm1.ann1.B36Y9U Arachis hypogaea HOM05D001543 ORTHO05D001722 1.5e-13 80.5 179 46.4
Os04g0543200 Oryza sativa ssp. japonica HOM05D001543 ORTHO05D001722 1.5e-13 80.5 179 43.0
Dinv24173 Davidia involucrata HOM05D001543 ORTHO05D001722 2.0e-13 80.1 168 34.5
FAN06G2038 Fragaria x ananassa HOM05D001543 ORTHO05D001722 2.6e-13 79.7 196 43.4
TWI59G0607 Tripterygium wilfordii HOM05D001543 ORTHO05D001722 2.6e-13 79.7 179 40.8
Actinidia12638 Actinidia chinensis HOM05D001543 ORTHO05D001722 3.4e-13 79.3 101 45.5
arahy.Tifrunner.gnm1.ann1.SVU6LR Arachis hypogaea HOM05D001543 ORTHO05D001722 3.4e-13 79.3 179 46.9
Ah.05g177760 Amaranthus hybridus HOM05D001543 ORTHO05D001722 4.5e-13 79.0 196 44.4
Lj1g0023999 Lotus japonicus HOM05D001543 ORTHO05D001722 7.7e-13 78.2 179 43.6
Thecc.01G400300 Theobroma cacao HOM05D001543 ORTHO05D001722 7.7e-13 78.2 185 35.7
A05p04850 Brassica napus HOM05D001543 ORTHO05D001722 1.0e-12 77.8 178 32.0
BraA05t19460Z Brassica rapa HOM05D001543 ORTHO05D001722 1.0e-12 77.8 178 32.0
CiPaw.05G033300 Carya illinoinensis HOM05D001543 ORTHO05D001722 1.0e-12 77.8 151 42.4
TAR381G0730 Trochodendron aralioides HOM05D001543 ORTHO05D001722 2.2e-12 76.6 170 37.1
PSO782G5099 Papaver somniferum HOM05D001543 ORTHO05D001722 3.8e-12 75.9 101 44.6
TPR.G25979 Trifolium pratense HOM05D001543 ORTHO05D001722 5.0e-12 75.5 199 36.2
Ca_02173_v3 Cicer arietinum L. HOM05D001543 ORTHO05D001722 6.5e-12 75.1 70 54.3
Medtr7g081210 Medicago truncatula HOM05D001543 ORTHO05D001722 8.5e-12 74.7 166 47.0
PSO063G5496 Papaver somniferum HOM05D001543 ORTHO05D001722 8.5e-12 74.7 101 41.6
Medtr8g007390 Medicago truncatula HOM05D001543 ORTHO05D001722 1.1e-11 74.3 179 43.6
Psat3g099600 Pisum sativum HOM05D001543 ORTHO05D001722 1.1e-11 74.3 171 44.4
Duzib138G1252 Durio zibethinus HOM05D001543 ORTHO05D001722 1.4e-11 73.9 185 41.1
arahy.Tifrunner.gnm1.ann1.UJH74W Arachis hypogaea HOM05D001543 ORTHO05D001722 2.5e-11 73.2 180 45.0
DCAR_029504 Daucus carota HOM05D001543 ORTHO05D001722 3.2e-11 72.8 79 48.1
Aqoxy6G00733 Aquilegia oxysepala HOM05D001543 ORTHO05D001722 4.2e-11 72.4 179 32.4
arahy.Tifrunner.gnm1.ann1.RTLR0M Arachis hypogaea HOM05D001543 ORTHO05D001722 1.6e-10 70.5 180 44.4
PSO447G0063 Papaver somniferum HOM05D001543 ORTHO05D001722 1.6e-10 70.5 182 37.4
PSO210G6022 Papaver somniferum HOM05D001543 ORTHO05D001722 2.1e-10 70.1 182 36.8
SEGI_37223 Sequoiadendron giganteum HOM05D001543 ORTHO05D001722 2.1e-10 70.1 190 35.3
GSVIVG01015774001 Vitis vinifera HOM05D001543 ORTHO05D001722 2.7e-10 69.7 143 42.0
Lsat_1_v5_gn_1_84160 Lactuca sativa HOM05D001543 ORTHO05D001722 3.6e-10 69.3 180 38.9
Zm00001eb075060 Zea mays HOM05D001543 ORTHO05D001722 4.7e-10 68.9 181 40.3
Zm00001eb427780 Zea mays HOM05D001543 ORTHO05D001722 4.7e-10 68.9 74 43.2
Cfa005660 Carpinus fangiana HOM05D001543 ORTHO05D001722 6.1e-10 68.6 182 38.5
Haze_10583 Corylus avellana HOM05D001543 ORTHO05D001722 7.9e-10 68.2 182 34.1
Psat2g160240 Pisum sativum HOM05D001543 ORTHO05D001722 7.9e-10 68.2 82 42.7
QL11p022831 Quercus lobata HOM05D001543 ORTHO05D001722 1.4e-09 67.4 179 39.1
Sed0004335 Sechium edule HOM05D001543 ORTHO05D001722 5.1e-09 65.5 182 42.3
SEGI_25514 Sequoiadendron giganteum HOM05D001543 ORTHO05D001722 5.1e-09 65.5 41 70.7
MD02G1220200 Malus domestica HOM05D001543 ORTHO05D001722 6.7e-09 65.1 82 45.1
BolC4t22197H Brassica oleracea HOM05D001543 ORTHO05D001722 8.8e-09 64.7 176 38.6
Nn1g00739 Nelumbo nucifera HOM05D001543 ORTHO05D001722 8.8e-09 64.7 62 51.6
BcaB02g08849 Brassica carinata HOM05D001543 ORTHO05D001722 1.1e-08 64.3 182 31.3
C04p05680 Brassica napus HOM05D001543 ORTHO05D001722 1.1e-08 64.3 182 31.3
Dinv09009 Davidia involucrata HOM05D001543 ORTHO05D001722 2.0e-08 63.5 176 35.8
Carub.0004s2727 Capsella rubella HOM05D001543 ORTHO05D001722 3.3e-08 62.8 179 41.3
Peaxi162Scf00799g00516 Petunia axillaris HOM05D001543 ORTHO05D001722 4.4e-08 62.4 78 39.7
Zm00001eb118580 Zea mays HOM05D001543 ORTHO05D001722 7.4e-08 61.6 165 46.1
Solyc02g062290.2 Solanum lycopersicum HOM05D001543 ORTHO05D001722 2.2e-07 60.1 55 49.1
PGSC0003DMG400019934 Solanum tuberosum HOM05D001543 ORTHO05D001722 2.2e-07 60.1 55 49.1
Sopen02g013250 Solanum pennellii HOM05D001543 ORTHO05D001722 2.8e-07 59.7 55 49.1
HanXRQChr11g0333721 Helianthus annuus HOM05D001543 ORTHO05D001722 3.7e-07 59.3 70 37.1
Nitab4.5_0001133g0050 Nicotiana tabacum HOM05D001543 ORTHO05D001722 4.8e-07 58.9 55 49.1
BcaB02g08850 Brassica carinata HOM05D001543 ORTHO05D001722 6.3e-07 58.5 182 40.1
Cpa.g.sc41.80 Carica papaya HOM05D001543 ORTHO05D001722 6.3e-07 58.5 51 62.7
Nn1g05428 Nelumbo nucifera HOM05D001543 ORTHO05D001722 8.2e-07 58.2 173 38.2
SHI13633 Sapria himalayana HOM05D001543 ORTHO05D001722 8.2e-07 58.2 235 31.9
Ca_14794_v3 Cicer arietinum L. HOM05D001543 ORTHO05D001722 1.8e-06 57.0 179 42.5
Nitab4.5_0008809g0020 Nicotiana tabacum HOM05D001543 ORTHO05D001722 1.8e-06 57.0 59 49.2
Potri.005G116400 Populus trichocarpa HOM05D001543 ORTHO05D001722 1.8e-06 57.0 109 40.4
Manes.02G102500 Manihot esculenta HOM05D001543 ORTHO05D001722 2.4e-06 56.6 78 39.7
QL06p033672 Quercus lobata HOM05D001543 ORTHO05D001722 3.1e-06 56.2 69 43.5
ATR1147G046 Amborella trichopoda HOM05D001543 ORTHO05D001722 5.3e-06 55.5 72 43.1
MBI02_g33235_MAGBIO Magnolia biondii HOM05D001543 ORTHO05D001722 5.3e-06 55.5 170 38.2
CANSAT01G0915 Cannabis sativa HOM05D001543 ORTHO05D001722 7.0e-06 55.1 72 34.7
Psat4g098400 Pisum sativum HOM05D001543 ORTHO05D001722 7.0e-06 55.1 67 40.3
Nn4g26390 Nelumbo nucifera HOM05D001543 ORTHO05D001722 9.1e-06 54.7 63 42.9
Sc03g0003550 Simmondsia chinensis HOM05D001543 ORTHO05D001722 9.1e-06 54.7 44 56.8


User provided reference genes

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