Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 0.0e+00 1162.5 578 100.0
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 0.0e+00 1147.9 578 98.6
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 0.0e+00 1143.3 578 98.3
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 0.0e+00 1081.6 578 93.1
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 1.1e-307 1059.3 588 89.8
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 6.9e-307 1056.6 572 92.0
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 2.1e-300 1035.0 573 89.9
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 2.4e-267 925.2 564 81.2
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 7.7e-266 920.2 562 80.1
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 6.5e-265 917.1 577 78.7
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 3.2e-264 914.8 564 79.8
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 7.5e-261 903.7 567 79.7
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 4.1e-259 897.9 564 79.8
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 1.7e-257 892.5 564 78.5
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 2.9e-257 891.7 565 78.2
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 8.5e-257 890.2 560 78.0
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 4.2e-256 887.9 560 78.2
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 5.5e-256 887.5 564 79.3
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 3.0e-254 881.7 578 75.8
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 8.8e-254 880.2 565 77.2
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 3.4e-253 878.2 562 77.2
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 5.7e-253 877.5 565 77.3
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 7.5e-253 877.1 565 77.3
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 9.8e-253 876.7 563 76.7
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 9.8e-253 876.7 565 76.6
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 9.8e-253 876.7 565 77.0
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.8e-252 875.2 565 77.9
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.8e-252 875.2 565 77.9
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 1.8e-251 872.5 573 75.0
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 1.8e-251 872.5 560 78.4
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 9.2e-251 870.2 564 77.5
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 1.2e-250 869.8 565 75.9
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 1.2e-250 869.8 565 77.5
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 1.2e-250 869.8 560 77.3
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 4.5e-250 867.8 561 75.9
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 1.6e-247 859.4 572 75.5
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 1.6e-247 859.4 572 75.5
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.6e-247 859.4 562 77.4
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 8.0e-247 857.1 569 75.4
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 8.0e-247 857.1 564 73.9
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 3.0e-246 855.1 561 75.4
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 2.6e-245 852.0 563 74.4
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 8.3e-244 847.0 563 74.2
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 7.0e-243 844.0 565 75.0
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 4.6e-242 841.3 576 74.3
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 3.9e-241 838.2 571 72.2
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 6.6e-241 837.4 564 73.0
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 8.6e-241 837.0 574 72.0
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 1.1e-240 836.6 574 74.0
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.9e-240 835.9 566 74.6
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 3.3e-240 835.1 563 75.3
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 7.3e-240 833.9 564 73.2
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 3.6e-239 831.6 567 73.7
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 2.3e-238 828.9 563 72.6
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 5.2e-238 827.8 588 71.9
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 1.5e-237 826.2 562 74.4
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 9.8e-237 823.5 562 72.2
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 2.9e-236 822.0 550 73.8
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 2.4e-235 818.9 563 71.4
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 3.2e-235 818.5 567 72.1
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 4.1e-235 818.1 563 71.6
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 1.2e-234 816.6 565 72.2
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 2.0e-234 815.8 619 67.5
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 2.7e-234 815.5 558 73.3
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 4.6e-234 814.7 568 71.5
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 1.1e-232 810.1 595 69.9
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 5.6e-232 807.7 552 73.9
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 7.3e-232 807.4 562 71.4
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 1.1e-230 803.5 593 68.1
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 2.3e-230 802.4 562 70.8
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 1.2e-229 800.0 565 72.2
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 1.5e-229 799.7 562 71.0
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 2.0e-229 799.3 562 71.0
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 2.6e-229 798.9 565 71.3
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 4.4e-229 798.1 562 71.0
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 7.5e-229 797.3 562 71.0
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.7e-228 796.2 564 73.0
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 3.7e-228 795.0 577 70.0
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 1.7e-217 759.6 562 69.2
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 6.6e-217 757.7 457 81.4
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 3.0e-209 732.3 458 77.9
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 2.5e-208 729.2 571 66.2
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 9.9e-205 717.2 635 60.9
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 1.7e-204 716.5 571 64.4
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 2.1e-194 682.9 455 73.6
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 4.3e-192 675.2 419 80.4
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 3.2e-187 659.1 399 80.5
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 2.1e-183 646.4 643 54.4
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 3.4e-181 639.0 404 77.5
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.0e-180 637.5 415 75.4
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.9e-179 633.3 621 54.4
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 1.9e-179 633.3 621 54.4
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 7.4e-176 621.3 417 74.3
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.4e-169 600.5 421 72.0
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 2.3e-169 599.7 433 70.9
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 2.9e-164 582.8 394 74.4
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.9e-163 580.1 407 70.5
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 8.0e-154 548.1 547 53.4
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 2.3e-153 546.6 564 54.1
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 3.0e-145 519.6 304 82.6
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 3.1e-134 483.0 299 79.6
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 5.7e-128 462.2 329 69.9
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.4e-126 457.6 555 46.7
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 4.6e-117 426.0 657 39.4
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 8.9e-113 411.8 240 84.6
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 7.6e-88 328.9 198 81.3
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 4.5e-80 303.1 565 36.6
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 3.3e-75 287.0 172 83.7
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.5e-67 261.5 411 38.2
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 9.7e-59 232.3 136 80.1
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.8e-57 228.0 132 78.8
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.8e-57 228.0 146 74.0
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 4.5e-56 223.4 130 80.0
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 7.2e-46 189.5 102 88.2
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 6.1e-45 186.4 154 64.3
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 1.2e-37 162.2 104 77.9
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.5e-30 138.7 172 47.1
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 2.8e-26 124.4 66 84.8
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.8e-17 95.1 54 77.8
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 1.2e-13 82.4 442 22.9
Os08g0523850 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 5.4e-09 67.0 148 31.8
Os08g0522700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.9e-07 60.8 165 27.9
Os11g0619800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 2.5e-06 58.2 146 30.1
Os08g0523000 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.3e-06 57.8 177 24.9
Medtr7g094900 Medicago truncatula HOM05D002203 ORTHO05D002647 7.3e-06 56.6 162 28.4
Medtr7g094910 Medicago truncatula HOM05D002203 ORTHO05D002647 7.3e-06 56.6 162 28.4


User provided reference genes

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