Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.8e-55 219.2 125 100.0
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 2.1e-51 205.7 126 95.2
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 1.7e-37 159.5 116 80.2
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 8.6e-37 157.1 126 76.2
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 1.1e-36 156.8 126 77.0
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 2.1e-35 152.5 126 70.6
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.8e-35 152.1 126 74.6
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 4.7e-35 151.4 125 75.2
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.3e-34 149.1 125 73.6
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 8.9e-34 147.1 127 67.7
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 1.2e-33 146.7 122 71.3
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 3.4e-33 145.2 126 73.0
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 3.4e-33 145.2 124 69.4
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 4.4e-33 144.8 126 72.2
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.7e-32 142.9 126 72.2
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 3.7e-32 141.7 126 69.0
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 8.3e-32 140.6 125 68.8
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.1e-31 140.2 127 68.5
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 4.1e-31 138.3 127 67.7
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 7.0e-31 137.5 126 69.8
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.0e-31 137.5 126 69.8
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-30 136.7 126 69.8
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.6e-30 136.3 125 71.2
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.0e-30 136.0 126 69.0
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 2.7e-30 135.6 127 63.8
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.7e-30 135.6 125 70.4
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 3.5e-30 135.2 127 66.1
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 3.5e-30 135.2 126 65.1
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 4.5e-30 134.8 125 70.4
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.5e-30 134.8 125 70.4
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 4.5e-30 134.8 129 65.1
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 4.5e-30 134.8 127 65.4
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 7.8e-30 134.0 124 67.7
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 1.0e-29 133.7 127 64.6
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 1.0e-29 133.7 125 61.6
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 1.3e-29 133.3 126 63.5
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.3e-29 133.3 125 69.6
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 1.3e-29 133.3 126 67.5
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 1.7e-29 132.9 124 65.3
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 2.3e-29 132.5 124 63.7
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 2.3e-29 132.5 126 61.9
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 2.3e-29 132.5 120 65.8
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-29 132.1 124 66.9
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 2.9e-29 132.1 125 63.2
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 2.9e-29 132.1 119 65.5
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.0e-29 131.3 126 63.5
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 5.0e-29 131.3 119 65.5
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 6.6e-29 131.0 126 61.1
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 1.5e-28 129.8 116 62.1
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.9e-28 129.4 124 66.1
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.9e-28 129.4 124 66.1
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.5e-28 129.0 120 65.8
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 3.3e-28 128.6 125 61.6
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.3e-28 128.3 124 64.5
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 5.6e-28 127.9 125 64.0
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 7.3e-28 127.5 128 61.7
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 7.3e-28 127.5 127 64.6
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 7.3e-28 127.5 124 64.5
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 7.3e-28 127.5 128 63.3
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.5e-28 127.1 124 65.3
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 9.5e-28 127.1 124 63.7
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 9.5e-28 127.1 128 61.7
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.6e-27 126.3 124 65.3
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 2.1e-27 125.9 121 62.8
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 2.1e-27 125.9 123 60.2
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 2.1e-27 125.9 123 60.2
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 2.1e-27 125.9 127 65.4
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 2.8e-27 125.6 126 59.5
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.8e-27 125.6 128 63.3
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 2.8e-27 125.6 125 63.2
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.6e-27 125.2 124 63.7
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 3.6e-27 125.2 126 62.7
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 4.7e-27 124.8 105 68.6
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 4.7e-27 124.8 120 64.2
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.0e-26 123.6 128 62.5
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 1.4e-26 123.2 127 61.4
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 2.3e-26 122.5 125 60.8
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 3.0e-26 122.1 126 57.9
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 4.0e-26 121.7 126 59.5
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 4.0e-26 121.7 126 60.3
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 5.2e-26 121.3 126 61.1
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 5.2e-26 121.3 126 59.5
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 6.8e-26 120.9 120 60.8
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 8.9e-26 120.6 123 58.5
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 1.2e-25 120.2 126 61.1
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.5e-25 119.8 126 58.7
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 2.0e-25 119.4 126 59.5
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 2.0e-25 119.4 128 60.9
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 2.6e-25 119.0 120 60.8
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 2.6e-25 119.0 121 61.2
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 3.4e-25 118.6 128 58.6
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.4e-25 118.6 127 55.9
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 4.4e-25 118.2 126 61.1
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 4.4e-25 118.2 129 58.9
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 5.8e-25 117.9 118 59.3
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 7.5e-25 117.5 123 58.5
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 9.8e-25 117.1 94 73.4
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.7e-24 116.3 125 57.6
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 1.7e-24 116.3 126 58.7
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 2.2e-24 115.9 123 61.0
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 2.2e-24 115.9 123 61.0
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 2.9e-24 115.5 127 60.6
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 3.7e-24 115.2 125 57.6
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 4.9e-24 114.8 126 57.9
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 6.4e-24 114.4 129 56.6
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 6.4e-24 114.4 127 59.1
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 6.4e-24 114.4 125 57.6
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 8.3e-24 114.0 128 55.5
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 8.3e-24 114.0 126 56.3
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 1.1e-23 113.6 96 68.8
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 1.1e-23 113.6 125 58.4
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.9e-23 112.8 130 56.2
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 2.4e-23 112.5 126 56.3
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 3.2e-23 112.1 129 57.4
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.2e-23 112.1 125 53.6
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 3.2e-23 112.1 127 55.1
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 4.1e-23 111.7 126 58.7
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 5.4e-23 111.3 131 58.0
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 5.4e-23 111.3 127 54.3
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 7.0e-23 110.9 120 60.0
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 7.0e-23 110.9 125 56.0
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 9.2e-23 110.5 130 57.7
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 9.2e-23 110.5 130 57.7
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 9.2e-23 110.5 130 57.7
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.2e-23 110.5 95 70.5
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 1.6e-22 109.8 129 56.6
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.6e-22 109.8 130 57.7
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.6e-22 109.8 130 57.7
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.6e-22 109.8 129 57.4
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 2.0e-22 109.4 129 57.4
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 2.0e-22 109.4 129 55.8
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 2.0e-22 109.4 130 57.7
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 2.0e-22 109.4 128 56.2
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 2.7e-22 109.0 130 57.7
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 2.7e-22 109.0 123 52.8
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 7.8e-22 107.5 125 56.0
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.3e-21 105.9 129 51.2
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 3.0e-21 105.5 101 60.4
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 5.0e-21 104.8 126 54.0
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 4.3e-20 101.7 132 53.0
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 2.1e-19 99.4 126 52.4
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 8.0e-19 97.4 127 50.4
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 1.1e-18 97.1 125 53.6
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 1.1e-18 97.1 129 54.3
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 6.8e-18 94.4 119 49.6
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.2e-17 93.6 109 53.2
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 2.0e-17 92.8 124 52.4
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 1.9e-15 86.3 88 52.3
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 1.2e-14 83.6 125 44.0
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 3.5e-14 82.0 126 40.5
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 7.8e-14 80.9 126 43.7
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 7.8e-14 80.9 95 49.5
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.7e-13 79.7 105 48.6
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 3.9e-13 78.6 77 59.7
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 9.5e-12 73.9 73 60.3
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 3.1e-10 68.9 125 39.2
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 1.5e-09 66.6 125 39.2
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 1.5e-09 66.6 81 54.3
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 2.0e-09 66.2 47 78.7
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 7.5e-09 64.3 56 67.9
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 7.5e-09 64.3 128 39.8
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 6.4e-08 61.2 109 44.0
CAN.G322.45 Capsicum annuum HOM05D000224 ORTHO05D000337 3.5e-06 55.5 66 56.1


User provided reference genes

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