Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006103 Solanum tuberosum HOM05D006636 ORTHO05D008266 3.5e-43 177.9 93 100.0
Solyc09g083070.3 Solanum lycopersicum HOM05D006636 ORTHO05D008266 1.8e-15 85.9 43 97.7
Sopen09g031950 Solanum pennellii HOM05D006636 ORTHO05D008266 1.8e-15 85.9 43 97.7
CAN.G749.28 Capsicum annuum HOM05D006636 ORTHO05D008266 8.9e-15 83.6 43 95.3
Nitab4.5_0001787g0030 Nicotiana tabacum HOM05D006636 ORTHO05D008266 3.4e-14 81.6 43 93.0
Nitab4.5_0001856g0080 Nicotiana tabacum HOM05D006636 ORTHO05D008266 3.4e-14 81.6 43 93.0
Peaxi162Scf00788g00311 Petunia axillaris HOM05D006636 ORTHO05D008266 4.4e-14 81.3 43 93.0
Cc03_g04590 Coffea canephora HOM05D006636 ORTHO05D008266 4.2e-12 74.7 43 83.7
SalBow2G2841 Salvia bowleyana HOM05D006636 ORTHO05D008266 7.1e-12 73.9 46 73.9
CSS0008233 Camellia sinensis var. sinensis HOM05D006636 ORTHO05D008266 9.3e-12 73.6 46 73.9
CSS0036965 Camellia sinensis var. sinensis HOM05D006636 ORTHO05D008266 9.3e-12 73.6 46 73.9
Dinv44607 Davidia involucrata HOM05D006636 ORTHO05D008266 9.3e-12 73.6 46 71.7
Actinidia40100 Actinidia chinensis HOM05D006636 ORTHO05D008266 1.2e-11 73.2 42 81.0
Dinv14071 Davidia involucrata HOM05D006636 ORTHO05D008266 1.2e-11 73.2 46 71.7
Migut.N00229 Erythranthe guttata HOM05D006636 ORTHO05D008266 2.7e-11 72.0 43 79.1
Oeu029765.1 Olea europaea HOM05D006636 ORTHO05D008266 3.5e-11 71.6 43 76.7
Lsat_1_v5_gn_3_124880 Lactuca sativa HOM05D006636 ORTHO05D008266 4.6e-11 71.2 42 81.0
PGR142G1808 Punica granatum HOM05D006636 ORTHO05D008266 4.6e-11 71.2 46 69.6
SalBow4G0852 Salvia bowleyana HOM05D006636 ORTHO05D008266 4.6e-11 71.2 49 65.3
ECA240G3921 Erigeron canadensis HOM05D006636 ORTHO05D008266 6.0e-11 70.9 42 81.0
Atru.chr4.2290 Acer truncatum HOM05D006636 ORTHO05D008266 7.8e-11 70.5 46 73.9
PSO210G2897 Papaver somniferum HOM05D006636 ORTHO05D008266 7.8e-11 70.5 46 76.1
CiPaw.01G192900 Carya illinoinensis HOM05D006636 ORTHO05D008266 1.0e-10 70.1 46 73.9
Lalb_Chr03g0037601 Lupinus albus HOM05D006636 ORTHO05D008266 1.0e-10 70.1 46 73.9
CSS0035223 Camellia sinensis var. sinensis HOM05D006636 ORTHO05D008266 1.3e-10 69.7 46 67.4
Eucgr.H03183 Eucalyptus grandis HOM05D006636 ORTHO05D008266 1.3e-10 69.7 42 81.0
vmacro15399 Vaccinium macrocarpon HOM05D006636 ORTHO05D008266 1.3e-10 69.7 46 69.6
arahy.Tifrunner.gnm1.ann1.G1PS4Z Arachis hypogaea HOM05D006636 ORTHO05D008266 1.7e-10 69.3 46 71.7
Sabra10G0063800 Salix brachista HOM05D006636 ORTHO05D008266 1.7e-10 69.3 44 75.0
Potri.010G079100 Populus trichocarpa HOM05D006636 ORTHO05D008266 2.3e-10 68.9 59 62.7
Cfa008404 Carpinus fangiana HOM05D006636 ORTHO05D008266 3.0e-10 68.6 46 71.7
Haze_11264 Corylus avellana HOM05D006636 ORTHO05D008266 3.0e-10 68.6 43 76.7
QL06p014938 Quercus lobata HOM05D006636 ORTHO05D008266 3.0e-10 68.6 46 69.6
Thecc.04G243200 Theobroma cacao HOM05D006636 ORTHO05D008266 3.0e-10 68.6 46 67.4
Aqoxy5G00371 Aquilegia oxysepala HOM05D006636 ORTHO05D008266 3.9e-10 68.2 42 78.6
Duzib151G1121 Durio zibethinus HOM05D006636 ORTHO05D008266 3.9e-10 68.2 46 69.6
Manes.03G170500 Manihot esculenta HOM05D006636 ORTHO05D008266 3.9e-10 68.2 46 69.6
CiPaw.02G118100 Carya illinoinensis HOM05D006636 ORTHO05D008266 5.1e-10 67.8 46 67.4
Gohir.A02G035000 Gossypium hirsutum HOM05D006636 ORTHO05D008266 5.1e-10 67.8 46 69.6
Gohir.D02G041800 Gossypium hirsutum HOM05D006636 ORTHO05D008266 5.1e-10 67.8 46 69.6
Gohir.D10G147800 Gossypium hirsutum HOM05D006636 ORTHO05D008266 5.1e-10 67.8 46 69.6
Gorai.005G046200 Gossypium raimondii HOM05D006636 ORTHO05D008266 5.1e-10 67.8 46 69.6
Gorai.011G165000 Gossypium raimondii HOM05D006636 ORTHO05D008266 5.1e-10 67.8 46 69.6
Nn3g19491 Nelumbo nucifera HOM05D006636 ORTHO05D008266 5.1e-10 67.8 46 67.4
PSO832G4373 Papaver somniferum HOM05D006636 ORTHO05D008266 5.1e-10 67.8 46 73.9
unitig_26.g9474 Utricularia gibba HOM05D006636 ORTHO05D008266 5.1e-10 67.8 69 56.5
MSTRG.24709 Avicennia marina HOM05D006636 ORTHO05D008266 6.6e-10 67.4 41 75.6
CANSAT80G2460 Cannabis sativa HOM05D006636 ORTHO05D008266 6.6e-10 67.4 46 67.4
ClCG06G006590 Citrullus lanatus HOM05D006636 ORTHO05D008266 6.6e-10 67.4 42 71.4
COL.COLO4_15761 Corchorus olitorius HOM05D006636 ORTHO05D008266 6.6e-10 67.4 46 67.4
Lsat_1_v5_gn_6_37261 Lactuca sativa HOM05D006636 ORTHO05D008266 6.6e-10 67.4 42 76.2
AL7G41500 Arabidopsis lyrata HOM05D006636 ORTHO05D008266 8.7e-10 67.0 46 69.6
AT4G14615 Arabidopsis thaliana HOM05D006636 ORTHO05D008266 8.7e-10 67.0 46 69.6
BcaC07g37832 Brassica carinata HOM05D006636 ORTHO05D008266 8.7e-10 67.0 46 65.2
BolC8t48218H Brassica oleracea HOM05D006636 ORTHO05D008266 8.7e-10 67.0 46 65.2
Duzib212G0484 Durio zibethinus HOM05D006636 ORTHO05D008266 8.7e-10 67.0 46 69.6
Glyma.02G001300 Glycine max HOM05D006636 ORTHO05D008266 8.7e-10 67.0 46 69.6
RcHm_v2.0_Chr4g0388961 Rosa chinensis HOM05D006636 ORTHO05D008266 8.7e-10 67.0 46 67.4
TWI53G1752 Tripterygium wilfordii HOM05D006636 ORTHO05D008266 8.7e-10 67.0 46 69.6
TWI53G1902 Tripterygium wilfordii HOM05D006636 ORTHO05D008266 8.7e-10 67.0 46 69.6
Thhalv10026714m.g Eutrema salsugineum HOM05D006636 ORTHO05D008266 1.1e-09 66.6 46 65.2
Potri.008G160101 Populus trichocarpa HOM05D006636 ORTHO05D008266 1.1e-09 66.6 46 69.6
Sp7g12710 Schrenkiella parvula HOM05D006636 ORTHO05D008266 1.1e-09 66.6 46 65.2
Ciclev10006361m.g Citrus clementina HOM05D006636 ORTHO05D008266 1.9e-09 65.9 46 63.0
Oeu032618.1 Olea europaea HOM05D006636 ORTHO05D008266 1.9e-09 65.9 43 72.1
BcaB04g18245 Brassica carinata HOM05D006636 ORTHO05D008266 2.5e-09 65.5 46 63.0
A08p11260 Brassica napus HOM05D006636 ORTHO05D008266 2.5e-09 65.5 46 63.0
BraA08t33120Z Brassica rapa HOM05D006636 ORTHO05D008266 2.5e-09 65.5 46 63.0
Carub.0007s2759 Capsella rubella HOM05D006636 ORTHO05D008266 2.5e-09 65.5 46 69.6
CARHR220860 Cardamine hirsuta HOM05D006636 ORTHO05D008266 2.5e-09 65.5 46 67.4
Manes.15G035100 Manihot esculenta HOM05D006636 ORTHO05D008266 2.5e-09 65.5 43 69.8
Prupe.1G025800 Prunus persica HOM05D006636 ORTHO05D008266 2.5e-09 65.5 46 67.4
Aa31LG9G2720 Aethionema arabicum HOM05D006636 ORTHO05D008266 3.3e-09 65.1 46 65.2
AL1G61120 Arabidopsis lyrata HOM05D006636 ORTHO05D008266 3.3e-09 65.1 46 65.2
CARHR043050 Cardamine hirsuta HOM05D006636 ORTHO05D008266 3.3e-09 65.1 46 65.2
Thhalv10011910m.g Eutrema salsugineum HOM05D006636 ORTHO05D008266 3.3e-09 65.1 46 63.0
FAN12G3161 Fragaria x ananassa HOM05D006636 ORTHO05D008266 3.3e-09 65.1 46 63.0
FAN22G1829 Fragaria x ananassa HOM05D006636 ORTHO05D008266 3.3e-09 65.1 46 63.0
Sed0018024 Sechium edule HOM05D006636 ORTHO05D008266 3.3e-09 65.1 42 69.0
THA.LOC104808586 Tarenaya hassleriana HOM05D006636 ORTHO05D008266 3.3e-09 65.1 46 65.2
GSVIVG01018087001 Vitis vinifera HOM05D006636 ORTHO05D008266 3.3e-09 65.1 58 58.6
Gohir.A10G118900 Gossypium hirsutum HOM05D006636 ORTHO05D008266 4.3e-09 64.7 46 65.2
AUR62032843 Chenopodium quinoa HOM05D006636 ORTHO05D008266 7.3e-09 63.9 42 73.8
AT1G52825 Arabidopsis thaliana HOM05D006636 ORTHO05D008266 9.6e-09 63.5 46 63.0
EL10Ac6g13264 Beta vulgaris HOM05D006636 ORTHO05D008266 9.6e-09 63.5 42 73.8
Carub.0001s4194 Capsella rubella HOM05D006636 ORTHO05D008266 9.6e-09 63.5 42 69.0
MD13G1203300 Malus domestica HOM05D006636 ORTHO05D008266 9.6e-09 63.5 46 60.9
MD16G1204700 Malus domestica HOM05D006636 ORTHO05D008266 9.6e-09 63.5 46 60.9
Phvul.006G006400 Phaseolus vulgaris HOM05D006636 ORTHO05D008266 9.6e-09 63.5 46 67.4
Phvul.010G060600 Phaseolus vulgaris HOM05D006636 ORTHO05D008266 9.6e-09 63.5 46 67.4
Ah.03g134670 Amaranthus hybridus HOM05D006636 ORTHO05D008266 1.3e-08 63.2 42 71.4
SHI00567 Sapria himalayana HOM05D006636 ORTHO05D008266 1.3e-08 63.2 49 71.4
CDE07G1452 Ceratophyllum demersum HOM05D006636 ORTHO05D008266 1.6e-08 62.8 41 68.3
Ah.02g129360 Amaranthus hybridus HOM05D006636 ORTHO05D008266 2.1e-08 62.4 42 71.4
Ca_12203_v3 Cicer arietinum L. HOM05D006636 ORTHO05D008266 2.1e-08 62.4 47 63.8
AUR62005850 Chenopodium quinoa HOM05D006636 ORTHO05D008266 2.8e-08 62.0 42 71.4
Os07g0181800 Oryza sativa ssp. japonica HOM05D006636 ORTHO05D008266 6.2e-08 60.8 42 69.0
Hund25206 Selenicereus undatus HOM05D006636 ORTHO05D008266 6.2e-08 60.8 42 64.3
ATR0665G452 Amborella trichopoda HOM05D006636 ORTHO05D008266 8.1e-08 60.5 46 63.0
Zm00001eb116910 Zea mays HOM05D006636 ORTHO05D008266 1.4e-07 59.7 42 64.3
Lj3g0021432 Lotus japonicus HOM05D006636 ORTHO05D008266 3.1e-07 58.5 47 63.8
Psat4g201760 Pisum sativum HOM05D000716 ORTHO05D009512 3.1e-07 58.5 47 61.7
GSVIVG01002945001 Vitis vinifera HOM05D006636 ORTHO05D008266 3.1e-07 58.5 46 63.0
Hund05854 Selenicereus undatus HOM05D006636 ORTHO05D008266 4.0e-07 58.2 42 61.9
Sc22g0003980 Simmondsia chinensis HOM05D006636 ORTHO05D008266 4.0e-07 58.2 42 64.3
Psat4g152480 Pisum sativum HOM05D000716 ORTHO05D009512 5.3e-07 57.8 47 61.7
TAR365G0562 Trochodendron aralioides HOM05D006636 ORTHO05D008266 6.9e-07 57.4 46 54.3
Medtr1g040905 Medicago truncatula HOM05D006636 ORTHO05D008266 1.2e-06 56.6 47 59.6
Psat6g136920 Pisum sativum HOM05D006636 ORTHO05D008266 1.2e-06 56.6 47 59.6
TPR.G32796 Trifolium pratense HOM05D006636 ORTHO05D008266 1.2e-06 56.6 47 59.6


User provided reference genes

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