Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 4.6e-282 974.2 596 100.0
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 7.7e-253 877.1 596 92.8
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 3.2e-251 871.7 596 91.9
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 6.4e-215 751.1 610 80.8
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 4.0e-209 731.9 620 79.5
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 2.6e-208 729.2 610 78.5
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 6.0e-189 664.8 605 75.2
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 8.6e-119 431.8 614 58.3
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 4.3e-118 429.5 524 63.7
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 1.2e-117 427.9 606 58.1
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 5.8e-115 419.1 641 56.0
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 9.8e-115 418.3 606 54.8
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.4e-113 414.5 618 56.5
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.4e-113 414.5 618 56.5
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 4.1e-113 412.9 644 54.2
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 7.0e-113 412.1 562 58.2
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 2.0e-112 410.6 534 59.6
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 3.5e-112 409.8 497 63.4
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 4.6e-112 409.5 531 62.0
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 6.0e-112 409.1 580 57.4
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 1.3e-111 407.9 567 58.0
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 5.0e-111 406.0 573 57.4
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 1.1e-110 404.8 472 62.1
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 1.9e-110 404.1 492 62.0
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 5.6e-110 402.5 582 58.1
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 5.2e-108 396.0 519 59.7
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 2.2e-106 390.6 604 54.3
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 6.4e-106 389.0 596 54.7
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 1.1e-105 388.3 588 55.4
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 1.1e-105 388.3 594 55.6
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 2.4e-105 387.1 534 57.5
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 2.1e-104 384.0 534 57.7
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 2.7e-104 383.6 527 43.6
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 5.1e-103 379.4 604 53.8
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 6.6e-103 379.0 491 60.3
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 1.9e-102 377.5 604 54.6
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 4.3e-102 376.3 525 59.8
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 5.6e-102 375.9 547 58.1
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 9.5e-102 375.2 463 60.0
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 3.6e-101 373.2 618 51.3
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.7e-101 372.9 548 56.2
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 1.4e-100 371.3 613 51.4
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 2.3e-100 370.5 440 47.7
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 3.1e-100 370.2 636 51.4
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 5.2e-100 369.4 576 54.0
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 1.2e-99 368.2 440 47.5
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 1.5e-99 367.9 495 58.6
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.4e-99 366.7 531 57.6
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 3.4e-99 366.7 481 61.7
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 9.9e-99 365.2 603 53.7
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 4.9e-98 362.8 506 58.1
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 2.1e-96 357.5 615 51.4
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 2.7e-96 357.1 469 61.0
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 4.6e-96 356.3 563 56.5
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 4.6e-96 356.3 350 57.4
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 5.1e-95 352.8 614 49.0
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 1.9e-94 350.9 601 46.8
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 7.3e-94 349.0 507 56.8
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 7.3e-94 349.0 625 51.8
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 2.1e-93 347.4 513 57.5
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 6.2e-93 345.9 660 50.0
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 6.2e-93 345.9 464 59.5
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 4.0e-92 343.2 472 60.2
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 6.8e-92 342.4 479 59.3
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 1.5e-91 341.3 408 49.5
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 9.9e-91 338.6 539 53.8
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 9.3e-89 332.0 476 59.0
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 4.6e-88 329.7 593 48.6
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 1.0e-87 328.6 472 57.0
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 1.3e-87 328.2 521 54.1
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 1.2e-83 315.1 538 53.5
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 1.5e-83 314.7 609 49.9
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 9.9e-83 312.0 462 41.8
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 3.2e-81 307.0 473 55.6
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 3.9e-79 300.1 602 48.2
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 5.1e-79 299.7 605 48.3
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 6.6e-79 299.3 518 47.9
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 4.3e-78 296.6 463 55.9
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 7.3e-78 295.8 529 50.5
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 1.4e-76 291.6 566 47.0
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.4e-76 290.8 393 44.5
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 4.0e-76 290.0 597 47.1
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 2.0e-75 287.7 480 54.0
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 2.9e-74 283.9 461 55.3
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 6.4e-74 282.7 470 55.5
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 3.5e-72 276.9 554 48.7
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 3.0e-71 273.9 596 46.8
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 1.5e-70 271.6 570 47.7
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 5.6e-70 269.6 570 47.5
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 1.8e-68 264.6 509 51.7
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 9.0e-68 262.3 589 46.5
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 5.8e-67 259.6 598 46.2
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 2.2e-66 257.7 580 47.2
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 2.9e-66 257.3 583 46.3
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 2.9e-66 257.3 611 45.5
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 3.2e-65 253.8 573 47.5
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 3.2e-65 253.8 573 47.5
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 4.2e-65 253.4 579 46.3
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 6.7e-63 246.1 367 42.0
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 1.9e-62 244.6 496 33.9
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 4.3e-62 243.4 577 45.4
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 6.2e-61 239.6 492 50.4
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 6.9e-60 236.1 560 46.4
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 9.0e-60 235.7 497 33.8
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 3.4e-59 233.8 414 38.6
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 1.1e-54 218.8 581 42.9
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 2.2e-53 214.5 237 48.5
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 2.2e-50 204.5 445 45.2
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.1e-49 202.2 310 42.9
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 1.2e-48 198.7 424 33.3
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 3.9e-39 167.2 470 41.9
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 7.7e-35 152.9 370 31.4
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.9e-33 148.3 372 32.0
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 4.2e-33 147.1 195 45.6
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.4e-31 142.1 304 34.9
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 4.8e-29 133.7 305 31.8
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 4.8e-29 133.7 305 31.8
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 6.5e-26 123.2 317 30.6
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 1.5e-25 122.1 305 31.8
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 7.5e-22 109.8 299 30.1
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 5.9e-19 100.1 71 67.6
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 7.7e-19 99.8 63 74.6
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 4.0e-15 87.4 174 32.8
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 5.2e-15 87.0 142 38.7
VMungo1215G2433 Vigna mungo HOM05D004670 ORTHO05D014137 2.6e-14 84.7 70 62.9
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 5.7e-14 83.6 203 31.5
Os01g0897500 Oryza sativa ssp. japonica HOM05D004670 ORTHO05D008020 7.5e-14 83.2 61 62.3
Peaxi162Scf00301g00516 Petunia axillaris HOM05D030372 ORTHO05D025854 5.4e-12 77.0 220 32.3
Peaxi162Scf00301g00517 Petunia axillaris HOM05D030372 ORTHO05D025854 5.4e-12 77.0 220 32.3
Peaxi162Scf00301g00518 Petunia axillaris HOM05D030372 ORTHO05D025854 5.4e-12 77.0 220 32.3
Medtr1g102600 Medicago truncatula HOM05D004670 ORTHO05D266903 5.9e-11 73.6 135 33.3
Thecc.05G264500 Theobroma cacao HOM05D007661 ORTHO05D009671 2.9e-10 71.2 173 28.9
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 5.0e-10 70.5 66 53.0
Medtr5g095780 Medicago truncatula HOM05D004670 ORTHO05D008020 3.3e-09 67.8 66 45.5
Ca_09603_v3 Cicer arietinum L. HOM05D004670 ORTHO05D014137 9.5e-09 66.2 172 30.2
Oeu039630.1 Olea europaea HOM05D004670 ORTHO05D025854 1.2e-08 65.9 55 65.5
Gohir.A11G054800 Gossypium hirsutum HOM05D007661 ORTHO05D009671 2.8e-08 64.7 173 27.2
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 6.1e-08 63.5 60 45.0
QL11p020645 Quercus lobata HOM05D007661 ORTHO05D009671 2.3e-07 61.6 176 25.6
VMungo0251G1276 Vigna mungo HOM05D007661 ORTHO05D009671 3.0e-07 61.2 156 24.4
AL5G29690 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 4.0e-07 60.8 300 21.0
Aqoxy6G02961 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.5e-06 58.9 204 23.0
Phvul.002G208300 Phaseolus vulgaris HOM05D007661 ORTHO05D009671 2.0e-06 58.5 156 24.4
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 2.0e-06 58.5 200 24.0
MSTRG.10608 Avicennia marina HOM05D000424 ORTHO05D000355 4.4e-06 57.4 241 25.3
CDE04G3089 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 4.4e-06 57.4 244 22.1
Lj3P875T45 Lonicera japonica HOM05D000424 ORTHO05D000355 4.4e-06 57.4 172 29.1
Actinidia35047 Actinidia chinensis HOM05D005362 ORTHO05D006895 5.7e-06 57.0 290 20.7
Cpa.g.sc15.139 Carica papaya HOM05D004670 ORTHO05D022223 5.7e-06 57.0 231 28.6
Haze_05033 Corylus avellana HOM05D000424 ORTHO05D002854 5.7e-06 57.0 235 24.3


User provided reference genes

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