Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 7.3e-150 533.9 270 100.0
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.8e-132 476.1 272 88.6
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 8.3e-130 467.2 272 88.2
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.8e-76 290.0 260 63.5
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.3e-76 288.5 260 65.0
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.3e-66 257.3 304 52.0
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.3e-66 257.3 304 52.0
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.3e-60 235.3 305 44.6
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.6e-59 233.0 305 45.2
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.9e-58 229.6 285 50.2
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.4e-47 194.1 305 43.6
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 3.4e-46 189.5 319 40.8
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 7.0e-44 181.8 292 39.4
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 7.7e-43 178.3 288 41.7
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 2.3e-42 176.8 302 41.1
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 8.6e-42 174.9 310 39.0
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 5.6e-41 172.2 319 37.6
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 1.6e-40 170.6 308 36.7
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.4e-39 167.5 280 40.4
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.5e-38 164.1 311 37.0
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 7.5e-38 161.8 283 38.9
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 3.7e-37 159.5 306 36.9
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.4e-36 157.5 305 38.4
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.0e-36 155.2 305 38.7
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 7.8e-35 151.8 303 37.6
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 2.5e-33 146.7 316 36.4
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 7.3e-33 145.2 289 37.0
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 1.6e-32 144.1 313 36.1
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.1e-32 143.7 313 35.5
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 6.2e-32 142.1 303 36.0
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.4e-31 141.0 330 33.6
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.8e-31 140.6 322 33.5
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 4.0e-31 139.4 313 34.8
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 5.2e-31 139.0 292 35.6
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 6.8e-31 138.7 315 33.3
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.5e-30 137.5 304 36.5
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.4e-30 136.3 312 36.9
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 5.8e-30 135.6 288 35.4
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 3.7e-29 132.9 322 33.9
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 6.4e-29 132.1 304 31.2
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 8.3e-29 131.7 307 35.8
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 8.3e-29 131.7 230 39.1
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.1e-28 131.3 294 35.0
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 2.4e-28 130.2 282 35.8
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 2.4e-28 130.2 301 33.9
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 3.2e-28 129.8 321 32.4
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.2e-27 127.9 322 32.9
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 7.8e-27 125.2 300 34.0
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.7e-26 124.0 315 32.1
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.7e-26 124.0 308 33.1
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.7e-26 124.0 311 36.0
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 3.9e-26 122.9 310 34.2
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 5.0e-26 122.5 259 37.1
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 6.6e-26 122.1 310 33.9
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 8.6e-26 121.7 318 34.0
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 1.1e-25 121.3 335 32.2
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.1e-25 121.3 310 32.9
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.6e-25 119.0 311 33.4
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 2.1e-24 117.1 292 33.9
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 2.8e-24 116.7 284 35.9
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 4.7e-24 115.9 297 33.0
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 6.2e-24 115.5 299 30.1
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 8.1e-24 115.2 299 31.4
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.1e-23 114.8 304 31.6
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.1e-23 114.8 299 30.8
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.4e-23 114.4 332 31.3
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.8e-23 114.0 316 30.1
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.8e-23 114.0 314 29.3
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 3.1e-23 113.2 302 30.8
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 4.0e-23 112.8 314 29.9
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 6.8e-23 112.1 278 34.2
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 6.8e-23 112.1 305 30.2
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 8.9e-23 111.7 311 32.5
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.2e-22 111.3 302 29.8
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 3.4e-22 109.8 285 32.3
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 4.4e-22 109.4 310 28.7
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 7.5e-22 108.6 315 32.7
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.7e-21 106.3 309 29.1
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 4.9e-21 105.9 304 29.9
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 6.4e-21 105.5 311 30.2
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 8.3e-21 105.1 288 28.8
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 1.1e-20 104.8 306 31.0
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 4.1e-20 102.8 288 28.8
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 4.1e-20 102.8 247 34.4
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 9.2e-20 101.7 313 29.4
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 1.2e-19 101.3 318 27.7
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.6e-19 100.9 313 29.1
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 1.6e-19 100.9 303 30.0
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.1e-19 100.5 291 28.5
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 2.1e-19 100.5 302 28.1
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 2.7e-19 100.1 289 27.7
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 4.6e-19 99.4 308 28.9
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 6.0e-19 99.0 294 30.6
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 6.0e-19 99.0 294 30.6
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 7.8e-19 98.6 317 31.2
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.7e-18 97.4 304 30.3
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.7e-18 97.4 311 30.5
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 2.3e-18 97.1 294 29.9
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 2.3e-18 97.1 294 29.9
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 2.3e-18 97.1 266 32.3
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 3.9e-18 96.3 272 30.9
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 5.1e-18 95.9 296 30.1
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 5.1e-18 95.9 293 31.4
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 6.6e-18 95.5 298 31.5
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 8.6e-18 95.1 275 33.5
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.9e-17 94.0 308 27.6
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 1.9e-17 94.0 289 29.1
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 5.6e-17 92.4 184 34.8
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 5.6e-17 92.4 262 32.1
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.6e-16 90.9 302 29.1
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 2.8e-16 90.1 313 27.8
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 3.6e-16 89.7 297 31.0
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 6.2e-16 89.0 291 30.6
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 1.8e-15 87.4 276 33.0
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 5.2e-15 85.9 299 27.1
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.5e-14 84.3 280 30.7
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.0e-14 84.0 271 27.7
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 3.4e-14 83.2 269 28.6
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 5.8e-14 82.4 273 30.4
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 1.7e-13 80.9 232 28.4
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 2.9e-13 80.1 231 29.4
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 4.9e-13 79.3 283 27.9
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 6.4e-13 79.0 300 28.3
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 6.4e-13 79.0 172 31.4
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 8.4e-13 78.6 276 29.3
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 4.1e-12 76.3 274 30.7
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 4.1e-12 76.3 271 29.9
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 9.2e-12 75.1 267 26.2
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 9.2e-12 75.1 244 29.5
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.2e-11 74.7 247 28.7
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 2.1e-11 73.9 286 28.3
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 6.0e-11 72.4 264 29.9
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 6.0e-11 72.4 249 32.5
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 7.8e-11 72.0 260 28.8
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.0e-10 71.6 278 28.8
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.7e-10 70.9 162 33.3
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 5.1e-10 69.3 282 28.4
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 5.1e-10 69.3 282 28.4
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 6.6e-10 68.9 282 28.4
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 6.6e-10 68.9 300 29.7
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 6.6e-10 68.9 236 32.2
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.1e-09 68.2 151 33.8
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 4.3e-09 66.2 246 29.7
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.6e-08 64.3 191 31.4
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 8.1e-08 62.0 303 24.8
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 5.8e-06 55.8 70 38.6


User provided reference genes

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