Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005913 Solanum tuberosum HOM05D000843 ORTHO05D395182 1.0e-35 152.9 78 100.0
PGSC0003DMG400018067 Solanum tuberosum HOM05D000843 ORTHO05D398676 1.0e-35 152.9 78 100.0
Nitab4.5_0002184g0010 Nicotiana tabacum HOM05D000843 ORTHO05D000698 2.5e-10 68.6 100 50.0
CAN.G65.223 Capsicum annuum HOM05D000843 ORTHO05D000698 5.6e-10 67.4 98 51.0
Nitab4.5_0000271g0040 Nicotiana tabacum HOM05D000843 ORTHO05D000698 9.5e-10 66.6 100 49.0
Solyc06g073730.2 Solanum lycopersicum HOM05D000843 ORTHO05D000698 9.5e-10 66.6 98 51.0
PGSC0003DMG400005914 Solanum tuberosum HOM05D000843 ORTHO05D000698 1.2e-09 66.2 77 58.4
Sopen06g030130 Solanum pennellii HOM05D000843 ORTHO05D000698 2.8e-09 65.1 98 50.0
ECA238G0800 Erigeron canadensis HOM05D000843 ORTHO05D000698 4.0e-08 61.2 57 59.6
PGSC0003DMG400005915 Solanum tuberosum HOM05D000843 ORTHO05D000698 4.0e-08 61.2 83 50.6
CSS0042368 Camellia sinensis var. sinensis HOM05D000843 ORTHO05D000698 6.8e-08 60.5 57 63.2
Nitab4.5_0002184g0030 Nicotiana tabacum HOM05D000843 ORTHO05D000698 6.8e-08 60.5 100 47.0
Rhsim01G0196400 Rhododendron simsii HOM05D000843 ORTHO05D000698 8.9e-08 60.1 67 58.2
Dinv10728 Davidia involucrata HOM05D000843 ORTHO05D000698 1.2e-07 59.7 64 59.4
Oeu026661.1 Olea europaea HOM05D000843 ORTHO05D000698 1.2e-07 59.7 64 59.4
Actinidia22477 Actinidia chinensis HOM05D000843 ORTHO05D000698 1.5e-07 59.3 57 61.4
A03p26790 Brassica napus HOM05D000843 ORTHO05D000698 1.5e-07 59.3 68 51.5
Hma1.2p1_0218F.1_g092710 Hydrangea macrophylla HOM05D000843 ORTHO05D000698 2.0e-07 58.9 57 61.4
Nitab4.5_0000271g0110 Nicotiana tabacum HOM05D000843 ORTHO05D000698 2.0e-07 58.9 57 63.2
Cc01_g07490 Coffea canephora HOM05D000843 ORTHO05D000698 3.4e-07 58.2 57 61.4
Thhalv10001938m.g Eutrema salsugineum HOM05D000843 ORTHO05D000698 3.4e-07 58.2 69 53.6
Nitab4.5_0000428g0210 Nicotiana tabacum HOM05D000843 ORTHO05D000698 3.4e-07 58.2 57 59.6
Nitab4.5_0007649g0020 Nicotiana tabacum HOM05D000843 ORTHO05D000698 3.4e-07 58.2 57 59.6
Solyc06g073720.3 Solanum lycopersicum HOM05D000843 ORTHO05D000698 3.4e-07 58.2 101 44.6
Sopen06g030120 Solanum pennellii HOM05D000843 ORTHO05D000698 3.4e-07 58.2 101 44.6
BcaB01g03042 Brassica carinata HOM05D000843 ORTHO05D000698 4.4e-07 57.8 67 52.2
BcaC01g04919 Brassica carinata HOM05D000843 ORTHO05D000698 4.4e-07 57.8 68 51.5
C03p32120 Brassica napus HOM05D000843 ORTHO05D000698 4.4e-07 57.8 68 51.5
BolC3t15553H Brassica oleracea HOM05D000843 ORTHO05D000698 4.4e-07 57.8 68 51.5
BraA03t11890Z Brassica rapa HOM05D000843 ORTHO05D000698 4.4e-07 57.8 68 51.5
Oeu022225.1 Olea europaea HOM05D000843 ORTHO05D000698 4.4e-07 57.8 64 57.8
Peaxi162Scf00342g00073 Petunia axillaris HOM05D000843 ORTHO05D000698 4.4e-07 57.8 57 61.4
SalBow6G1804 Salvia bowleyana HOM05D000843 ORTHO05D000698 4.4e-07 57.8 64 57.8
TWI63G1341 Tripterygium wilfordii HOM05D000843 ORTHO05D000698 4.4e-07 57.8 57 59.6
Eucgr.J00631 Eucalyptus grandis HOM05D000843 ORTHO05D000698 5.8e-07 57.4 57 61.4
THA.LOC104816963 Tarenaya hassleriana HOM05D000843 ORTHO05D000698 5.8e-07 57.4 71 52.1
TWI15G0036 Tripterygium wilfordii HOM05D000843 ORTHO05D000698 5.8e-07 57.4 65 56.9
TWI38G2026 Tripterygium wilfordii HOM05D000843 ORTHO05D000698 5.8e-07 57.4 60 56.7
Actinidia22476 Actinidia chinensis HOM05D000843 ORTHO05D000698 7.5e-07 57.0 64 57.8
BolC3t17417H Brassica oleracea HOM05D000843 ORTHO05D000698 7.5e-07 57.0 66 56.1
COL.COLO4_18362 Corchorus olitorius HOM05D000843 ORTHO05D000698 7.5e-07 57.0 57 59.6
Solyc01g009170.4 Solanum lycopersicum HOM05D000843 ORTHO05D000698 7.5e-07 57.0 60 56.7
Sopen01g004640 Solanum pennellii HOM05D000843 ORTHO05D000698 7.5e-07 57.0 60 56.7
PGSC0003DMG400008712 Solanum tuberosum HOM05D000843 ORTHO05D000698 7.5e-07 57.0 60 56.7
Thecc.09G338000 Theobroma cacao HOM05D000843 ORTHO05D000698 7.5e-07 57.0 57 59.6
BraA01t03507Z Brassica rapa HOM05D000843 ORTHO05D000698 9.8e-07 56.6 67 53.7
Carub.0003s2073 Capsella rubella HOM05D000843 ORTHO05D000698 9.8e-07 56.6 69 53.6
CARHR096600 Cardamine hirsuta HOM05D000843 ORTHO05D000698 9.8e-07 56.6 64 56.2
Thhalv10020292m.g Eutrema salsugineum HOM05D000843 ORTHO05D000698 9.8e-07 56.6 69 53.6
Lalb_Chr17g0347541 Lupinus albus HOM05D000843 ORTHO05D000698 9.8e-07 56.6 75 49.3
Sp3g18790 Schrenkiella parvula HOM05D000843 ORTHO05D000698 9.8e-07 56.6 69 53.6
AT3G20770 Arabidopsis thaliana HOM05D000843 ORTHO05D000698 1.3e-06 56.2 72 52.8
BcaC09g49020 Brassica carinata HOM05D000843 ORTHO05D000698 1.3e-06 56.2 69 52.2
C01p43440 Brassica napus HOM05D000843 ORTHO05D000698 1.3e-06 56.2 69 52.2
BolC1t04303H Brassica oleracea HOM05D000843 ORTHO05D000698 1.3e-06 56.2 69 52.2
CARHR119380 Cardamine hirsuta HOM05D000843 ORTHO05D000698 1.3e-06 56.2 65 53.8
CiPaw.13G120900 Carya illinoinensis HOM05D000843 ORTHO05D000698 1.3e-06 56.2 57 57.9
Gohir.A08G196600 Gossypium hirsutum HOM05D000843 ORTHO05D000698 1.3e-06 56.2 57 59.6
Gorai.001G192700 Gossypium raimondii HOM05D000843 ORTHO05D013550 1.3e-06 56.2 56 60.7
AL3G34690 Arabidopsis lyrata HOM05D000843 ORTHO05D000698 1.7e-06 55.8 57 57.9
arahy.Tifrunner.gnm1.ann1.J729H0 Arachis hypogaea HOM05D000843 ORTHO05D000698 1.7e-06 55.8 64 56.2
arahy.Tifrunner.gnm1.ann1.S7XF8N Arachis hypogaea HOM05D000843 ORTHO05D000698 1.7e-06 55.8 64 56.2
MSTRG.18487 Avicennia marina HOM05D000843 ORTHO05D000698 1.7e-06 55.8 64 57.8
BcaB06g26147 Brassica carinata HOM05D000843 ORTHO05D000698 1.7e-06 55.8 64 56.2
Ciclev10000617m.g Citrus clementina HOM05D000843 ORTHO05D000698 1.7e-06 55.8 72 51.4
Lsat_1_v5_gn_2_35880 Lactuca sativa HOM05D000843 ORTHO05D000698 1.7e-06 55.8 57 57.9
Sp4g08230 Schrenkiella parvula HOM05D000843 ORTHO05D000698 1.7e-06 55.8 69 52.2
Sed0007953 Sechium edule HOM05D000843 ORTHO05D000698 1.7e-06 55.8 64 56.2
AL4G20610 Arabidopsis lyrata HOM05D000843 ORTHO05D000698 2.2e-06 55.5 68 48.5
AT2G27050 Arabidopsis thaliana HOM05D000843 ORTHO05D000698 2.2e-06 55.5 68 48.5
BcaC01g03540 Brassica carinata HOM05D000843 ORTHO05D000698 2.2e-06 55.5 66 54.5
C03p51280 Brassica napus HOM05D000843 ORTHO05D000698 2.2e-06 55.5 66 54.5
CsaV3_1G042150 Cucumis sativus L. HOM05D000843 ORTHO05D000698 2.2e-06 55.5 68 54.4
Dinv09388 Davidia involucrata HOM05D000843 ORTHO05D000698 2.2e-06 55.5 57 57.9
Gohir.D08G213800 Gossypium hirsutum HOM05D000843 ORTHO05D000698 2.2e-06 55.5 57 57.9
Gorai.004G227800 Gossypium raimondii HOM05D000843 ORTHO05D000698 2.2e-06 55.5 57 57.9
HanXRQChr14g0459091 Helianthus annuus HOM05D000843 ORTHO05D000698 2.2e-06 55.5 57 56.1
Manes.04G052000 Manihot esculenta HOM05D000843 ORTHO05D000698 2.2e-06 55.5 97 42.3
Peaxi162Scf00526g00042 Petunia axillaris HOM05D000843 ORTHO05D000698 2.2e-06 55.5 57 59.6
Psat2g022320 Pisum sativum HOM05D000843 ORTHO05D000698 2.2e-06 55.5 75 49.3
TPR.G22218 Trifolium pratense HOM05D000843 ORTHO05D000698 2.2e-06 55.5 75 49.3
ClCG03G014100 Citrullus lanatus HOM05D000843 ORTHO05D000698 2.9e-06 55.1 68 54.4
MELO3C015633.2 Cucumis melo HOM05D000843 ORTHO05D000698 2.9e-06 55.1 68 54.4
Gohir.D07G172550 Gossypium hirsutum HOM05D000843 ORTHO05D013550 2.9e-06 55.1 57 59.6
Potri.009G159200 Populus trichocarpa HOM05D000843 ORTHO05D000698 2.9e-06 55.1 57 57.9
Sabra09G0124500 Salix brachista HOM05D000843 ORTHO05D000698 2.9e-06 55.1 57 57.9
A03p41910 Brassica napus HOM05D000843 ORTHO05D000698 3.7e-06 54.7 66 54.5
A05p28010 Brassica napus HOM05D000843 ORTHO05D000698 3.7e-06 54.7 65 55.4
BraA03t13345Z Brassica rapa HOM05D000843 ORTHO05D000698 3.7e-06 54.7 66 54.5
BraA05t21684Z Brassica rapa HOM05D000843 ORTHO05D000698 3.7e-06 54.7 65 55.4
Glyma.20G051500 Glycine max HOM05D000843 ORTHO05D000698 3.7e-06 54.7 57 56.1
Gohir.A05G101500 Gossypium hirsutum HOM05D000843 ORTHO05D000698 3.7e-06 54.7 70 51.4
Lj2C931T8 Lonicera japonica HOM05D000843 ORTHO05D000698 3.7e-06 54.7 58 60.3
Lj6g0001407 Lotus japonicus HOM05D000843 ORTHO05D000698 3.7e-06 54.7 57 56.1
Potri.004G197400 Populus trichocarpa HOM05D000843 ORTHO05D000698 3.7e-06 54.7 70 51.4
PGR119G0809 Punica granatum HOM05D000843 ORTHO05D000698 3.7e-06 54.7 58 56.9
THA.LOC104826472 Tarenaya hassleriana HOM05D000843 ORTHO05D000698 3.7e-06 54.7 58 56.9
BcaC05g28283 Brassica carinata HOM05D000843 ORTHO05D000698 4.9e-06 54.3 58 56.9
A01p34040 Brassica napus HOM05D000843 ORTHO05D000698 4.9e-06 54.3 60 55.0
C05p43310 Brassica napus HOM05D000843 ORTHO05D000698 4.9e-06 54.3 58 56.9
BolC5t33063H Brassica oleracea HOM05D000843 ORTHO05D000698 4.9e-06 54.3 58 56.9
Duzib170G0752 Durio zibethinus HOM05D000843 ORTHO05D000698 4.9e-06 54.3 57 56.1
Glyma.14G041500 Glycine max HOM05D000843 ORTHO05D000698 4.9e-06 54.3 75 49.3
Lalb_Chr10g0105921 Lupinus albus HOM05D000843 ORTHO05D000698 4.9e-06 54.3 57 54.4
Medtr5g087790 Medicago truncatula HOM05D000843 ORTHO05D000698 4.9e-06 54.3 64 54.7
Prupe.2G070300 Prunus persica HOM05D000843 ORTHO05D013550 4.9e-06 54.3 58 53.4
THA.LOC104826471 Tarenaya hassleriana HOM05D000843 ORTHO05D000698 4.9e-06 54.3 64 56.2
MSTRG.17663 Avicennia marina HOM05D000843 ORTHO05D000698 6.4e-06 53.9 64 54.7
Cpa.g.sc103.60 Carica papaya HOM05D000843 ORTHO05D000698 6.4e-06 53.9 56 53.6
CBR_g17647 Chara braunii HOM05D000843 ORTHO05D000698 6.4e-06 53.9 56 51.8
Duzib150G0618 Durio zibethinus HOM05D000843 ORTHO05D000698 6.4e-06 53.9 57 57.9
Gohir.A03G034800 Gossypium hirsutum HOM05D000843 ORTHO05D000698 6.4e-06 53.9 57 56.1
Gohir.D03G133500 Gossypium hirsutum HOM05D000843 ORTHO05D000698 6.4e-06 53.9 57 56.1
Gorai.003G140600 Gossypium raimondii HOM05D000843 ORTHO05D000698 6.4e-06 53.9 57 56.1
Oeu032078.1 Olea europaea HOM05D000843 ORTHO05D000698 6.4e-06 53.9 79 48.1
SalBow3G0451 Salvia bowleyana HOM05D000843 ORTHO05D000698 6.4e-06 53.9 95 44.2
Atru.chr3.2868 Acer truncatum HOM05D000843 ORTHO05D000698 8.3e-06 53.5 57 57.9
Atru.chr3.2880 Acer truncatum HOM05D000843 ORTHO05D000698 8.3e-06 53.5 57 57.9
Aa31LG5G8440 Aethionema arabicum HOM05D000843 ORTHO05D000698 8.3e-06 53.5 68 52.9
CAN.G864.1 Capsicum annuum HOM05D000843 ORTHO05D000698 8.3e-06 53.5 57 56.1
CBR_g6607 Chara braunii HOM05D000843 ORTHO05D000698 8.3e-06 53.5 56 51.8
Dinv25741 Davidia involucrata HOM05D000843 ORTHO05D000698 8.3e-06 53.5 64 57.8
Gohir.D08G037301 Gossypium hirsutum HOM05D000843 ORTHO05D013550 8.3e-06 53.5 51 60.8
QL01p020207 Quercus lobata HOM05D000843 ORTHO05D000698 8.3e-06 53.5 57 56.1


User provided reference genes

Program Settings