Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 4.3e-225 784.6 488 100.0
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 2.7e-187 659.1 471 91.5
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.8e-186 656.4 478 87.2
Nitab4.5_0000875g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.4e-113 412.9 498 59.8
Nitab4.5_0013078g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.2e-112 410.2 493 59.2
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 1.4e-106 391.0 456 55.7
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 3.0e-101 373.2 469 54.8
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.1e-98 363.2 476 55.0
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.2e-97 361.3 539 49.4
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 5.4e-95 352.4 391 61.1
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 1.1e-79 301.6 374 57.0
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 1.8e-74 284.3 512 45.7
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 6.9e-74 282.3 498 44.4
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 9.0e-74 282.0 498 44.4
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 5.8e-73 279.3 441 48.3
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 1.4e-71 274.6 510 45.3
Nitab4.5_0002498g0020 Nicotiana tabacum HOM05D003229 ORTHO05D003835 2.1e-70 270.8 520 44.0
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 2.3e-69 267.3 479 46.8
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 2.5e-68 263.8 545 38.9
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 5.3e-66 256.1 484 46.9
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.4e-63 248.1 436 47.7
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 2.1e-62 244.2 432 45.4
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 6.0e-62 242.7 469 43.9
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.3e-61 241.5 452 42.9
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 3.3e-60 236.9 481 40.3
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 9.0e-58 228.8 396 47.2
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 4.5e-57 226.5 466 39.3
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 7.6e-57 225.7 515 37.3
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 7.6e-57 225.7 525 39.4
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 1.0e-56 225.3 370 41.1
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 1.3e-56 224.9 497 44.5
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 2.9e-56 223.8 463 38.9
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 2.9e-56 223.8 421 44.9
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 1.9e-55 221.1 339 49.3
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 4.2e-55 219.9 330 46.4
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 7.2e-55 219.2 515 41.4
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 4.6e-54 216.5 495 42.8
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 6.1e-54 216.1 281 52.3
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 1.3e-53 214.9 506 37.0
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 1.9e-52 211.1 360 49.2
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 7.4e-52 209.1 495 42.2
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-51 208.4 284 57.4
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 1.6e-51 208.0 489 40.7
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 3.7e-51 206.8 421 41.3
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 4.8e-51 206.5 497 42.7
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 1.1e-50 205.3 471 39.9
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.4e-50 204.9 521 42.0
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 5.3e-50 203.0 475 37.5
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 9.1e-50 202.2 429 41.3
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.9e-49 199.5 497 41.9
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 7.7e-49 199.1 491 39.3
CAN.G2071.4 Capsicum annuum HOM05D003229 ORTHO05D003835 1.7e-48 198.0 354 45.5
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 8.5e-48 195.7 328 42.4
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 1.9e-47 194.5 347 50.1
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 7.2e-47 192.6 216 55.1
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 1.6e-46 191.4 372 48.9
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 3.6e-46 190.3 478 41.2
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 4.6e-46 189.9 505 38.2
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.8e-45 188.0 490 38.0
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 2.3e-45 187.6 490 38.0
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 8.8e-45 185.7 373 39.4
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 1.1e-44 185.3 563 37.1
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 9.7e-44 182.2 293 48.8
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 8.2e-43 179.1 505 35.8
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 1.1e-42 178.7 523 35.9
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 3.1e-42 177.2 300 49.0
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 1.3e-40 171.8 390 38.2
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 5.5e-39 166.4 394 43.1
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 7.2e-39 166.0 500 36.8
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 2.1e-38 164.5 376 38.8
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 3.6e-38 163.7 440 35.9
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 5.2e-37 159.8 423 38.5
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 8.8e-37 159.1 246 42.7
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 3.3e-36 157.1 468 36.3
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 5.7e-36 156.4 501 34.5
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 5.7e-36 156.4 427 34.7
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 7.4e-36 156.0 396 42.9
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 1.7e-35 154.8 410 38.3
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 2.2e-35 154.5 449 41.4
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 2.8e-35 154.1 409 37.7
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 6.3e-35 152.9 648 30.9
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 1.4e-34 151.8 318 42.5
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 7.0e-34 149.4 195 60.0
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 9.1e-34 149.1 357 34.7
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 9.1e-34 149.1 376 45.7
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 1.6e-33 148.3 307 36.2
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 1.6e-33 148.3 138 71.0
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.6e-33 147.5 192 44.8
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 3.5e-33 147.1 549 31.9
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 4.5e-33 146.7 242 43.4
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.9e-33 146.4 636 30.7
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 1.7e-32 144.8 345 38.3
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 1.9e-31 141.4 248 41.5
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 1.9e-31 141.4 248 41.5
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 3.2e-31 140.6 204 37.3
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 9.4e-31 139.0 345 43.8
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 9.4e-31 139.0 366 36.6
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 9.4e-31 139.0 178 39.3
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.2e-30 138.7 458 34.3
CAN.G916.7 Capsicum annuum HOM05D003658 ORTHO05D003835 1.6e-30 138.3 154 54.5
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 2.7e-30 137.5 502 31.7
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 2.7e-30 137.5 646 30.8
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 6.1e-30 136.3 183 44.3
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 6.1e-30 136.3 145 55.2
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 1.4e-29 135.2 453 36.0
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 1.8e-29 134.8 525 31.0
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 1.8e-29 134.8 525 31.0
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 3.0e-29 134.0 409 41.8
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 3.0e-29 134.0 366 38.3
vmacro04054 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 4.0e-29 133.7 487 31.6
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 2.0e-28 131.3 234 38.9
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.0e-28 131.3 398 34.7
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 2.0e-28 131.3 217 46.1
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 2.6e-28 131.0 254 40.6
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 4.4e-28 130.2 271 35.8
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 5.7e-28 129.8 459 31.2
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 7.5e-28 129.4 362 43.9
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 9.7e-28 129.0 494 31.6
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 9.7e-28 129.0 125 48.0
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 1.3e-27 128.6 504 31.0
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 1.3e-27 128.6 216 38.9
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 2.2e-27 127.9 428 33.4
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 3.7e-27 127.1 401 35.9
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 5.3e-26 123.2 374 32.6
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 7.0e-26 122.9 139 43.2
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 9.1e-26 122.5 397 31.2
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 1.6e-25 121.7 268 36.6
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 1.6e-25 121.7 284 35.6
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.7e-25 120.9 198 39.9
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 7.7e-25 119.4 162 39.5
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 2.2e-24 117.9 160 53.1
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.5e-23 115.2 176 37.5
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 4.2e-23 113.6 191 44.0
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 1.6e-22 111.7 184 40.2
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 2.1e-22 111.3 467 36.4
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 4.7e-22 110.2 121 45.5
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 6.1e-22 109.8 385 30.4
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 1.4e-21 108.6 200 36.5
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 1.4e-21 108.6 372 34.1
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 2.3e-21 107.8 274 38.0
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 5.2e-21 106.7 184 34.2
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 5.2e-21 106.7 69 68.1
CAN.G1463.24 Capsicum annuum HOM05D003229 ORTHO05D003835 1.5e-20 105.1 100 63.0
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 1.5e-20 105.1 397 39.5
Prupe.6G179900 Prunus persica HOM05D003229 ORTHO05D003835 7.5e-20 102.8 286 39.2
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 1.3e-19 102.1 142 35.2
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 4.8e-19 100.1 171 38.6
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 8.3e-19 99.4 176 31.8
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 1.1e-18 99.0 154 38.3
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 2.0e-17 94.7 338 43.5
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 5.9e-17 93.2 343 40.2
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 1.0e-16 92.4 127 47.2
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 2.9e-16 90.9 165 32.1
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 4.2e-15 87.0 134 41.0
Psat5g107520 Pisum sativum HOM05D003229 ORTHO05D003835 1.6e-14 85.1 152 52.0
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.1e-14 84.7 207 37.7
BraA09t41117Z Brassica rapa HOM05D003229 ORTHO05D003835 2.8e-14 84.3 173 29.5
A09p57240 Brassica napus HOM05D003229 ORTHO05D003835 6.1e-14 83.2 136 32.4
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 5.2e-13 80.1 159 33.3
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 5.2e-13 80.1 195 42.6
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 1.5e-12 78.6 142 31.7
BcaB01g02976 Brassica carinata HOM05D003229 ORTHO05D003835 2.6e-12 77.8 151 30.5
Os11g0573200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 3.4e-12 77.4 219 44.7
BcaC07g41025 Brassica carinata HOM05D003229 ORTHO05D003835 4.4e-12 77.0 133 30.1
C08p40280 Brassica napus HOM05D003229 ORTHO05D003835 4.4e-12 77.0 133 30.1
BolC8t51596H Brassica oleracea HOM05D003229 ORTHO05D003835 4.4e-12 77.0 133 30.1
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 9.8e-12 75.9 91 39.6
C03p32850 Brassica napus HOM05D003229 ORTHO05D003835 1.7e-11 75.1 134 32.1
A03p27320 Brassica napus HOM05D003229 ORTHO05D003835 2.2e-11 74.7 155 31.6
BraA03t11943Z Brassica rapa HOM05D003229 ORTHO05D003835 2.2e-11 74.7 155 31.6
BolC3t15620H Brassica oleracea HOM05D003229 ORTHO05D003835 2.8e-11 74.3 155 29.7
Sp4g01780 Schrenkiella parvula HOM05D003229 ORTHO05D003835 4.1e-10 70.5 126 32.5
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 4.1e-10 70.5 62 46.8
EL10Ac5g11782 Beta vulgaris HOM05D003229 ORTHO05D003835 7.0e-10 69.7 188 28.2
PGSC0003DMG401021491 Solanum tuberosum HOM05D024157 ORTHO05D025896 7.0e-10 69.7 94 36.2
MBI05_g37661_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 1.2e-09 68.9 216 32.4
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 1.6e-09 68.6 55 49.1
Solyc01g056750.1 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.6e-09 68.6 62 46.8
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 1.7e-08 65.1 68 42.6
CSS0028132 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.9e-08 64.3 94 41.5
Lj2A839T58 Lonicera japonica HOM05D003229 ORTHO05D003835 3.8e-08 63.9 226 31.0
Haze_22516 Corylus avellana HOM05D003229 ORTHO05D017800 1.6e-06 58.5 104 36.5


User provided reference genes

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