Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.1e-82 308.9 149 100.0
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 3.0e-81 305.1 149 98.7
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 3.0e-81 305.1 149 98.7
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 1.8e-78 295.8 150 95.3
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.0e-76 290.0 148 93.9
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 8.5e-76 287.0 149 92.6
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 8.5e-76 287.0 148 89.2
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 2.5e-75 285.4 148 89.2
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 2.7e-74 282.0 149 89.9
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.0e-73 280.0 148 88.5
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 3.4e-72 275.0 148 87.8
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.4e-70 269.6 148 85.8
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 1.4e-70 269.6 139 89.2
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 1.3e-68 263.1 148 81.1
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 2.5e-67 258.8 146 82.2
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 3.2e-67 258.5 144 81.9
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 4.2e-67 258.1 147 81.0
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 5.2e-65 251.1 149 78.5
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 4.9e-63 244.6 149 76.5
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 8.3e-63 243.8 148 75.0
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.8e-62 242.7 148 75.7
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 9.2e-62 240.4 144 75.0
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.6e-61 239.6 144 75.0
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 2.0e-61 239.2 145 73.8
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 2.7e-61 238.8 145 75.2
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 3.5e-61 238.4 138 78.3
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 1.7e-60 236.1 149 75.8
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 1.7e-60 236.1 141 73.8
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 3.8e-60 235.0 149 73.2
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 5.0e-60 234.6 143 74.1
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 6.6e-60 234.2 144 72.9
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 6.6e-60 234.2 143 72.7
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 1.1e-59 233.4 141 73.0
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 3.3e-59 231.9 153 70.6
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 5.6e-59 231.1 147 68.7
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 7.3e-59 230.7 147 72.8
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 1.6e-58 229.6 144 70.1
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 2.1e-58 229.2 141 71.6
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 3.6e-58 228.4 141 73.8
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 6.1e-58 227.6 146 71.2
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 6.1e-58 227.6 136 74.3
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 1.4e-57 226.5 143 76.2
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 2.3e-57 225.7 148 69.6
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 3.0e-57 225.3 141 71.6
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 2.0e-56 222.6 148 70.3
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 2.0e-56 222.6 145 69.7
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 2.6e-56 222.2 142 72.5
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 1.3e-55 219.9 134 73.1
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 1.3e-55 219.9 142 69.7
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 2.2e-55 219.2 144 70.1
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 8.3e-55 217.2 141 70.9
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 1.8e-54 216.1 142 71.8
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 3.2e-54 215.3 149 69.1
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 5.4e-54 214.5 135 68.9
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 5.4e-54 214.5 141 70.2
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 7.0e-54 214.2 141 68.8
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 7.0e-54 214.2 141 68.8
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 9.2e-54 213.8 134 72.4
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 1.6e-53 213.0 147 66.0
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 2.0e-53 212.6 141 67.4
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 3.5e-53 211.8 141 69.5
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 3.5e-53 211.8 137 71.5
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 3.5e-53 211.8 141 68.1
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 7.8e-53 210.7 131 74.0
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.0e-52 210.3 137 70.1
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 1.3e-52 209.9 148 66.9
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 1.3e-52 209.9 141 68.1
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 3.0e-52 208.8 132 70.5
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 3.0e-52 208.8 140 70.7
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 5.0e-52 208.0 133 74.4
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 8.6e-52 207.2 136 68.4
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.5e-51 206.5 129 74.4
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 1.5e-51 206.5 212 51.9
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 2.5e-51 205.7 132 71.2
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.5e-51 205.7 129 72.9
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 3.3e-51 205.3 137 68.6
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 3.3e-51 205.3 129 72.9
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 3.3e-51 205.3 147 63.3
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 4.3e-51 204.9 133 66.9
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 4.3e-51 204.9 142 66.9
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 5.6e-51 204.5 134 68.7
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 7.3e-51 204.1 121 76.9
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 1.2e-50 203.4 128 75.0
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-50 203.4 132 70.5
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 1.2e-50 203.4 128 75.0
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 1.2e-50 203.4 128 75.0
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 1.2e-50 203.4 130 72.3
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.2e-50 203.4 129 72.1
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 1.2e-50 203.4 147 63.9
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.6e-50 203.0 136 65.4
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 1.6e-50 203.0 130 72.3
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 3.6e-50 201.8 132 69.7
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 4.7e-50 201.4 135 68.1
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 4.7e-50 201.4 135 68.1
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 1.1e-49 200.3 144 64.6
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.4e-49 199.9 143 58.7
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 1.8e-49 199.5 147 63.3
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 2.3e-49 199.1 154 61.0
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 4.0e-49 198.4 136 67.6
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 4.0e-49 198.4 136 67.6
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 4.0e-49 198.4 136 67.6
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 6.8e-49 197.6 143 58.0
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 5.8e-48 194.5 142 66.2
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 9.8e-48 193.7 141 61.7
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 2.2e-47 192.6 145 60.0
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 3.7e-47 191.8 128 68.0
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 1.4e-46 189.9 131 64.9
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 2.4e-46 189.1 129 69.8
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 3.2e-46 188.7 141 62.4
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 2.0e-45 186.0 141 58.2
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 1.3e-44 183.3 141 61.0
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 2.1e-42 176.0 121 65.3
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 1.2e-40 170.2 213 44.1
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 4.4e-40 168.3 126 62.7
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 2.4e-38 162.5 112 65.2
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 3.2e-38 162.2 133 57.1
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 2.5e-35 152.5 129 55.8
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 2.1e-34 149.4 134 47.8
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 6.2e-34 147.9 133 48.1
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 1.4e-33 146.7 136 46.3
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 1.7e-31 139.8 145 51.0
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 2.4e-30 136.0 80 76.2
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 2.4e-30 136.0 144 42.4
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 5.4e-30 134.8 118 50.8
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 9.2e-30 134.0 84 72.6
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 1.2e-29 133.7 120 49.2
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 4.6e-29 131.7 120 48.3
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 3.0e-28 129.0 82 72.0
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 3.9e-28 128.6 97 61.9
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 9.6e-27 124.0 114 49.1
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.6e-26 122.1 84 66.7
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 4.4e-24 115.2 95 51.6
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 5.8e-24 114.8 163 38.0
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 9.9e-24 114.0 132 40.9
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.2e-23 112.8 136 39.0
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 2.7e-21 105.9 130 39.2
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 8.7e-20 100.9 63 79.4
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 6.2e-18 94.7 60 70.0
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 8.1e-18 94.4 60 70.0
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 1.1e-17 94.0 87 54.0
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 1.1e-17 94.0 146 31.5
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 9.9e-16 87.4 131 31.3
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 9.3e-14 80.9 72 50.0
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 7.4e-11 71.2 106 34.9
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 2.9e-07 59.3 38 65.8


User provided reference genes

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