Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005890 Solanum tuberosum HOM05D005659 ORTHO05D007059 8.1e-79 297.0 146 100.0
Solyc06g074200.4 Solanum lycopersicum HOM05D005659 ORTHO05D007059 2.6e-77 292.0 146 97.3
Sopen06g030620 Solanum pennellii HOM05D005659 ORTHO05D007059 2.6e-77 292.0 146 97.3
CAN.G919.41 Capsicum annuum HOM05D005659 ORTHO05D007059 6.2e-71 270.8 146 89.0
Peaxi162Scf00091g00713 Petunia axillaris HOM05D005659 ORTHO05D007059 7.6e-69 263.8 146 84.9
Nitab4.5_0006903g0010 Nicotiana tabacum HOM05D005659 ORTHO05D007059 8.1e-63 243.8 141 81.6
Ciclev10029515m.g Citrus clementina HOM05D005659 ORTHO05D007059 1.2e-61 240.0 144 81.2
Hma1.2p1_2164F.1_g315750 Hydrangea macrophylla HOM05D005659 ORTHO05D007059 7.6e-61 237.3 146 78.1
Oeu002356.1 Olea europaea HOM05D005659 ORTHO05D007059 7.6e-61 237.3 149 79.2
DCAR_012226 Daucus carota HOM05D005659 ORTHO05D007059 4.9e-60 234.6 147 78.2
HanXRQChr04g0128561 Helianthus annuus HOM05D005659 ORTHO05D007059 8.4e-60 233.8 146 77.4
Sabra04G0134500 Salix brachista HOM05D005659 ORTHO05D007059 4.2e-59 231.5 147 76.9
Sed0025059 Sechium edule HOM05D005659 ORTHO05D007059 4.2e-59 231.5 145 77.9
Cc01_g08780 Coffea canephora HOM05D005659 ORTHO05D007059 9.3e-59 230.3 147 76.9
BcaC07g42532 Brassica carinata HOM05D005659 ORTHO05D007059 2.1e-58 229.2 149 74.5
SalBow6G0820 Salvia bowleyana HOM05D005659 ORTHO05D007059 2.7e-58 228.8 141 78.0
MSTRG.18774 Avicennia marina HOM05D005659 ORTHO05D007059 3.5e-58 228.4 141 77.3
Potri.004G199400 Populus trichocarpa HOM05D005659 ORTHO05D007059 3.5e-58 228.4 152 76.3
Cpa.g.sc195.32 Carica papaya HOM05D005659 ORTHO05D007059 4.6e-58 228.0 144 77.1
TWI75G1160 Tripterygium wilfordii HOM05D005659 ORTHO05D007059 4.6e-58 228.0 145 77.2
CARHR008270 Cardamine hirsuta HOM05D005659 ORTHO05D007059 6.0e-58 227.6 144 75.7
ECA236G2734 Erigeron canadensis HOM05D005659 ORTHO05D007059 6.0e-58 227.6 147 77.6
Cfa009983 Carpinus fangiana HOM05D005659 ORTHO05D007059 1.3e-57 226.5 144 77.1
Aa31sc785G10 Aethionema arabicum HOM05D005659 ORTHO05D007059 1.8e-57 226.1 143 74.8
BcaB07g34086 Brassica carinata HOM05D005659 ORTHO05D007059 1.8e-57 226.1 144 75.7
A09p65930 Brassica napus HOM05D005659 ORTHO05D007059 1.8e-57 226.1 149 73.2
C05p06520 Brassica napus HOM05D005659 ORTHO05D007059 1.8e-57 226.1 144 75.7
BolC5t29412H Brassica oleracea HOM05D005659 ORTHO05D007059 1.8e-57 226.1 144 75.7
BraA09t41937Z Brassica rapa HOM05D005659 ORTHO05D007059 1.8e-57 226.1 149 73.2
Atru.chr3.3161 Acer truncatum HOM05D005659 ORTHO05D007059 2.3e-57 225.7 141 76.6
CSS0022105 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 2.3e-57 225.7 146 76.0
Eucgr.B03824 Eucalyptus grandis HOM05D005659 ORTHO05D007059 3.0e-57 225.3 145 76.6
A06p05400 Brassica napus HOM05D005659 ORTHO05D007059 3.9e-57 224.9 148 75.0
BraA06t23749Z Brassica rapa HOM05D005659 ORTHO05D007059 3.9e-57 224.9 148 75.0
MBI17_g28186_MAGBIO Magnolia biondii HOM05D005659 ORTHO05D007059 3.9e-57 224.9 141 73.8
GSVIVG01036077001 Vitis vinifera HOM05D005659 ORTHO05D007059 3.9e-57 224.9 148 75.0
BolC8t52533H Brassica oleracea HOM05D005659 ORTHO05D007059 5.1e-57 224.6 149 72.5
Sp1g07030 Schrenkiella parvula HOM05D005659 ORTHO05D007059 6.7e-57 224.2 144 73.6
BcaB03g13338 Brassica carinata HOM05D005659 ORTHO05D007059 8.7e-57 223.8 144 73.6
PGR102G0055 Punica granatum HOM05D005659 ORTHO05D007059 8.7e-57 223.8 142 75.4
CsaV3_1G015100 Cucumis sativus L. HOM05D005659 ORTHO05D007059 1.1e-56 223.4 145 74.5
AT1G08380 Arabidopsis thaliana HOM05D005659 ORTHO05D007059 1.5e-56 223.0 141 74.5
BcaC07g41946 Brassica carinata HOM05D005659 ORTHO05D007059 1.5e-56 223.0 149 72.5
C08p50030 Brassica napus HOM05D005659 ORTHO05D007059 1.5e-56 223.0 149 72.5
CANSAT54G0546 Cannabis sativa HOM05D005659 ORTHO05D007059 1.5e-56 223.0 141 75.9
PSO339G3866 Papaver somniferum HOM05D005659 ORTHO05D007059 1.5e-56 223.0 147 72.8
Haze_23342 Corylus avellana HOM05D005659 ORTHO05D007059 1.9e-56 222.6 144 75.7
Carub.0001s0773 Capsella rubella HOM05D005659 ORTHO05D007059 3.3e-56 221.9 141 73.8
PSO384G5049 Papaver somniferum HOM05D005659 ORTHO05D007059 3.3e-56 221.9 147 72.8
Sc12g0004680 Simmondsia chinensis HOM05D005659 ORTHO05D007059 3.3e-56 221.9 147 73.5
MD03G1150500 Malus domestica HOM05D005659 ORTHO05D007059 5.6e-56 221.1 144 74.3
Manes.04G000900 Manihot esculenta HOM05D005659 ORTHO05D007059 5.6e-56 221.1 144 74.3
Prupe.6G137400 Prunus persica HOM05D005659 ORTHO05D007059 7.4e-56 220.7 142 77.5
Gohir.D05G082100 Gossypium hirsutum HOM05D005659 ORTHO05D007059 9.6e-56 220.3 146 74.0
MD11G1169900 Malus domestica HOM05D005659 ORTHO05D007059 9.6e-56 220.3 149 74.5
Sabra09G0125800 Salix brachista HOM05D005659 ORTHO05D007059 2.1e-55 219.2 149 72.5
CSS0045008 Camellia sinensis var. sinensis HOM05D005659 ORTHO05D007059 2.8e-55 218.8 143 74.1
Gohir.A05G079200 Gossypium hirsutum HOM05D005659 ORTHO05D007059 3.7e-55 218.4 146 73.3
Gorai.009G083700 Gossypium raimondii HOM05D005659 ORTHO05D007059 3.7e-55 218.4 146 73.3
Potri.009G160800 Populus trichocarpa HOM05D005659 ORTHO05D007059 3.7e-55 218.4 144 72.9
Thecc.09G277800 Theobroma cacao HOM05D005659 ORTHO05D007059 3.7e-55 218.4 146 74.0
Dinv22811 Davidia involucrata HOM05D005659 ORTHO05D007059 4.8e-55 218.0 119 80.7
A08p35240 Brassica napus HOM05D005659 ORTHO05D007059 8.1e-55 217.2 138 73.9
Phvul.011G096400 Phaseolus vulgaris HOM05D005659 ORTHO05D007059 1.4e-54 216.5 145 73.1
THA.LOC104826438 Tarenaya hassleriana HOM05D005659 ORTHO05D007059 1.8e-54 216.1 138 73.2
Glyma.12G092000 Glycine max HOM05D005659 ORTHO05D007059 2.4e-54 215.7 144 74.3
MELO3C025587.2 Cucumis melo HOM05D005659 ORTHO05D007059 3.1e-54 215.3 174 63.2
AL1G18790 Arabidopsis lyrata HOM05D005659 ORTHO05D007059 5.3e-54 214.5 113 83.2
arahy.Tifrunner.gnm1.ann1.QDSR7W Arachis hypogaea HOM05D005659 ORTHO05D007059 1.2e-53 213.4 145 73.1
RcHm_v2.0_Chr5g0046981 Rosa chinensis HOM05D005659 ORTHO05D007059 1.2e-53 213.4 144 73.6
SGA_v2.0_scaffold7G03995 Striga asiatica HOM05D005659 ORTHO05D007059 1.2e-53 213.4 146 73.3
CiPaw.14G097600 Carya illinoinensis HOM05D005659 ORTHO05D007059 2.0e-53 212.6 145 73.1
VMungo1127G0741 Vigna mungo HOM05D005659 ORTHO05D007059 2.0e-53 212.6 145 71.7
EL10Ac4g08175 Beta vulgaris HOM05D005659 ORTHO05D007059 4.5e-53 211.5 142 73.9
FAN21G2850 Fragaria x ananassa HOM05D005659 ORTHO05D007059 4.5e-53 211.5 143 74.1
Lj3g0027363 Lotus japonicus HOM05D005659 ORTHO05D007059 4.5e-53 211.5 145 71.0
arahy.Tifrunner.gnm1.ann1.MVQ7LV Arachis hypogaea HOM05D005659 ORTHO05D007059 9.9e-53 210.3 145 71.7
Gohir.D07G115000 Gossypium hirsutum HOM05D005659 ORTHO05D007059 9.9e-53 210.3 145 71.7
Psat7g186640 Pisum sativum HOM05D005659 ORTHO05D007059 9.9e-53 210.3 142 71.8
Actinidia37070 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.3e-52 209.9 144 73.6
Lsat_1_v5_gn_7_85921 Lactuca sativa HOM05D005659 ORTHO05D007059 1.3e-52 209.9 148 73.6
CDE08G1285 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 1.7e-52 209.5 146 68.5
FAN11G1786 Fragaria x ananassa HOM05D005659 ORTHO05D007059 2.9e-52 208.8 143 73.4
Ca_26075_v3 Cicer arietinum L. HOM05D005659 ORTHO05D007059 3.8e-52 208.4 142 70.4
FAN16G1033 Fragaria x ananassa HOM05D005659 ORTHO05D007059 3.8e-52 208.4 143 72.7
unitig_0.g1472 Utricularia gibba HOM05D005659 ORTHO05D007059 3.8e-52 208.4 138 73.2
Glyma.11G181100 Glycine max HOM05D005659 ORTHO05D007059 4.9e-52 208.0 144 71.5
Medtr4g052420 Medicago truncatula HOM05D005659 ORTHO05D007059 4.9e-52 208.0 148 70.3
CDE02G1582 Ceratophyllum demersum HOM05D005659 ORTHO05D007059 8.4e-52 207.2 146 67.1
Migut.D02409 Erythranthe guttata HOM05D005659 ORTHO05D007059 8.4e-52 207.2 113 80.5
FAN25G1572 Fragaria x ananassa HOM05D005659 ORTHO05D007059 8.4e-52 207.2 142 72.5
Gorai.001G123200 Gossypium raimondii HOM05D005659 ORTHO05D007059 1.1e-51 206.8 145 71.0
Aqoxy4G02709 Aquilegia oxysepala HOM05D005659 ORTHO05D007059 2.4e-51 205.7 146 69.2
FvH4_3g25770 Fragaria vesca HOM05D005659 ORTHO05D007059 2.4e-51 205.7 143 72.7
Lalb_Chr03g0028281 Lupinus albus HOM05D005659 ORTHO05D007059 3.2e-51 205.3 145 71.0
BraA08t35432Z Brassica rapa HOM05D005659 ORTHO05D007059 4.2e-51 204.9 138 71.7
Duzib170G0332 Durio zibethinus HOM05D005659 ORTHO05D007059 2.7e-50 202.2 141 66.7
ATR0579G079 Amborella trichopoda HOM05D005659 ORTHO05D007059 4.6e-50 201.4 139 71.9
TPR.G17220 Trifolium pratense HOM05D005659 ORTHO05D007059 6.0e-50 201.1 122 78.7
vmacro14338 Vaccinium macrocarpon HOM05D005659 ORTHO05D007059 1.0e-49 200.3 142 69.0
Actinidia35474 Actinidia chinensis HOM05D005659 ORTHO05D007059 1.1e-48 196.8 144 68.1
C08p03620 Brassica napus HOM05D005659 ORTHO05D007059 1.9e-48 196.1 116 77.6
EL10Ac4g08170 Beta vulgaris HOM05D005659 ORTHO05D007059 4.3e-48 194.9 114 78.9
HPP92_009876 Vanilla planifolia HOM05D005659 ORTHO05D007059 2.0e-45 186.0 139 65.5
SEGI_08129 Sequoiadendron giganteum HOM05D005659 ORTHO05D007059 7.6e-45 184.1 138 65.9
Pp3c15_16690 Physcomitrium patens HOM05D005659 ORTHO05D007059 1.3e-44 183.3 149 63.8
Mapoly0064s0077 Marchantia polymorpha HOM05D005659 ORTHO05D007059 2.2e-44 182.6 146 63.0
Nitab4.5_0000937g0110 Nicotiana tabacum HOM05D005659 ORTHO05D007059 2.2e-44 182.6 87 92.0
Os04g0414700 Oryza sativa ssp. japonica HOM05D005659 ORTHO05D007059 3.8e-44 181.8 137 66.4
Zm00001eb083680 Zea mays HOM05D005659 ORTHO05D007059 9.3e-43 177.2 99 80.8
Pp3c15_16700 Physcomitrium patens HOM05D005659 ORTHO05D007059 1.2e-42 176.8 140 62.9
ClCG01G011760 Citrullus lanatus HOM05D005659 ORTHO05D007059 1.6e-42 176.4 89 87.6
Nn2g14238 Nelumbo nucifera HOM05D005659 ORTHO05D007059 1.8e-41 172.9 117 72.6
QL01p011787 Quercus lobata HOM05D005659 ORTHO05D007059 1.6e-39 166.4 117 73.5
TAR633G2174 Trochodendron aralioides HOM05D005659 ORTHO05D007059 6.3e-39 164.5 119 70.6
SMO163G0051 Selaginella moellendorffii HOM05D005659 ORTHO05D007059 1.5e-37 159.8 89 78.7
BcaB03g13340 Brassica carinata HOM05D005659 ORTHO05D007059 2.2e-36 156.0 120 64.2
AUR62001528 Chenopodium quinoa HOM05D005659 ORTHO05D007059 3.2e-35 152.1 113 68.1
ATR0772G031 Amborella trichopoda HOM05D005659 ORTHO05D007059 3.9e-33 145.2 111 66.7
Nitab4.5_0005472g0080 Nicotiana tabacum HOM05D005659 ORTHO05D007059 3.9e-33 145.2 116 69.8
Hund18778 Selenicereus undatus HOM05D005659 ORTHO05D007059 2.5e-32 142.5 115 66.1
Rhsim01G0203000 Rhododendron simsii HOM05D005659 ORTHO05D007059 4.3e-32 141.7 116 64.7
unitig_88.g27645 Utricularia gibba HOM05D005659 ORTHO05D007059 2.2e-28 129.4 88 69.3
Ah.08g223250 Amaranthus hybridus HOM05D005659 ORTHO05D007059 9.4e-27 124.0 113 63.7
Thhalv10009047m.g Eutrema salsugineum HOM05D005659 ORTHO05D007059 1.6e-26 123.2 149 49.7
TAR623G1200 Trochodendron aralioides HOM05D005659 ORTHO05D007059 3.0e-25 119.0 90 70.0
Cre07.g334550 Chlamydomonas reinhardtii HOM05D005659 ORTHO05D007059 7.7e-21 104.4 125 44.8
MCO01G581 Micromonas commoda HOM05D005659 ORTHO05D007059 3.0e-17 92.4 103 40.8
Nitab4.5_0003068g0060 Nicotiana tabacum HOM05D005659 ORTHO05D007059 5.2e-17 91.7 80 63.8
Manes.11G164551 Manihot esculenta HOM05D005659 ORTHO05D007059 8.8e-17 90.9 90 55.6
Peaxi162Scf00345g01024 Petunia axillaris HOM05D005659 ORTHO05D007059 1.5e-16 90.1 155 40.6
MD11G1234000 Malus domestica HOM05D005659 ORTHO05D007059 5.5e-11 71.6 76 60.5
MD17G1209900 Malus domestica HOM05D005659 ORTHO05D007059 4.7e-10 68.6 71 59.2
Gohir.A07G111250 Gossypium hirsutum HOM05D005659 ORTHO05D007059 6.1e-10 68.2 69 58.0


User provided reference genes

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