Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 3.9e-207 725.3 627 100.0
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 1.8e-183 646.7 636 92.8
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 2.3e-183 646.4 636 92.8
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 4.9e-125 452.6 644 78.7
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 6.5e-117 425.6 665 75.0
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 6.9e-111 405.6 645 75.8
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 2.9e-101 373.6 651 72.5
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 1.8e-95 354.4 651 71.0
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 2.6e-89 334.0 653 69.7
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 1.3e-85 321.6 653 69.1
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 5.2e-82 309.7 653 68.3
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 8.8e-82 308.9 660 67.1
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.2e-81 308.5 660 67.1
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 1.7e-80 304.7 655 67.2
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 3.5e-70 270.4 661 64.9
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 1.0e-69 268.9 658 65.3
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 9.5e-68 262.3 661 63.8
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 6.4e-64 249.6 650 64.0
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 2.5e-60 237.7 647 64.0
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 3.3e-60 237.3 538 58.7
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 4.7e-59 233.4 297 48.5
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 4.4e-57 226.9 648 63.7
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.9e-55 221.5 639 63.8
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 7.8e-54 216.1 640 64.2
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 1.0e-53 215.7 648 63.6
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 3.0e-53 214.2 657 62.6
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 3.0e-53 214.2 657 62.6
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 3.0e-53 214.2 657 62.9
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 3.9e-53 213.8 297 47.1
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 8.6e-53 212.6 659 62.7
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 4.3e-52 210.3 661 62.3
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 7.3e-52 209.5 648 63.7
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.2e-51 208.8 657 62.6
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 4.7e-51 206.8 658 63.1
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 8.1e-51 206.1 292 45.9
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 5.2e-50 203.4 296 44.9
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 5.8e-49 199.9 648 62.3
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 1.3e-48 198.7 296 44.6
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 3.7e-48 197.2 649 61.5
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 8.3e-48 196.1 657 61.3
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.1e-47 195.7 296 43.9
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 7.1e-47 193.0 295 43.1
Oeu042369.1 Olea europaea HOM05D003548 ORTHO05D004066 1.2e-46 192.2 260 46.5
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 1.6e-46 191.8 298 44.0
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 6.0e-46 189.9 653 61.7
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 6.0e-46 189.9 292 42.8
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 1.0e-45 189.1 293 44.4
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 5.1e-45 186.8 656 61.6
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 5.1e-45 186.8 648 62.7
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 5.1e-45 186.8 642 61.7
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 6.6e-45 186.4 650 60.8
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 6.6e-45 186.4 651 61.4
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 8.6e-45 186.0 656 61.6
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 1.5e-44 185.3 651 61.6
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 3.3e-44 184.1 295 44.1
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 3.3e-44 184.1 291 41.9
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 4.3e-44 183.7 650 62.3
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 5.6e-44 183.3 296 41.9
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 7.3e-44 183.0 295 42.0
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 1.6e-43 181.8 296 43.2
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 4.7e-43 180.3 296 40.5
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 2.3e-42 177.9 296 41.2
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 4.0e-42 177.2 302 45.7
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 6.8e-42 176.4 293 42.3
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 2.0e-41 174.9 295 43.1
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 2.0e-41 174.9 292 43.5
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 2.6e-41 174.5 641 60.8
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 9.9e-41 172.6 296 40.5
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 9.9e-41 172.6 651 62.5
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 1.7e-40 171.8 647 61.1
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 2.2e-40 171.4 301 42.9
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 4.9e-40 170.2 297 39.7
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 1.1e-39 169.1 298 38.3
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 1.9e-39 168.3 634 62.5
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 1.9e-39 168.3 295 41.4
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 2.4e-39 167.9 660 59.4
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 7.1e-39 166.4 295 40.3
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.6e-38 165.2 295 39.7
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 6.0e-38 163.3 307 39.4
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 6.0e-38 163.3 295 38.6
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 7.8e-38 162.9 295 40.0
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.3e-37 162.2 295 39.3
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 8.6e-37 159.5 659 59.2
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 1.1e-36 159.1 660 59.4
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.5e-36 158.7 296 37.5
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 1.9e-36 158.3 299 42.8
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.5e-36 157.9 307 38.8
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 5.6e-36 156.8 291 39.5
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 8.1e-35 152.9 296 38.5
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 1.1e-34 152.5 291 38.1
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 5.2e-34 150.2 648 58.8
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 5.2e-34 150.2 292 38.4
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 6.9e-34 149.8 293 37.5
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 6.9e-34 149.8 314 38.2
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 8.9e-34 149.4 300 41.0
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 1.2e-33 149.1 297 39.4
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 1.2e-33 149.1 256 41.0
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 9.9e-33 146.0 291 38.5
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 9.9e-33 146.0 303 40.6
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 2.2e-32 144.8 646 58.7
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.9e-32 144.4 666 58.7
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 4.9e-32 143.7 314 37.9
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 8.4e-32 142.9 297 37.0
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 5.4e-31 140.2 656 58.5
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 1.6e-30 138.7 303 40.6
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 1.6e-30 138.7 295 38.0
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 2.1e-30 138.3 295 36.3
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 2.7e-30 137.9 293 36.2
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 6.0e-30 136.7 314 36.3
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 1.3e-29 135.6 303 39.3
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 3.0e-29 134.4 303 40.3
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 6.6e-29 133.3 656 58.1
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 8.7e-29 132.9 288 35.4
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 1.9e-28 131.7 203 72.9
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 2.5e-28 131.3 299 36.1
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 1.6e-27 128.6 295 34.6
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.1e-27 128.3 473 72.1
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 6.2e-27 126.7 639 57.9
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 8.1e-27 126.3 193 42.5
Cpa.g.sc321.2 Carica papaya HOM05D003548 ORTHO05D004066 1.1e-26 125.9 143 52.4
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 1.8e-26 125.2 284 35.2
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 3.1e-26 124.4 309 37.2
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 3.1e-26 124.4 309 37.2
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 4.0e-26 124.0 310 37.1
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 2.0e-25 121.7 285 34.7
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 2.0e-25 121.7 287 37.6
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 2.6e-25 121.3 128 57.8
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.4e-25 120.9 287 35.2
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.4e-25 120.9 287 35.2
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 4.5e-25 120.6 305 38.0
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 6.4e-24 116.7 251 35.1
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 1.1e-23 115.9 287 36.6
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.9e-23 115.2 628 57.8
GSVIVG01003094001 Vitis vinifera HOM05D003548 ORTHO05D004066 1.9e-23 115.2 166 46.4
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 7.1e-23 113.2 254 37.0
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 7.1e-23 113.2 292 35.6
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 9.3e-23 112.8 302 36.4
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 1.2e-22 112.5 232 37.1
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 1.6e-22 112.1 256 37.1
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 4.6e-22 110.5 232 36.6
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 1.8e-21 108.6 304 37.2
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 5.1e-21 107.1 236 36.0
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 1.1e-20 105.9 260 35.4
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 4.3e-20 104.0 654 56.0
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 8.1e-19 99.8 251 33.5
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 1.1e-18 99.4 302 32.8
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 3.1e-18 97.8 181 39.8
VMungo1215G2254 Vigna mungo HOM05D003548 ORTHO05D004066 9.0e-18 96.3 298 33.2
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 1.5e-17 95.5 277 33.9
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 3.4e-17 94.4 269 34.6
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 4.5e-17 94.0 297 33.0
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 9.9e-17 92.8 126 50.0
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 9.9e-17 92.8 309 32.7
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 2.9e-16 91.3 221 33.5
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 3.2e-15 87.8 236 33.1
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 4.2e-15 87.4 253 34.4
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 9.3e-15 86.3 270 35.6
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 1.6e-14 85.5 267 35.6
Rhsim02G0237300 Rhododendron simsii HOM05D003548 ORTHO05D004066 1.6e-14 85.5 128 44.5
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 2.1e-14 85.1 301 32.6
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 2.7e-14 84.7 303 32.7
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 4.6e-14 84.0 214 37.9
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 1.3e-13 82.4 143 42.7
BcaC04g22535 Brassica carinata HOM05D003548 ORTHO05D004066 3.0e-13 81.3 132 44.7
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 6.7e-13 80.1 301 31.9
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 6.7e-13 80.1 268 31.7
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 2.5e-12 78.2 283 34.6
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 3.3e-12 77.8 237 33.3
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 1.6e-11 75.5 232 32.8
SHI07056 Sapria himalayana HOM05D003548 ORTHO05D004066 2.1e-11 75.1 295 33.6
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 3.7e-11 74.3 298 29.5
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 3.1e-10 71.2 232 31.0
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 3.1e-10 71.2 221 36.7
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 6.9e-10 70.1 288 28.5
MBI07_g06320_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 6.9e-10 70.1 137 39.4
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 6.9e-10 70.1 214 32.7
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 9.0e-10 69.7 225 32.4
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 2.0e-09 68.6 241 30.7
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 2.6e-09 68.2 309 30.4
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 1.0e-08 66.2 309 30.4
ATR1131G034 Amborella trichopoda HOM05D003548 ORTHO05D004066 8.4e-08 63.2 306 28.4
Lj1P1010T36 Lonicera japonica HOM05D003548 ORTHO05D004066 1.1e-07 62.8 109 39.4
DCAR_020295 Daucus carota HOM05D003548 ORTHO05D004066 1.9e-07 62.0 185 30.3
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.5e-07 61.6 140 35.0
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 3.2e-07 61.2 271 28.0
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 3.5e-06 57.8 140 30.7
HanXRQChr09g0253141 Helianthus annuus HOM05D003548 ORTHO05D004066 6.0e-06 57.0 219 31.5


User provided reference genes

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