Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 1.5e-54 216.1 120 100.0
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 6.3e-53 210.7 119 98.3
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 4.1e-52 208.0 120 96.7
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.4e-47 193.0 119 89.9
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 6.7e-47 190.7 119 89.1
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.5e-43 179.5 119 84.0
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 3.8e-42 174.9 119 80.7
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 5.0e-42 174.5 146 71.2
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 6.5e-42 174.1 119 81.5
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.5e-41 171.0 120 79.2
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 5.5e-41 171.0 120 79.2
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 9.4e-41 170.2 146 69.9
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 4.7e-40 167.9 117 80.3
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 6.1e-40 167.5 119 75.6
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 7.9e-40 167.2 119 77.3
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 2.8e-37 158.7 122 74.6
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.4e-36 156.4 119 73.9
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.4e-36 156.4 119 73.9
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 7.0e-36 154.1 120 75.0
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.5e-35 152.9 120 72.5
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.9e-35 151.0 120 72.5
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 1.0e-34 150.2 120 70.0
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 1.7e-34 149.4 117 71.8
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 5.0e-34 147.9 119 69.7
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 1.9e-33 146.0 118 69.5
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.5e-33 145.6 119 69.7
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.5e-33 145.6 122 72.1
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 3.2e-33 145.2 119 69.7
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 3.2e-33 145.2 120 68.3
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 4.2e-33 144.8 120 70.8
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 5.5e-33 144.4 119 68.9
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.2e-32 143.3 113 70.8
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 1.6e-32 142.9 119 67.2
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.1e-32 142.5 120 67.5
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 3.6e-32 141.7 113 69.9
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 4.7e-32 141.4 103 76.7
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 8.0e-32 140.6 120 68.3
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 8.0e-32 140.6 120 68.3
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 1.0e-31 140.2 120 67.5
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.0e-31 140.2 123 69.9
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 1.4e-31 139.8 120 70.0
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 1.4e-31 139.8 115 70.4
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 2.3e-31 139.0 119 67.2
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.9e-31 138.3 120 65.0
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 3.9e-31 138.3 120 65.0
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 8.8e-31 137.1 120 65.8
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.1e-30 136.7 120 69.2
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 2.0e-30 136.0 120 66.7
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 2.0e-30 136.0 119 65.5
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 2.6e-30 135.6 119 67.2
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.6e-30 135.6 120 67.5
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 2.6e-30 135.6 109 68.8
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 5.7e-30 134.4 120 66.7
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.3e-29 133.3 113 66.4
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.3e-29 133.3 113 66.4
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 1.7e-29 132.9 121 62.0
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 1.7e-29 132.9 109 67.0
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.7e-29 132.9 119 63.9
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.2e-29 132.5 120 65.8
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 2.8e-29 132.1 119 63.0
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 3.7e-29 131.7 115 68.7
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 3.7e-29 131.7 119 65.5
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 6.3e-29 131.0 119 62.2
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 6.3e-29 131.0 119 63.9
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 6.3e-29 131.0 120 64.2
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 1.1e-28 130.2 121 63.6
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 1.4e-28 129.8 114 65.8
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 1.4e-28 129.8 119 66.4
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 4.1e-28 128.3 122 65.6
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 4.1e-28 128.3 122 65.6
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 4.1e-28 128.3 116 63.8
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.0e-27 125.9 119 61.3
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 2.0e-27 125.9 119 61.3
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 4.5e-27 124.8 120 62.5
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 5.9e-27 124.4 114 64.0
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 1.0e-26 123.6 119 61.3
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 3.8e-26 121.7 121 64.5
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 6.5e-26 120.9 119 61.3
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 1.5e-25 119.8 97 67.0
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.5e-25 119.8 120 60.0
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 1.9e-25 119.4 120 60.8
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 3.2e-25 118.6 119 55.5
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 7.2e-25 117.5 114 63.2
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 9.4e-25 117.1 118 57.6
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 9.4e-25 117.1 125 60.0
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 1.2e-24 116.7 116 58.6
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 2.1e-24 115.9 119 58.0
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 4.7e-24 114.8 121 57.0
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 6.1e-24 114.4 118 57.6
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 6.1e-24 114.4 119 58.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 6.1e-24 114.4 112 59.8
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.0e-23 113.6 118 56.8
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.0e-23 113.6 120 59.2
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 1.4e-23 113.2 122 58.2
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 5.2e-23 111.3 120 57.5
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 5.2e-23 111.3 120 57.5
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 5.2e-23 111.3 119 56.3
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 6.7e-23 110.9 97 63.9
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 8.8e-23 110.5 118 61.0
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 2.6e-22 109.0 136 55.1
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 4.4e-22 108.2 98 60.2
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 5.7e-22 107.8 117 56.4
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 5.7e-22 107.8 119 57.1
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 7.5e-22 107.5 121 55.4
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 1.7e-21 106.3 119 54.6
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 3.7e-21 105.1 119 55.5
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 1.1e-20 103.6 124 54.0
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.4e-20 103.2 116 56.9
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 3.1e-20 102.1 116 54.3
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 4.1e-20 101.7 124 50.8
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 4.5e-19 98.2 125 54.4
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 7.7e-19 97.4 102 56.9
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 7.7e-19 97.4 124 54.0
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 1.7e-18 96.3 111 51.4
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 9.4e-17 90.5 101 55.4
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 3.6e-16 88.6 142 47.2
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 8.0e-16 87.4 69 65.2
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.5e-14 83.2 108 48.1
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.5e-14 83.2 108 48.1
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.5e-14 83.2 108 48.1
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.0e-14 82.8 120 46.7
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 3.4e-14 82.0 116 47.4
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 1.3e-13 80.1 117 46.2
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.3e-13 80.1 122 45.1
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 1.7e-13 79.7 100 57.0
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 2.2e-13 79.3 120 43.3
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 2.2e-13 79.3 119 42.0
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 2.8e-13 79.0 107 48.6
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 3.7e-13 78.6 120 43.3
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 3.7e-13 78.6 121 45.5
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 4.8e-13 78.2 115 47.0
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 4.8e-13 78.2 120 41.7
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 4.8e-13 78.2 73 68.5
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 1.8e-12 76.3 120 42.5
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 4.1e-12 75.1 118 40.7
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.2e-11 73.6 120 45.0
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 2.7e-11 72.4 125 37.6
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 2.3e-10 69.3 66 56.1
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 1.5e-09 66.6 62 58.1
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.9e-09 66.2 42 76.2
AagrBONN_evm.TU.Sc2ySwM_344.5012 Anthoceros agrestis HOM05D028980 ORTHO05D026613 6.8e-07 57.8 93 47.3


User provided reference genes

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