Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 0.0e+00 1327.8 660 100.0
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 0.0e+00 1311.2 660 98.6
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 0.0e+00 1307.7 660 98.8
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 0.0e+00 1181.4 650 90.8
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 0.0e+00 1180.2 649 90.4
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 0.0e+00 1177.2 610 94.8
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 0.0e+00 1169.8 650 90.2
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 9.0e-295 1016.5 651 77.0
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 6.5e-285 983.8 656 74.8
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 2.5e-284 981.9 656 73.5
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 1.2e-283 979.5 663 73.9
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 1.2e-283 979.5 659 74.1
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 6.1e-283 977.2 661 73.7
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 6.1e-283 977.2 663 73.8
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 6.1e-283 977.2 649 74.7
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 6.1e-283 977.2 655 73.1
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 7.9e-283 976.9 648 73.0
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 1.8e-282 975.7 651 73.6
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 1.8e-282 975.7 608 77.6
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 4.3e-281 971.1 650 73.1
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 2.8e-280 968.4 661 72.0
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 1.1e-279 966.5 651 73.4
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.4e-279 966.1 651 73.6
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 6.9e-279 963.8 677 71.3
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 6.9e-279 963.8 651 73.4
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 9.1e-279 963.4 652 72.7
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 1.2e-278 963.0 656 72.0
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 1.2e-278 963.0 652 73.3
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 1.5e-278 962.6 652 72.9
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 1.5e-278 962.6 649 72.4
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.0e-278 962.2 651 72.4
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 4.5e-278 961.1 656 72.0
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 5.9e-278 960.7 651 72.7
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.3e-277 959.5 672 71.3
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.3e-277 959.5 658 71.9
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 6.5e-277 957.2 652 71.0
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.1e-276 956.4 650 71.4
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.4e-276 956.1 649 71.3
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 5.5e-276 954.1 658 71.3
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 2.1e-275 952.2 666 71.6
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 2.7e-275 951.8 617 74.6
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 3.6e-275 951.4 668 71.7
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 3.0e-274 948.3 658 71.3
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 8.8e-274 946.8 654 71.4
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 3.3e-273 944.9 649 71.3
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 7.4e-273 943.7 651 71.3
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 9.7e-273 943.3 651 72.5
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 1.3e-272 943.0 658 71.3
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.4e-271 938.7 651 70.7
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 4.1e-271 937.9 654 70.8
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 4.1e-271 937.9 659 71.2
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 3.5e-270 934.9 650 71.1
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 4.5e-270 934.5 654 71.4
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 7.7e-270 933.7 607 74.8
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 1.0e-269 933.3 653 72.1
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 1.0e-269 933.3 651 69.6
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 1.3e-269 932.9 623 73.4
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 8.5e-269 930.2 652 70.4
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 3.2e-268 928.3 651 70.7
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 9.4e-268 926.8 649 70.1
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 1.6e-267 926.0 653 70.6
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 2.1e-267 925.6 605 74.2
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 5.2e-266 921.0 653 69.7
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 6.7e-266 920.6 664 69.7
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 8.8e-266 920.2 653 70.6
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 2.6e-265 918.7 608 74.2
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 9.7e-265 916.8 654 70.3
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 2.2e-264 915.6 650 70.3
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.1e-263 913.3 650 69.1
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 2.4e-263 912.1 601 73.7
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 4.1e-263 911.4 603 71.8
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 7.7e-262 907.1 653 68.6
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 2.9e-261 905.2 649 69.2
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 2.9e-261 905.2 605 73.2
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 3.8e-261 904.8 654 68.2
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 6.5e-261 904.0 653 67.5
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.5e-260 902.9 659 68.9
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 3.6e-259 898.3 654 67.9
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 1.8e-258 896.0 651 68.5
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 6.8e-258 894.0 653 67.2
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 2.6e-257 892.1 604 72.0
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 2.2e-256 889.0 656 67.8
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 2.8e-256 888.6 656 67.8
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 1.4e-255 886.3 663 67.4
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 2.4e-255 885.6 603 71.6
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 4.5e-254 881.3 655 66.9
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 5.9e-254 880.9 651 67.3
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 2.9e-253 878.6 656 67.4
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 9.5e-252 873.6 657 67.0
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 7.0e-247 857.4 652 66.7
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 1.1e-244 850.1 653 65.1
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 3.4e-241 838.6 659 65.4
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 5.7e-241 837.8 714 60.1
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 1.3e-240 836.6 517 78.9
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 2.9e-240 835.5 650 64.8
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 9.2e-223 777.3 650 61.7
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 2.5e-220 769.2 517 71.6
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 4.3e-220 768.5 776 52.3
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 1.7e-216 756.5 645 60.2
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 5.4e-215 751.5 752 52.4
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.3e-213 746.1 745 52.3
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 9.3e-207 724.2 840 46.1
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 1.9e-204 716.5 814 48.3
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 4.0e-202 708.8 651 57.3
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 5.4e-199 698.4 594 59.1
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 3.5e-198 695.7 449 75.3
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 2.7e-190 669.5 454 72.0
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 8.7e-189 664.5 653 52.5
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 3.3e-172 609.4 423 70.2
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 4.8e-163 578.9 542 56.1
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 2.9e-160 569.7 547 53.7
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.2e-142 511.1 411 63.7
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 1.2e-124 451.4 311 70.1
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 5.2e-117 426.0 397 56.7
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 1.2e-108 398.3 262 74.8
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 2.9e-107 393.7 341 58.9
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 3.6e-94 350.1 236 71.6
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 1.7e-91 341.3 215 74.9
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 1.5e-87 328.2 337 51.6
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 2.9e-83 313.9 547 38.8
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 6.3e-62 243.0 151 73.5
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 1.4e-42 178.7 444 30.4
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.7e-41 174.5 139 62.6
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 6.3e-38 163.3 121 65.3
CAN.G438.117 Capsicum annuum HOM05D005975 ORTHO05D007373 5.4e-13 80.5 47 85.1
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.2e-09 69.3 49 65.3
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 2.8e-09 68.2 47 63.8
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 9.8e-07 59.7 48 62.5
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.7e-06 58.9 48 62.5
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 2.2e-06 58.5 38 71.1


User provided reference genes

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