Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005593 Solanum tuberosum HOM05D004225 ORTHO05D004728 0.0e+00 1265.0 679 100.0
Solyc01g056570.3 Solanum lycopersicum HOM05D004225 ORTHO05D004728 0.0e+00 1184.9 683 90.5
Sopen01g020500 Solanum pennellii HOM05D004225 ORTHO05D004728 0.0e+00 1172.5 683 90.3
Nitab4.5_0001355g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 0.0e+00 1080.9 682 82.3
CAN.G170.116 Capsicum annuum HOM05D004225 ORTHO05D004728 2.7e-310 1068.1 680 82.2
Peaxi162Scf00061g00247 Petunia axillaris HOM05D004225 ORTHO05D004728 7.3e-300 1033.5 685 78.7
Dinv25097 Davidia involucrata HOM05D004225 ORTHO05D004728 7.0e-226 787.7 686 62.2
Actinidia37791 Actinidia chinensis HOM05D004225 ORTHO05D004728 1.2e-217 760.4 688 59.7
Rhsim03G0054800 Rhododendron simsii HOM05D004225 ORTHO05D004728 5.0e-216 755.0 689 59.5
CSS0022490 Camellia sinensis var. sinensis HOM05D004225 ORTHO05D004728 1.6e-214 750.0 688 59.6
Cc06_g07240 Coffea canephora HOM05D004225 ORTHO05D004728 2.1e-214 749.6 687 60.7
CSS0005542 Camellia sinensis var. sinensis HOM05D004225 ORTHO05D004728 8.0e-214 747.7 688 59.6
Actinidia03947 Actinidia chinensis HOM05D004225 ORTHO05D004728 1.8e-213 746.5 689 59.5
Thecc.05G246800 Theobroma cacao HOM05D004225 ORTHO05D004728 9.8e-212 740.7 689 60.5
Prupe.7G007400 Prunus persica HOM05D004225 ORTHO05D004728 4.9e-211 738.4 693 58.7
Ca_08286_v3 Cicer arietinum L. HOM05D004225 ORTHO05D004728 6.4e-211 738.0 691 58.8
QL07p018789 Quercus lobata HOM05D004225 ORTHO05D004728 8.3e-211 737.6 688 59.2
Haze_20474 Corylus avellana HOM05D004225 ORTHO05D004728 4.1e-210 735.3 690 59.4
Duzib177G1146 Durio zibethinus HOM05D004225 ORTHO05D004728 5.4e-210 734.9 689 59.2
Atru.chr2.1407 Acer truncatum HOM05D004225 ORTHO05D004728 7.8e-209 731.1 691 59.0
Glyma.19G113700 Glycine max HOM05D004225 ORTHO05D004728 3.0e-208 729.2 691 58.3
Cfa017675 Carpinus fangiana HOM05D004225 ORTHO05D004728 8.6e-208 727.6 693 59.3
vmacro07548 Vaccinium macrocarpon HOM05D004225 ORTHO05D004728 1.9e-207 726.5 725 56.3
COL.COLO4_32974 Corchorus olitorius HOM05D004225 ORTHO05D004728 4.3e-207 725.3 688 58.9
MSTRG.5924 Avicennia marina HOM05D004225 ORTHO05D004728 2.8e-206 722.6 705 59.4
Phvul.001G113200 Phaseolus vulgaris HOM05D004225 ORTHO05D004728 3.6e-206 722.2 692 58.5
Duzib128G0769 Durio zibethinus HOM05D004225 ORTHO05D004728 1.1e-205 720.7 692 58.4
VMungo1383G3152 Vigna mungo HOM05D004225 ORTHO05D004728 6.8e-205 718.0 693 57.9
RcHm_v2.0_Chr3g0496671 Rosa chinensis HOM05D004225 ORTHO05D004728 4.4e-204 715.3 691 58.0
CiPaw.10G126100 Carya illinoinensis HOM05D004225 ORTHO05D004728 5.8e-204 714.9 689 57.6
Manes.09G139100 Manihot esculenta HOM05D004225 ORTHO05D004728 1.3e-203 713.8 688 56.8
MD12G1006900 Malus domestica HOM05D004225 ORTHO05D004728 1.7e-203 713.4 684 57.7
Gohir.D11G244200 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.2e-203 713.0 688 57.4
Medtr7g086050 Medicago truncatula HOM05D004225 ORTHO05D004728 4.9e-203 711.8 692 56.8
TAR633G0301 Trochodendron aralioides HOM05D004225 ORTHO05D004728 4.9e-203 711.8 687 57.5
Gorai.007G259700 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.4e-202 710.3 689 57.5
Gohir.A11G233000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.4e-202 709.5 688 57.4
Potri.013G055300 Populus trichocarpa HOM05D004225 ORTHO05D004728 2.7e-201 706.1 689 57.9
arahy.Tifrunner.gnm1.ann1.4I2AVL Arachis hypogaea HOM05D004225 ORTHO05D004728 4.6e-201 705.3 695 55.7
MD14G1004600 Malus domestica HOM05D004225 ORTHO05D004728 7.8e-201 704.5 683 57.7
arahy.Tifrunner.gnm1.ann1.MX8T8B Arachis hypogaea HOM05D004225 ORTHO05D004728 1.0e-200 704.1 696 56.0
SGA_v2.0_scaffold112G31648 Striga asiatica HOM05D004225 ORTHO05D004728 1.0e-200 704.1 700 56.6
Cpa.g.sc161.2 Carica papaya HOM05D004225 ORTHO05D004728 1.3e-200 703.7 689 57.2
Lalb_Chr14g0364611 Lupinus albus HOM05D004225 ORTHO05D004728 1.3e-200 703.7 689 55.4
FvH4_1g28360 Fragaria vesca HOM05D004225 ORTHO05D004728 5.1e-200 701.8 685 56.9
TWI32G0579 Tripterygium wilfordii HOM05D004225 ORTHO05D004728 6.6e-200 701.4 692 56.9
FAN23G2269 Fragaria x ananassa HOM05D004225 ORTHO05D004728 2.5e-199 699.5 682 56.9
Lj1g0011347 Lotus japonicus HOM05D004225 ORTHO05D004728 2.5e-199 699.5 688 55.8
DCAR_020662 Daucus carota HOM05D004225 ORTHO05D004728 3.3e-199 699.1 706 55.0
TWI60G0668 Tripterygium wilfordii HOM05D004225 ORTHO05D004728 4.0e-197 692.2 684 55.7
PGR042G0202 Punica granatum HOM05D004225 ORTHO05D004728 7.6e-196 688.0 690 56.5
GSVIVG01022462001 Vitis vinifera HOM05D004225 ORTHO05D004728 1.3e-195 687.2 689 57.3
SalBow3G0054 Salvia bowleyana HOM05D004225 ORTHO05D004728 2.9e-195 686.0 744 54.4
Sabra13G0049600 Salix brachista HOM05D004225 ORTHO05D004728 1.4e-194 683.7 693 57.6
CANSAT78G2348 Cannabis sativa HOM05D004225 ORTHO05D004728 3.2e-194 682.6 688 56.0
Ciclev10018636m.g Citrus clementina HOM05D004225 ORTHO05D004728 9.2e-194 681.0 691 55.7
Migut.J00760 Erythranthe guttata HOM05D004225 ORTHO05D004728 2.7e-193 679.5 705 56.3
Aqoxy1G00553 Aquilegia oxysepala HOM05D004225 ORTHO05D004728 2.3e-192 676.4 696 54.5
Sc01g0005150 Simmondsia chinensis HOM05D004225 ORTHO05D004728 9.6e-191 671.0 692 53.2
Eucgr.A02119 Eucalyptus grandis HOM05D004225 ORTHO05D004728 4.8e-190 668.7 687 54.3
Lj2A418T70 Lonicera japonica HOM05D004225 ORTHO05D004728 1.4e-189 667.2 707 54.5
FAN19G2926 Fragaria x ananassa HOM05D000495 ORTHO05D004728 1.8e-189 666.8 680 54.9
HanXRQChr14g0453121 Helianthus annuus HOM05D004225 ORTHO05D004728 1.2e-185 654.1 697 53.8
Lsat_1_v5_gn_2_103941 Lactuca sativa HOM05D004225 ORTHO05D004728 7.8e-185 651.4 717 53.0
FAN26G1663 Fragaria x ananassa HOM05D004225 ORTHO05D004728 3.0e-184 649.4 685 54.3
Nitab4.5_0022463g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 6.6e-184 648.3 442 78.7
THA.LOC104820785 Tarenaya hassleriana HOM05D004225 ORTHO05D004728 2.1e-182 643.3 696 53.3
MBI11_g07706_MAGBIO Magnolia biondii HOM05D004225 ORTHO05D004728 8.1e-182 641.3 696 53.2
Thhalv10019953m.g Eutrema salsugineum HOM05D004225 ORTHO05D004728 1.8e-181 640.2 693 51.7
CARHR077860 Cardamine hirsuta HOM05D004225 ORTHO05D004728 2.0e-180 636.7 688 53.6
PSO339G3394 Papaver somniferum HOM05D004225 ORTHO05D004728 2.6e-180 636.3 693 53.4
Aa31LG5G14340 Aethionema arabicum HOM05D004225 ORTHO05D004728 4.5e-180 635.6 685 52.7
PSO384G1703 Papaver somniferum HOM05D004225 ORTHO05D004728 9.9e-180 634.4 693 53.2
ECA238G0084 Erigeron canadensis HOM05D004225 ORTHO05D004728 6.4e-179 631.7 683 53.0
AUR62039726 Chenopodium quinoa HOM05D004225 ORTHO05D004728 1.9e-178 630.2 686 52.6
EL10Ac5g11767 Beta vulgaris HOM05D004225 ORTHO05D004728 2.4e-178 629.8 692 52.5
Sp3g02770 Schrenkiella parvula HOM05D004225 ORTHO05D004728 2.7e-177 626.3 685 52.1
BcaC05g29906 Brassica carinata HOM05D004225 ORTHO05D004728 1.0e-176 624.4 693 51.9
ClCG02G007850 Citrullus lanatus HOM05D004225 ORTHO05D004728 1.0e-176 624.4 699 52.6
AL3G13620 Arabidopsis lyrata HOM05D004225 ORTHO05D004728 5.1e-176 622.1 689 51.8
A05p43600 Brassica napus HOM05D004225 ORTHO05D004728 8.7e-176 621.3 698 51.7
Hund10817 Selenicereus undatus HOM05D004225 ORTHO05D004728 1.5e-175 620.5 681 52.3
AT3G03790 Arabidopsis thaliana HOM05D004225 ORTHO05D004728 2.5e-175 619.8 689 51.7
Sed0003216 Sechium edule HOM05D004225 ORTHO05D004728 3.3e-175 619.4 704 52.4
BolC5t34981H Brassica oleracea HOM05D004225 ORTHO05D004728 4.3e-175 619.0 688 51.9
Carub.0003s0296 Capsella rubella HOM05D004225 ORTHO05D004728 5.3e-173 612.1 696 50.7
MELO3C024751.2 Cucumis melo HOM05D004225 ORTHO05D004728 9.0e-173 611.3 699 51.6
BraA05t23099Z Brassica rapa HOM05D004225 ORTHO05D004728 1.2e-172 610.9 693 51.4
AUR62036278 Chenopodium quinoa HOM05D004225 ORTHO05D004728 1.2e-172 610.9 689 51.2
CsaV3_2G035890 Cucumis sativus L. HOM05D004225 ORTHO05D004728 5.8e-172 608.6 698 51.6
C05p63190 Brassica napus HOM05D004225 ORTHO05D004728 2.9e-171 606.3 696 51.1
unitig_27.g24735 Utricularia gibba HOM05D004225 ORTHO05D004728 2.9e-171 606.3 705 53.0
Ah.12g059700 Amaranthus hybridus HOM05D004225 ORTHO05D004728 7.1e-170 601.7 685 50.8
Zm00001eb300770 Zea mays HOM05D004225 ORTHO05D004728 2.1e-166 590.1 703 49.1
Glyma.16G038900 Glycine max HOM05D004225 ORTHO05D004728 2.4e-165 586.6 617 54.0
BcaC05g30250 Brassica carinata HOM05D004225 ORTHO05D004728 9.0e-165 584.7 702 50.1
HPP92_028052 Vanilla planifolia HOM05D004225 ORTHO05D004728 3.2e-162 576.2 692 50.1
Gohir.A13G165100 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.7e-161 573.2 682 49.1
Nn2g14481 Nelumbo nucifera HOM05D004225 ORTHO05D004728 6.3e-158 562.0 642 52.3
Dinv11924 Davidia involucrata HOM05D004225 ORTHO05D004728 2.0e-148 530.4 402 66.4
ATR0697G085 Amborella trichopoda HOM05D004225 ORTHO05D004728 2.7e-145 520.0 709 48.2
BcaC05g30283 Brassica carinata HOM05D004225 ORTHO05D004728 2.2e-142 510.4 693 46.0
Gohir.D13G168000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.6e-137 494.2 663 47.5
TPR.G31024 Trifolium pratense HOM05D004225 ORTHO05D004728 4.7e-137 492.7 403 62.0
Gorai.013G194200 Gossypium raimondii HOM05D004225 ORTHO05D004728 7.4e-135 485.3 682 46.0
SHI13905 Sapria himalayana HOM05D004225 ORTHO05D004728 2.2e-134 483.8 679 44.8
SEGI_41481 Sequoiadendron giganteum HOM05D004225 ORTHO05D004728 4.1e-133 479.6 756 41.1
Psat3g087720 Pisum sativum HOM05D004225 ORTHO05D004728 7.5e-127 458.8 403 59.6
Mapoly0082s0025 Marchantia polymorpha HOM05D004225 ORTHO05D004728 7.8e-108 395.6 764 36.5
Nitab4.5_0010528g0010 Nicotiana tabacum HOM05D004225 ORTHO05D004728 7.8e-108 395.6 223 85.7
SMO367G1027 Selaginella moellendorffii HOM05D004225 ORTHO05D004728 2.0e-100 370.9 710 35.5
CDE10G0988 Ceratophyllum demersum HOM05D004225 ORTHO05D004728 3.6e-97 360.1 400 49.5
Os07g0165200 Oryza sativa ssp. japonica HOM05D004225 ORTHO05D004728 3.2e-93 347.1 367 50.1
Pp3c8_24330 Physcomitrium patens HOM05D004225 ORTHO05D004728 2.9e-86 323.9 835 32.8
Psat3g087760 Pisum sativum HOM05D004225 ORTHO05D004728 1.6e-84 318.2 713 35.8
Psat1g054520 Pisum sativum HOM05D004225 ORTHO05D004728 1.5e-79 301.6 226 63.7
Psat3g053440 Pisum sativum HOM05D004225 ORTHO05D004728 3.8e-78 297.0 231 63.2
AagrBONN_evm.TU.Sc2ySwM_228.1834 Anthoceros agrestis HOM05D004225 ORTHO05D004728 8.4e-78 295.8 732 32.5
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 1.9e-77 294.7 221 63.3
Psat6g077720 Pisum sativum HOM05D001825 ORTHO05D004728 2.0e-71 274.6 283 51.9
TPR.G39963 Trifolium pratense HOM05D004225 ORTHO05D004728 1.1e-64 252.3 220 60.9
Oeu029553.1 Olea europaea HOM05D004225 ORTHO05D004728 4.0e-56 223.8 364 44.0
Psat2g062640 Pisum sativum HOM05D000250 ORTHO05D002477 3.7e-49 200.7 219 48.4
Zm00001eb196450 Zea mays HOM05D004225 ORTHO05D004728 1.5e-42 178.7 126 61.9
Psat3g053200 Pisum sativum HOM05D004225 ORTHO05D004728 2.6e-39 167.9 102 75.5
Gohir.A11G205501 Gossypium hirsutum HOM05D000558 ORTHO05D001857 4.1e-32 144.1 118 64.4
CBR_g37359 Chara braunii HOM05D000019 ORTHO05D000002 8.5e-30 136.3 682 26.1
Gorai.012G030100 Gossypium raimondii HOM05D004225 ORTHO05D004728 5.7e-26 123.6 75 73.3
Gohir.D11G104600 Gossypium hirsutum HOM05D004225 ORTHO05D004728 7.4e-26 123.2 75 72.0
Gorai.N008400 Gossypium raimondii HOM05D004225 ORTHO05D004728 7.4e-26 123.2 75 72.0
Gorai.011G131900 Gossypium raimondii HOM05D004225 ORTHO05D004728 9.7e-26 122.9 81 69.1
Gorai.006G065700 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.3e-25 122.5 75 70.7
Gorai.008G213700 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.7e-25 122.1 75 72.0
Gorai.007G111900 Gossypium raimondii HOM05D004225 ORTHO05D004728 2.2e-25 121.7 75 70.7
Gohir.D09G057401 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.7e-25 120.9 75 70.7
Gohir.D03G090000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.1e-24 119.4 76 71.1
Gorai.005G091800 Gossypium raimondii HOM05D004225 ORTHO05D004728 1.4e-24 119.0 75 70.7
Gohir.A04G063985 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.8e-24 118.6 81 65.4
Gohir.A11G197325 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.8e-24 118.6 81 65.4
Gohir.D02G099701 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.1e-24 117.9 76 69.7
Gohir.D02G100000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.1e-24 117.9 76 69.7
Gohir.D02G100001 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.1e-24 117.9 76 69.7
Gorai.013G083400 Gossypium raimondii HOM05D004225 ORTHO05D004728 4.1e-24 117.5 76 69.7
Gohir.D10G031000 Gossypium hirsutum HOM05D004225 ORTHO05D004728 9.1e-24 116.3 81 64.2
Gohir.D10G200650 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.2e-23 115.9 77 67.5
Gohir.A04G120200 Gossypium hirsutum HOM05D004225 ORTHO05D004728 2.0e-23 115.2 81 64.2
Gohir.A13G182600 Gossypium hirsutum HOM05D004225 ORTHO05D004728 4.5e-23 114.0 75 66.7
Gohir.D13G104300 Gossypium hirsutum HOM05D004225 ORTHO05D004728 4.5e-23 114.0 75 66.7
Gohir.D03G046700 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.7e-22 112.1 75 65.3
Gohir.D13G171500 Gossypium hirsutum HOM05D004225 ORTHO05D004728 5.0e-22 110.5 75 65.3
Gohir.D09G044750 Gossypium hirsutum HOM05D004225 ORTHO05D004728 7.2e-21 106.7 65 72.3
Psat0s5023g0080 Pisum sativum HOM05D004225 ORTHO05D004728 9.1e-16 89.7 95 57.9
Psat5g115680 Pisum sativum HOM05D004225 ORTHO05D004728 9.1e-16 89.7 95 57.9
Gohir.D10G193750 Gossypium hirsutum HOM05D004225 ORTHO05D004728 6.5e-14 83.6 50 72.0
Gorai.005G145400 Gossypium raimondii HOM05D004225 ORTHO05D004728 6.5e-14 83.6 50 72.0
Gohir.D08G141700 Gossypium hirsutum HOM05D004225 ORTHO05D004728 8.5e-14 83.2 50 72.0
Gohir.D07G139500 Gossypium hirsutum HOM05D004225 ORTHO05D004728 1.9e-13 82.0 50 70.0
Gorai.010G050700 Gossypium raimondii HOM05D004225 ORTHO05D004728 7.2e-13 80.1 48 70.8
Gohir.D08G082500 Gossypium hirsutum HOM05D001780 ORTHO05D004728 3.6e-12 77.8 51 66.7
Gohir.D13G173925 Gossypium hirsutum HOM05D004225 ORTHO05D004728 3.6e-12 77.8 51 66.7
Gorai.007G248400 Gossypium raimondii HOM05D006386 ORTHO05D007575 4.1e-08 64.3 44 59.1
MCO08G113 Micromonas commoda HOM05D004225 ORTHO05D004728 2.2e-06 58.5 249 24.9


User provided reference genes

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