Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 1.8e-84 315.8 157 100.0
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 6.5e-42 174.5 85 100.0
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 4.7e-40 168.3 85 94.1
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 5.2e-39 164.9 85 91.8
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 7.4e-38 161.0 85 89.4
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.1e-36 157.1 85 87.1
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 5.3e-36 154.8 85 84.7
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 2.6e-35 152.5 81 86.4
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 5.9e-35 151.4 85 83.5
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 1.3e-34 150.2 85 82.4
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.2e-34 149.4 85 78.8
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 2.9e-34 149.1 85 77.6
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 8.5e-34 147.5 82 81.7
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.5e-33 146.0 85 75.3
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 3.2e-33 145.6 85 75.3
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.2e-33 145.6 85 75.3
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 4.2e-33 145.2 85 80.0
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 5.5e-33 144.8 85 74.1
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 7.2e-33 144.4 81 81.5
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 7.2e-33 144.4 82 79.3
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 7.2e-33 144.4 82 78.0
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 9.4e-33 144.1 85 75.3
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 9.4e-33 144.1 85 74.1
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 9.4e-33 144.1 85 76.5
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 2.1e-32 142.9 85 74.1
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 2.7e-32 142.5 81 81.5
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 2.7e-32 142.5 81 80.2
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 3.6e-32 142.1 85 77.6
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 6.1e-32 141.4 85 74.1
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 1.0e-31 140.6 81 80.2
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 1.0e-31 140.6 85 75.3
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.4e-31 140.2 85 72.9
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.4e-31 140.2 85 74.1
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 1.4e-31 140.2 85 76.5
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.8e-31 139.8 82 79.3
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.8e-31 139.8 85 74.1
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.3e-31 139.4 85 75.3
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 2.3e-31 139.4 81 80.2
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 4.0e-31 138.7 85 75.3
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 4.0e-31 138.7 85 75.3
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 4.0e-31 138.7 85 75.3
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.0e-31 138.7 85 72.9
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 4.0e-31 138.7 85 72.9
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 4.0e-31 138.7 82 76.8
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 4.0e-31 138.7 85 74.1
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 5.2e-31 138.3 85 72.9
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 5.2e-31 138.3 82 78.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 5.2e-31 138.3 85 74.1
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.2e-31 138.3 85 72.9
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.2e-31 138.3 85 72.9
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.2e-31 138.3 85 72.9
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 5.2e-31 138.3 85 74.1
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 6.7e-31 137.9 85 75.3
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 6.7e-31 137.9 81 79.0
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 6.7e-31 137.9 81 76.5
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 8.8e-31 137.5 80 77.5
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 8.8e-31 137.5 81 77.8
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 1.2e-30 137.1 85 72.9
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.5e-30 136.7 85 71.8
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.5e-30 136.7 85 71.8
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.5e-30 136.7 85 71.8
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.5e-30 136.7 85 71.8
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.5e-30 136.7 85 71.8
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 1.5e-30 136.7 81 76.5
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 2.0e-30 136.3 85 70.6
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.0e-30 136.3 82 74.4
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.0e-30 136.3 85 74.1
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 2.0e-30 136.3 85 71.8
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 2.6e-30 136.0 82 75.6
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 2.6e-30 136.0 82 74.4
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 2.6e-30 136.0 85 70.6
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 3.3e-30 135.6 81 76.5
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 3.3e-30 135.6 81 72.8
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 4.4e-30 135.2 85 70.6
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 4.4e-30 135.2 85 69.4
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 4.4e-30 135.2 82 75.6
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 5.7e-30 134.8 85 70.6
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 5.7e-30 134.8 85 70.6
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 5.7e-30 134.8 85 70.6
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 5.7e-30 134.8 85 70.6
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 5.7e-30 134.8 85 70.6
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 5.7e-30 134.8 85 70.6
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 5.7e-30 134.8 85 70.6
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 5.7e-30 134.8 85 70.6
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 5.7e-30 134.8 85 72.9
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 5.7e-30 134.8 82 75.6
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 5.7e-30 134.8 80 75.0
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 5.7e-30 134.8 82 70.7
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 5.7e-30 134.8 82 70.7
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 5.7e-30 134.8 85 72.9
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 7.5e-30 134.4 80 77.5
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 7.5e-30 134.4 85 72.9
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 7.5e-30 134.4 82 72.0
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 9.7e-30 134.0 82 70.7
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 9.7e-30 134.0 82 70.7
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 9.7e-30 134.0 97 72.2
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 9.7e-30 134.0 101 64.4
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 1.3e-29 133.7 85 70.6
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 1.7e-29 133.3 81 75.3
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 1.7e-29 133.3 82 69.5
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 2.2e-29 132.9 85 68.2
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 2.2e-29 132.9 84 70.2
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 2.2e-29 132.9 85 71.8
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 4.8e-29 131.7 82 69.5
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 6.3e-29 131.3 82 69.5
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 1.1e-28 130.6 84 70.2
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.1e-28 130.6 82 67.1
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 2.4e-28 129.4 86 69.8
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 2.4e-28 129.4 80 72.5
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 4.1e-28 128.6 82 69.5
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 5.3e-28 128.3 85 67.1
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 5.3e-28 128.3 85 70.6
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 9.1e-28 127.5 85 67.1
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 1.2e-27 127.1 78 75.6
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 1.2e-27 127.1 80 72.5
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.6e-27 126.7 80 71.2
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 4.5e-27 125.2 106 60.4
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 7.7e-27 124.4 81 67.9
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 5.0e-26 121.7 84 65.5
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 6.5e-26 121.3 80 70.0
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 3.2e-25 119.0 81 64.2
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 1.2e-24 117.1 120 50.0
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 2.6e-22 109.4 85 61.2
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 4.1e-20 102.1 82 53.7
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 9.1e-20 100.9 122 44.3
Nitab4.5_0005266g0090 Nicotiana tabacum HOM05D039779 ORTHO05D035208 2.0e-19 99.8 75 69.3
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 4.5e-19 98.6 82 51.2
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 8.6e-18 94.4 58 81.0
Nitab4.5_0005932g0050 Nicotiana tabacum HOM05D039779 ORTHO05D035208 1.1e-17 94.0 72 65.3
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 7.2e-17 91.3 55 78.2
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 9.5e-17 90.9 83 53.0
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-16 89.7 96 45.8
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 4.7e-16 88.6 84 51.2
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 1.4e-15 87.0 77 53.2
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 4.0e-15 85.5 85 47.1
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 8.9e-15 84.3 58 69.0
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.2e-14 84.0 84 56.0
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 4.9e-13 78.6 55 63.6
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 4.9e-13 78.6 69 58.0
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 2.4e-12 76.3 81 48.1
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 1.2e-11 73.9 85 44.7
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 1.0e-10 70.9 46 65.2
COL.COLO4_08423 Corchorus olitorius HOM05D003266 ORTHO05D003718 4.3e-09 65.5 68 55.9
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 2.1e-08 63.2 70 42.9
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 2.1e-08 63.2 27 100.0
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 5.2e-07 58.5 27 88.9
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 5.2e-07 58.5 81 44.4
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 6.8e-07 58.2 71 39.4


User provided reference genes

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