Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005564 Solanum tuberosum HOM05D004542 ORTHO05D005380 1.6e-67 259.2 126 100.0
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 3.5e-30 135.2 83 85.5
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.1e-28 130.2 82 84.1
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 6.0e-22 107.8 81 65.4
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 5.6e-20 101.3 84 63.1
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.0e-18 95.1 86 60.5
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 4.0e-18 95.1 73 67.1
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 5.3e-18 94.7 70 67.1
Nitab4.5_0000014g0150 Nicotiana tabacum HOM05D004542 ORTHO05D005380 6.0e-14 81.3 70 61.4
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 1.3e-13 80.1 66 63.6
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 1.7e-13 79.7 66 63.6
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 5.6e-12 74.7 66 62.1
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 7.4e-12 74.3 66 60.6
CAN.G536.1 Capsicum annuum HOM05D006894 ORTHO05D000067 1.3e-11 73.6 53 67.9
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.8e-11 72.4 89 48.3
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.8e-11 72.4 89 48.3
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 4.8e-11 71.6 81 53.1
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 2.4e-10 69.3 65 58.5
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 5.3e-10 68.2 86 50.0
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 5.3e-10 68.2 86 44.2
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 1.2e-09 67.0 64 54.7
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 1.5e-09 66.6 71 57.7
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 2.0e-09 66.2 69 56.5
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 2.6e-09 65.9 67 56.7
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 2.6e-09 65.9 85 47.1
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 4.5e-09 65.1 70 55.7
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 9.9e-09 63.9 86 48.8
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 1.3e-08 63.5 69 55.1
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 3.8e-08 62.0 86 50.0
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 3.8e-08 62.0 86 50.0
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 3.8e-08 62.0 74 52.7
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 4.9e-08 61.6 86 44.2
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 6.4e-08 61.2 88 47.7
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 6.4e-08 61.2 70 45.7
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 6.4e-08 61.2 83 48.2
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 8.4e-08 60.8 69 46.4
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 8.4e-08 60.8 66 54.5
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 1.4e-07 60.1 72 51.4
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 1.4e-07 60.1 66 50.0
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 1.9e-07 59.7 70 52.9
DCAR_027429 Daucus carota HOM05D004542 ORTHO05D005380 1.9e-07 59.7 73 45.2
vmacro01351 Vaccinium macrocarpon HOM05D004542 ORTHO05D005380 4.2e-07 58.5 83 45.8
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 5.5e-07 58.2 67 56.7
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 5.5e-07 58.2 74 43.2
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 7.1e-07 57.8 70 48.6
SalBow1G0501 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.1e-07 57.8 74 43.2
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 9.3e-07 57.4 68 52.9
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.2e-06 57.0 68 50.0
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 1.2e-06 57.0 70 48.6
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 1.2e-06 57.0 72 48.6
Sabra10G0125700 Salix brachista HOM05D004542 ORTHO05D005380 1.2e-06 57.0 70 42.9
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.6e-06 56.6 71 47.9
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 2.7e-06 55.8 69 52.2
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 2.7e-06 55.8 84 44.0
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 2.7e-06 55.8 84 44.0
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 2.7e-06 55.8 71 47.9
SalBow1G4992 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.7e-06 55.8 74 41.9
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 2.7e-06 55.8 70 47.1
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 3.5e-06 55.5 71 49.3
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 4.6e-06 55.1 69 46.4
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 6.0e-06 54.7 69 52.2
SalBow1G3820 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.0e-06 54.7 74 40.5
SalBow1G6948 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.0e-06 54.7 75 40.0
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 7.9e-06 54.3 73 46.6
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 7.9e-06 54.3 73 46.6
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 7.9e-06 54.3 64 50.0
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 7.9e-06 54.3 67 53.7
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 7.9e-06 54.3 67 53.7
SalBow1G0857 Salvia bowleyana HOM05D004542 ORTHO05D005380 7.9e-06 54.3 74 40.5


User provided reference genes

Program Settings