Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 0.0e+00 1103.2 558 100.0
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 1.1e-311 1072.4 562 97.2
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.9e-311 1071.6 562 96.8
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 5.7e-282 973.8 563 88.3
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.4e-277 959.1 567 87.5
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.0e-267 926.4 566 85.3
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 5.7e-266 920.6 555 84.7
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 2.1e-228 795.8 522 75.7
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 1.4e-227 793.1 521 75.6
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 6.8e-227 790.8 565 73.1
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 4.4e-226 788.1 559 72.6
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 4.4e-226 788.1 559 72.6
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 7.5e-226 787.3 554 72.2
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 9.8e-226 786.9 542 72.9
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 9.8e-226 786.9 552 72.6
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 9.8e-226 786.9 567 72.5
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 9.8e-226 786.9 521 75.8
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 4.9e-225 784.6 561 71.1
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 6.4e-225 784.3 559 71.2
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 1.9e-224 782.7 514 75.9
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 7.0e-224 780.8 514 74.9
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 9.2e-224 780.4 558 71.1
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 2.7e-223 778.9 554 70.6
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 3.5e-223 778.5 535 74.2
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 7.8e-223 777.3 507 75.0
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.7e-222 776.2 565 69.7
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 2.3e-222 775.8 549 70.3
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 5.1e-222 774.6 542 72.9
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 1.5e-221 773.1 556 71.4
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.5e-221 773.1 550 70.9
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 3.3e-221 771.9 555 70.1
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 4.3e-221 771.5 556 70.9
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 9.5e-221 770.4 556 70.9
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 8.1e-220 767.3 531 72.9
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 8.1e-220 767.3 559 69.1
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 8.1e-220 767.3 554 69.1
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 1.1e-219 766.9 533 72.0
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 1.8e-219 766.1 527 71.9
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.8e-219 766.1 559 69.2
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 5.2e-219 764.6 551 69.5
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 6.8e-219 764.2 544 71.3
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 1.5e-218 763.1 524 73.1
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 2.6e-218 762.3 523 72.7
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 5.8e-218 761.1 549 70.5
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 9.9e-218 760.4 535 70.8
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 9.9e-218 760.4 530 71.7
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 2.9e-217 758.8 539 70.7
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 2.9e-217 758.8 528 72.0
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 8.3e-217 757.3 564 69.7
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 2.4e-216 755.7 529 71.3
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 4.1e-216 755.0 539 69.6
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 4.1e-216 755.0 565 68.7
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 7.1e-216 754.2 454 80.0
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 2.1e-215 752.7 546 69.2
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 2.7e-215 752.3 547 70.6
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 3.5e-215 751.9 552 69.2
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 7.8e-215 750.7 542 71.4
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 7.8e-215 750.7 512 73.2
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.0e-214 750.4 512 72.7
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 2.3e-214 749.2 508 73.4
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 8.6e-214 747.3 510 72.7
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 8.6e-214 747.3 548 70.3
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 1.5e-213 746.5 540 70.0
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 1.9e-213 746.1 519 72.8
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 2.5e-213 745.7 530 70.2
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 3.3e-213 745.3 544 68.6
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 4.3e-213 745.0 510 72.5
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 4.3e-213 745.0 553 68.9
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 5.6e-213 744.6 564 69.9
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 5.6e-213 744.6 513 72.5
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 7.3e-213 744.2 510 72.5
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 7.3e-213 744.2 543 68.7
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 1.6e-212 743.0 570 67.7
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 2.1e-212 742.7 507 72.6
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 6.2e-212 741.1 536 70.1
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 1.4e-211 740.0 546 68.3
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 1.2e-210 736.9 553 68.5
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 1.1e-208 730.3 516 72.7
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 1.1e-208 730.3 484 75.0
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 5.4e-208 728.0 510 71.8
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 6.0e-207 724.5 560 66.4
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 1.7e-206 723.0 445 78.2
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 1.1e-205 720.3 480 73.8
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.9e-205 719.5 507 71.8
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 1.3e-204 716.8 525 70.1
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 4.8e-204 714.9 546 67.0
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 6.2e-204 714.5 424 79.7
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 4.4e-202 708.4 613 61.8
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 5.8e-202 708.0 517 69.8
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 1.3e-201 706.8 443 77.0
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 1.3e-201 706.8 424 80.2
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 2.2e-201 706.1 555 64.3
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 8.4e-201 704.1 560 65.0
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 2.4e-200 702.6 462 73.8
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 6.6e-198 694.5 475 72.0
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 4.3e-197 691.8 515 69.1
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 1.8e-182 643.3 575 61.9
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.4e-179 633.6 375 81.6
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 5.3e-179 631.7 513 62.2
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 1.0e-177 627.5 419 73.5
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 4.5e-162 575.5 386 76.4
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 5.9e-154 548.5 451 59.6
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 5.0e-153 545.4 508 54.9
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 3.9e-150 535.8 419 65.9
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 1.8e-147 526.9 438 59.6
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 7.7e-146 521.5 388 68.8
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 2.7e-135 486.5 440 55.2
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 1.2e-133 481.1 539 53.8
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 2.4e-131 473.4 560 53.0
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.8e-126 457.2 560 50.9
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.2e-123 446.4 571 50.8
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 9.2e-123 444.9 540 51.5
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 9.8e-117 424.9 537 50.8
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 2.2e-116 423.7 452 54.4
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 6.4e-116 422.2 476 48.5
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 1.4e-110 404.4 480 47.3
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 2.5e-104 383.6 483 44.1
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 2.1e-103 380.6 255 74.5
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 1.5e-80 304.7 177 82.5
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.9e-80 304.3 481 39.3
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 3.7e-71 273.5 169 77.5
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 5.7e-56 223.0 128 88.3
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.3e-52 211.8 128 83.6
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 1.4e-46 191.8 206 54.4
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 6.9e-46 189.5 162 61.7
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 1.4e-38 165.2 139 61.9
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.0e-33 149.1 131 58.0
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 7.5e-32 142.9 85 81.2
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 1.3e-28 132.1 105 61.0
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.5e-24 118.6 125 45.6
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 3.2e-19 100.9 104 53.8
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.5e-16 92.0 58 74.1
Sopen04g004520 Solanum pennellii HOM05D001773 ORTHO05D001710 1.4e-14 85.5 70 65.7
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 1.1e-11 75.9 133 36.8
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 4.0e-09 67.4 102 47.1
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 2.9e-07 61.2 38 73.7
Sopen01g006830 Solanum pennellii HOM05D001773 ORTHO05D001710 1.4e-06 58.9 38 73.7


User provided reference genes

Program Settings