Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 0.0e+00 1233.4 640 100.0
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 0.0e+00 1198.0 640 97.0
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 0.0e+00 1194.1 640 97.0
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 0.0e+00 1076.2 653 85.6
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 4.0e-308 1060.8 666 84.1
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.4e-307 1057.7 665 83.9
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 4.5e-275 951.0 670 76.6
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 2.9e-221 772.3 608 66.4
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 6.2e-216 754.6 676 61.1
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 1.2e-214 750.4 657 59.8
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 8.4e-213 744.2 641 62.7
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 5.1e-210 734.9 660 59.4
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 4.8e-208 728.4 661 58.4
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 6.2e-208 728.0 589 64.2
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 3.1e-207 725.7 587 64.1
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 5.3e-207 724.9 601 61.7
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 9.0e-207 724.2 651 59.8
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 2.6e-206 722.6 597 63.0
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 4.5e-206 721.8 648 59.4
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 4.5e-206 721.8 650 59.8
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 1.3e-205 720.3 587 63.5
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 1.3e-205 720.3 587 63.5
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 1.9e-204 716.5 678 59.1
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 7.1e-204 714.5 671 57.8
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 3.0e-202 709.1 660 58.8
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 8.7e-202 707.6 595 62.5
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 2.5e-201 706.1 655 59.4
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 5.6e-201 704.9 713 55.4
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 1.6e-200 703.4 660 57.6
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 3.7e-200 702.2 655 59.2
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 4.8e-200 701.8 656 58.4
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 6.2e-200 701.4 713 55.1
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 6.2e-200 701.4 654 58.3
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 1.1e-199 700.7 660 57.6
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 3.1e-199 699.1 663 56.4
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 3.1e-199 699.1 656 57.6
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 4.0e-199 698.7 655 57.9
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 5.3e-199 698.4 652 58.9
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 5.3e-199 698.4 653 59.1
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 1.5e-198 696.8 599 61.8
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.6e-198 696.0 665 56.8
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 5.8e-198 694.9 658 57.1
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 7.6e-198 694.5 651 57.8
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.3e-197 693.7 657 58.1
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.7e-197 693.3 643 58.5
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.9e-197 692.6 642 58.4
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 6.5e-197 691.4 660 58.2
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 6.5e-197 691.4 643 58.3
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 8.4e-197 691.0 658 57.3
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 1.1e-196 690.6 659 57.2
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 1.9e-196 689.9 604 60.8
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 3.2e-196 689.1 680 57.5
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 4.2e-196 688.7 652 57.1
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.7e-195 686.0 661 57.9
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 4.6e-195 685.3 648 57.6
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.0e-194 684.1 662 57.7
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.0e-194 684.1 662 57.7
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 1.8e-194 683.3 663 56.1
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 8.7e-194 681.0 678 55.5
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 1.5e-193 680.2 668 57.6
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 2.5e-193 679.5 521 65.1
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 5.7e-193 678.3 654 58.1
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 2.1e-192 676.4 649 56.7
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.8e-192 676.0 594 60.3
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 9.0e-191 671.0 579 61.3
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 1.5e-190 670.2 608 60.5
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 2.6e-190 669.5 656 55.6
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 1.3e-189 667.2 595 58.0
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 1.3e-189 667.2 616 58.3
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 2.9e-189 666.0 603 59.7
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 1.4e-188 663.7 655 56.6
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 3.0e-186 656.0 644 56.8
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 3.9e-186 655.6 665 54.4
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 2.2e-184 649.8 675 53.3
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 9.0e-183 644.4 629 57.6
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 1.9e-180 636.7 611 54.7
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 3.7e-176 622.5 609 56.0
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 1.1e-175 620.9 505 63.4
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.4e-175 620.5 607 57.2
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 1.6e-171 607.1 732 49.0
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 2.7e-171 606.3 648 53.9
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 8.8e-170 601.3 732 48.9
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.1e-169 600.9 589 57.4
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.3e-168 597.4 650 53.7
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 1.3e-168 597.4 595 56.1
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 5.3e-167 592.0 444 68.5
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 7.0e-167 591.7 650 53.1
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.7e-165 587.0 648 52.8
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 1.7e-165 587.0 670 50.3
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.1e-164 584.3 652 52.9
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 1.9e-164 583.6 558 57.3
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 2.7e-163 579.7 542 56.6
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.0e-162 577.8 586 55.5
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 4.4e-161 572.4 604 53.3
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 1.3e-160 570.9 644 50.9
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 5.3e-159 565.5 636 50.5
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 7.0e-159 565.1 648 49.8
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 2.0e-158 563.5 643 51.2
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 2.6e-158 563.1 645 50.9
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 3.5e-158 562.8 573 53.8
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 1.0e-157 561.2 631 50.2
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 1.7e-157 560.5 643 50.9
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 2.2e-157 560.1 651 49.2
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 2.9e-157 559.7 645 50.4
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 6.5e-157 558.5 643 50.7
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 1.1e-156 557.8 651 48.8
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.1e-156 557.8 532 56.6
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 7.2e-156 555.1 523 56.2
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 5.7e-153 545.4 622 49.2
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 2.2e-152 543.5 669 48.4
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 2.0e-150 537.0 634 49.2
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 4.5e-150 535.8 649 49.3
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 5.9e-150 535.4 650 50.0
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.5e-148 530.8 625 49.8
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 5.5e-148 528.9 633 49.6
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 1.3e-144 517.7 614 47.2
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 5.6e-140 502.3 627 46.9
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 1.8e-135 487.3 478 55.4
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.6e-134 484.2 663 45.7
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 1.3e-125 454.5 633 43.0
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 8.1e-123 445.3 635 42.0
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 2.1e-118 430.6 627 45.0
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.6e-91 341.3 538 38.8
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 1.2e-89 335.1 253 66.0
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 3.4e-89 333.6 565 36.8
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 5.8e-89 332.8 581 36.5
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 2.7e-86 323.9 466 40.1
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 7.9e-86 322.4 412 43.2
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 1.3e-83 315.1 228 67.1
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 6.2e-83 312.8 321 53.0
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 9.6e-76 288.9 348 48.0
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 2.6e-73 280.8 216 67.1
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.6e-49 201.8 249 48.6
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 5.9e-49 199.9 122 79.5
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 1.6e-17 95.5 541 23.1
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 7.3e-07 60.1 75 45.3
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 4.7e-06 57.4 175 25.7


User provided reference genes

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